SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3182

Length: 2695 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3182
CGTCGTGACCTTGGCTGTCACTCAGGTTTATCGTCGTGACCTTGGCTGTCACTCAATTTTGGAGAACCGTTTTCTTGACGAGGTCTGATGTTATTTTAAAATCGGAGCCCTGAAGTCTTCTTTTTGATATTGATATTGTGCAGTGCTCTGCATGTTCCTTCACGGACACGGAAAAGGCCGCGAAAGATTGCTTCGCGGACGCTGATAGCTTGCGTGTGGTAGGCCGTCGGAATAAGTCCGAAGGTTCATTTCTTTGCTTTGAATTTTTTTTGACTCGGATCAAAACCTCGCATGCTGGGATTTTGAGGGATAGAATACGCGGCGTGCTCTAATGCTTTAGATTTTGTTTCTTATGTGTGTAAATGGCGTCTGTAGAGCTCTGTTACTGAGATAAAATTTTGACTCTCTTAAGAACTGCGAGGTTTTTGTCAGATTATTGGGTATACGACGTACAGATATTATCTTTCCCATTTCGGCAAACTTTGAGCTGCTTTTACCGAATACTTCGGTTAAATTTCAGCGTTTTGTGACCTGTCAACATTATGTTGTTTTGAAGAATTTGCCGAAAAAATCTTTTGGCCAAGCGTCCTTTTGAATGCATCTCGTAGCGTTTTAAGCTCTTCCTCGGTTTTATCATCTTTCATAGCCGGAAATTGAGGTTTGAGGTCCAAATCTCATCATGCCACTTTTCCAGATGGCTTTAATGCATTGAGAAAATAAACTGCAAATTTCCTTCATAAAACTGGAAACGCATTCCGGAGCTACTTTGCCGTTTTTAATTTCGTCAGGTTTGGGCCTTTTTATCTTTAAAGTTTGTATAGTAGCCACCTGCAATCTTTTGTAGTGAACGGAGGCAGAAACGTAGACACAGTTCAAGCAGTCGATGGCATTCTGAATCTCTTTACTAGTTCGGAGCATAAGTAGCAGAAGGATCCCTGGTTCAGATAGGCAGATATACTGAATGGACCGAGAATCCCTTCCTACTGCATGGCTTTTCTTGTTCCTCTTTTTTTTGCTATTAATTTGTCCGTCAGATGTGCATGGAGCGTTGGCACCTACGAAGCGGAGCTCAAAAAATGCATATGCTACAATGATGTACATGGGGACACCGAGAGACTATGAATTCTATGTTGCTATCAGGGTTATGCTTCGATCGCTCATTCGGCTTAGAGTGAATGCAGACCTTGTTGTTATTGCTTCCAAGGATGTTCCTCAGCAATGGATAAGGACTCTACAGTCAGATGGGGTTATAGTTAAACCTGTGGACAATATAGAGAATCCTTACAGAAACCAGCCTGGATTCAACAAACGGTTTACTCTAACGCTGAATAAGCTGTATGCGTGGACCCTAGTAGAGTATGATCGCATTGTCATGCTTGATGCGGACAATCTTTTCCTGCAGAATGTGGATGAACTCTTTCAGTGTGGGCAGTTCTGTGCCGCTTTCATTAATCCCTGTATTTTCCATACGGGGCTTTTTGTGTTACAGCCCTCAGTGGCTGTGTTCCATGATATGATGCATGAACTGAAAACATTAAGAAAAAACAGAGATGGTGCAGACCAAGGATTTCTGGTTTCGTATTTTAATGACTTGCTAGATAGTCCGATGTTTTATCCTCCTGCCAATGGGTCTAAACTGAATGGAATCTATCGACTTCCTTTAGGATATCAGATGGACGCTTCTTATTTCTACTTGAAGCTGAAATGGCATGTGCCATGTGGACCAAATAGTGTCATCACTTTTCCTAGTGTTCCATGGATGAAGCCATGGTACTGGTGGTCATGGCCGGTTCTCCCCTTGGGGCTTTCTTGGCACGAGCAGAGGCGTCAGACAATAGGGTATGGTGCGGAGATTCCTCTGGTTATAGCCGAGTCACTGTTTTACTTGGTCACTCTGGCTCTATCGATGATTGCTTGCAGAGGCTCCCAAACAGCTTCATCTAAGTTCTGCCTCTTGAAATCAGAACAGGGTTTGTCATTCTATTCTATTGTTCCCAAGCTGTTGGTTCTATTTAGTATGGTGGGAAGTTACTTGCTTCCATTTTTGCTTGTTCCAAGAACAATTAATCCTCTGATTGGTTGGGGACTTTATTTACTGGGTTCCATGTCAATTGGGGTTCTTGTTATAAATGCCTTTCAGCTCCCAGTTTTGCCCGTGTTCACCCCCTGGTTGGGTATATTCGGTGTACTTCTTGTCATGGCCTTTCCTCTTTATTCCAATGGCATAGTAAGAGCAATATCGGTAGCAGTATATGCTGCTCTGGCTGCTCCGTTTGCATGGTGGGCTCTTGGAAGAGCAATGTCAACATTATCAAAATCTGATCAGCCACAGTTTCAGATCACCAAAATTTGTTGATGGAAATCATTCTAAACATTGCCATGAAATATACTCTTATCTCAGAAAACACTTTGCAGTCCCTGCAGTTCTTTTTATACAACCTACTGAGCTTCTTTTGAGTTTTCTGGACTCCTCGCAAGAGGTGAGCGGGCTGAATCAGAAGGCTTCAAATTCTGATGGATTTCTAATTCCGTTAAAGATATGCAGTGGCAATGTTTGAGTGAACTCTGTAATAGAAAGAGTTTAGTGGTATATCTCAAAATTGTGACATTCTCAATGGGATATATATATATATATATACAGATCCTGTTATCTTCTAGATGGTTACCTCATTATTAATTCATTTATTCTTGTGCT

