SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3156

Length: 1397 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3156

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	exonuclease family protein	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	71%
Blast2go	exonuclease family protein	-	-	80%

Source	InterPros	Term	Type	Identity
Blast2go	Exonuclease	IPR006055	-	80%
Blast2go	Ribonuclease H-like domain	IPR012337	-	80%
Blast2go	Exonuclease, RNase T/DNA polymerase III	IPR013520	-	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6GT62

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 99 aas, your sequence is shorter than subject: 369 - 497

Fln protein: MAADRPEIVFFDLETTIPLRVGQKFKVLEFGAILVCPQKLVELKELCTFIRPDDLSLISEPSIKCNGITREEVATAPKFEDVADEIYDFMNGRVWAGHNIVRFDCVRIREAFAEIGRPAPEAKGLIDSLHLLQQKFGRRAGDMKMASLAKYFGLGTQKHRSLDDVRLNLEILKYCATVLFLESNFPDVLSVAVSSTPVKSALLDASTSKSSSTSKSRRKGKTSIEIVSEEKGQKPLQRKSKMSPLNNVVGRLSNNSAKSVNSGADKSPFDLTELREVLEDENHDILSASAQYFKVKQSECTESGDNFELHEESTFAPKVSGDRSLGILPDGSNVMSVSVQCCKAKHQNVPNLKFSGYPSDIYIFHRNF*

Protein Length: 370

Fln nts: CGTCGTGACCTTGGGTGTCAGTCTTTTTTGGGTTGTTGGAGCGATTCTTCTGTTTCGTCAGATTTCATTTCAAGGTCTGTAGCCACTGTAGCTAGCATCAAGTATTGTTCGCGCCATTCATATATTTTTGTTAAATTTCAAGGTATCCTGGCTGAAATTTAAGGCACCAAAGAGTTTTGATTTAAGGGTCTGAAATTTGAAGTATTCCTA_-_ATGGCTGCGGATCGGCCTGAGATAGTCTTCTTTGATTTGGAGACGACAATACCTCTTCGAGTGGGACAAAAATTTAAGGTACTAGAATTTGGTGCTATTCTGGTTTGTCCCCAAAAGCTCGTAGAGCTCAAAGAGCTCTGCACTTTTATCAGACCAGATGATCTCTCTCTGATTTCCGAACCAAGCATCAAATGTAACGGCATTACTCGCGAAGAAGTGGCCACTGCACCAAAATTTGAAGATGTTGCGGATGAAATTTACGATTTTATGAACGGCAGAGTATGGGCTGGGCACAATATTGTGAGGTTTGATTGCGTGCGTATTCGTGAGGCATTTGCTGAGATTGGACGGCCCGCCCCAGAGGCAAAGGGATTGATTGATTCCTTGCATTTGTTGCAGCAGAAGTTTGGGCGGCGAGCTGGTGATATGAAGATGGCTAGCTTGGCAAAATATTTTGGACTTGGAACTCAGAAGCACAGAAGCTTAGATGATGTCCGGCTGAATCTGGAAATCTTGAAATATTGTGCAACTGTATTGTTCTTAGAGTCAAATTTTCCCGATGTTTTATCAGTTGCCGTTTCATCTACGCCTGTTAAATCAGCGTTGTTGGATGCTTCCACAAGCAAAAGTTCTTCCACAAGCAAAAGTCGCAGGAAAGGAAAAACATCCATAGAAATTGTTTCTGAAGAGAAAGGTCAAAAGCCTCTTCAAAGAAAATCTAAAATGTCGCCTCTAAATAATGTAGTTGGAAGACTTTCAAATAATTCTGCCAAATCTGTAAATTCAGGGGCAGATAAAAGTCCTTTTGACCTCACTGAACTACGTGAAGTTTTGGAAGATGAAAACCATGATATCTTATCAGCTTCAGCTCAGTATTTTAAGGTAAAACAATCAGAATGCACTGAATCTGGAGATAACTTCGAACTTCATGAGGAATCCACTTTTGCCCCAAAGGTCTCAGGGGATAGAAGTCTTGGTATCTTACCAGATGGTTCTAATGTTATGTCAGTTTCAGTTCAGTGTTGTAAAGCAAAACATCAGAATGTGCCAAATCTGAAATTTTCTGGATACCCATCAGACATTTACATTTTCCACAGAAATTTCTGAAGATGAAGATCTTACTATCTTAACAGATCCTGCCTGTGTTGTCTCAGTTTCAGCTCAACGTTGTAAGGTAGAACAATCAG

Fln Alignment:

sp_v1.1_unigene3156___DRPEIVFFDLETTIPLRVGQKFKVLEFGAILVCPQKLVELKELCTFIRPDDLSLISEPSIKCNGITREEVATAPKFEDVADEIYDFMNGRVWAGHNIVRFDCVRIREAFAEIGRPAPEAKGLIDSLHLLQQKFGRRAGDMKMASLAKYFGLGTQKHRSLDDVRLNLEILKYCATVLFLESNFPDVLS
F6GT62______________ERSEIAFFDVETTVPTRVGQGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLSVRCNGITRDAVVSAPNFRDIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGSIDSLALLTQRFGRRAGDMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFT

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
60	66		33		0.997452
112		66		33	0.997452
194	75			25	0