Ace file of the UniGene sp_v1.1_unigene3182

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glucosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SSF3_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	transferring glycosyl groups	-	-	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 8	IPR002495	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLU5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 100 aas, putative chimeric sequence, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 465 - 567

Fln protein: MDRESLPTAWLFLFLFFLLLICPSDVHGALAPTKRSSKNAYATMMYMGTPRDYEFYVAIRVMLRSLIRLRVNADLVVIASKDVPQQWIRTLQSDGVIVKPVDNIENPYRNQPGFNKRFTLTLNKLYAWTLVEYDRIVMLDADNLFLQNVDELFQCGQFCAAFINPCIFHTGLFVLQPSVAVFHDMMHELKTLRKNRDGADQGFLVSYFNDLLDSPMFYPPANGSKLNGIYRLPLGYQMDASYFYLKLKWHVPCGPNSVITFPSVPWMKPWYWWSWPVLPLGLSWHEQRRQTIGYGAEIPLVIAESLFYLVTLALSMIACRGSQTASSKFCLLKSEQGLSFYSIVPKLLVLFSMVGSYLLPFLLVPRTINPLIGWGLYLLGSMSIGVLVINAFQLPVLPVFTPWLGIFGVLLVMAFPLYSNGIVRAISVAVYAALAAPFAWWALGRAMSTLSKSDQPQFQITKIC*

Protein Length: 466

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTATCGTCGTGACCTTGGCTGTCACTCAATTTTGGAGAACCGTTTTCTTGACGAGGTCTGATGTTATTTTAAAATCGGAGCCCTGAAGTCTTCTTTTTGATATTGATATTGTGCAGTGCTCTGCATGTTCCTTCACGGACACGGAAAAGGCCGCGAAAGATTGCTTCGCGGACGCTGATAGCTTGCGTGTGGTAGGCCGTCGGAATAAGTCCGAAGGTTCATTTCTTTGCTTTGAATTTTTTTTGACTCGGATCAAAACCTCGCATGCTGGGATTTTGAGGGATAGAATACGCGGCGTGCTCTAATGCTTTAGATTTTGTTTCTTATGTGTGTAAATGGCGTCTGTAGAGCTCTGTTACTGAGATAAAATTTTGACTCTCTTAAGAACTGCGAGGTTTTTGTCAGATTATTGGGTATACGACGTACAGATATTATCTTTCCCATTTCGGCAAACTTTGAGCTGCTTTTACCGAATACTTCGGTTAAATTTCAGCGTTTTGTGACCTGTCAACATTATGTTGTTTTGAAGAATTTGCCGAAAAAATCTTTTGGCCAAGCGTCCTTTTGAATGCATCTCGTAGCGTTTTAAGCTCTTCCTCGGTTTTATCATCTTTCATAGCCGGAAATTGAGGTTTGAGGTCCAAATCTCATCATGCCACTTTTCCAGATGGCTTTAATGCATTGAGAAAATAAACTGCAAATTTCCTTCATAAAACTGGAAACGCATTCCGGAGCTACTTTGCCGTTTTTAATTTCGTCAGGTTTGGGCCTTTTTATCTTTAAAGTTTGTATAGTAGCCACCTGCAATCTTTTGTAGTGAACGGAGGCAGAAACGTAGACACAGTTCAAGCAGTCGATGGCATTCTGAATCTCTTTACTAGTTCGGAGCATAAGTAGCAGAAGGATCCCTGGTTCAGATAGGCAGATATACTGA_-_ATGGACCGAGAATCCCTTCCTACTGCATGGCTTTTCTTGTTCCTCTTTTTTTTGCTATTAATTTGTCCGTCAGATGTGCATGGAGCGTTGGCACCTACGAAGCGGAGCTCAAAAAATGCATATGCTACAATGATGTACATGGGGACACCGAGAGACTATGAATTCTATGTTGCTATCAGGGTTATGCTTCGATCGCTCATTCGGCTTAGAGTGAATGCAGACCTTGTTGTTATTGCTTCCAAGGATGTTCCTCAGCAATGGATAAGGACTCTACAGTCAGATGGGGTTATAGTTAAACCTGTGGACAATATAGAGAATCCTTACAGAAACCAGCCTGGATTCAACAAACGGTTTACTCTAACGCTGAATAAGCTGTATGCGTGGACCCTAGTAGAGTATGATCGCATTGTCATGCTTGATGCGGACAATCTTTTCCTGCAGAATGTGGATGAACTCTTTCAGTGTGGGCAGTTCTGTGCCGCTTTCATTAATCCCTGTATTTTCCATACGGGGCTTTTTGTGTTACAGCCCTCAGTGGCTGTGTTCCATGATATGATGCATGAACTGAAAACATTAAGAAAAAACAGAGATGGTGCAGACCAAGGATTTCTGGTTTCGTATTTTAATGACTTGCTAGATAGTCCGATGTTTTATCCTCCTGCCAATGGGTCTAAACTGAATGGAATCTATCGACTTCCTTTAGGATATCAGATGGACGCTTCTTATTTCTACTTGAAGCTGAAATGGCATGTGCCATGTGGACCAAATAGTGTCATCACTTTTCCTAGTGTTCCATGGATGAAGCCATGGTACTGGTGGTCATGGCCGGTTCTCCCCTTGGGGCTTTCTTGGCACGAGCAGAGGCGTCAGACAATAGGGTATGGTGCGGAGATTCCTCTGGTTATAGCCGAGTCACTGTTTTACTTGGTCACTCTGGCTCTATCGATGATTGCTTGCAGAGGCTCCCAAACAGCTTCATCTAAGTTCTGCCTCTTGAAATCAGAACAGGGTTTGTCATTCTATTCTATTGTTCCCAAGCTGTTGGTTCTATTTAGTATGGTGGGAAGTTACTTGCTTCCATTTTTGCTTGTTCCAAGAACAATTAATCCTCTGATTGGTTGGGGACTTTATTTACTGGGTTCCATGTCAATTGGGGTTCTTGTTATAAATGCCTTTCAGCTCCCAGTTTTGCCCGTGTTCACCCCCTGGTTGGGTATATTCGGTGTACTTCTTGTCATGGCCTTTCCTCTTTATTCCAATGGCATAGTAAGAGCAATATCGGTAGCAGTATATGCTGCTCTGGCTGCTCCGTTTGCATGGTGGGCTCTTGGAAGAGCAATGTCAACATTATCAAAATCTGATCAGCCACAGTTTCAGATCACCAAAATTTGTTGATGGAAATCATTCTAAACATTGCCATGAAATATACTCTTATCTCAGAAAACACTTTGCAGTCCCTGCAGTTCTTTTTATACAACCTACTGAGCTTCTTTTGAGTTTTCTGGACTCCTCGCAAGAGGTGAGCGGGCTGAATCAGAAGGCTTCAAATTCTGATGGATTTCTAATTCCGTTAAAGATATGCAGTGGCAATGTTTGAGTGAACTCTGTAATAGAAAGAGTTTAGTGGTATATCTCAAAATTGTGACATTCTCAATGGGATATATATATATATATATACAGATCCTGTTATCTTCTAGATGGTTACCTCATTATTAATTCATTTATTCTTGTGCT

Fln Alignment:

sp_v1.1_unigene3182___PTKRSSKNAYATMMYMGTPRDYEFYVAIRVMLRSLIRLRVNADLVVIASKDVPQQWIRTLQSDGVIVKPVDNIENPYRNQPGFNKRFTLTLNKLYAWTLVEYDRIVMLDADNLFLQNVDELFQCGQFCAAFINPCIFHTGLFVLQPSVAVFHDMMHELKTLRKNRDGADQGFLVSYFNDLLDSPMFYPPANGSKLN-----GIYRLPLGYQMDASYFYLKLKWHVPCGPNSVITFPSVPWMKPWYWW-SWPVLPLGL
B8LLU5______________PRSRKTLEAYATLLYGD-----EFLLGVRVLGKSIRDTGTTRDMVALVSDGVSPYAVQLLQADGWIVEHIGLLANPNQKRP---KRFWGVYTKLKIFNMTNYKKVVYLDADTVVLRSIDDLFQCRKFCANLKHSERLNSGVMVVEPSESVFKDMMAKVTTL-PSYTGGDQGFLNSYYGDFPNARLFEPNLSADELKSRPEPSMERLSTLYNADVGLYMLANKWMVDGSELRVVHYTLGP-LKPWDWWTAWLLKPVDL

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
419	10		90		0.90298
427			11	88	0.923564
469		88		11	0.923564
506		11		88	0.923564
645	75			25	1.0
1016			20	80	0.995493
1019		80		20	0.995493
1486			66	22	0.999999
1627		80		20	0.995493
1631		20	80		0.995493
1633		20	80		0.995493
1634	20			80	0.995493
1635		80	20		0.995493
1637	80		20		0.995493
1639	80		20		0.995493
1644	80	20			0.995493
1645	20			80	0.995493
1648	80	20			0.995493
1649	80	20			0.995493
1696		20		80	0.995493
1834			88	11	0.923564
1962	86			13	0.999973
1963	86		13		0.999973
2416		85	14		0.999981
2616		50	50		1.0
2641	66	33			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2620	2638	AT AT AT AT AT AT AT AT AT A	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain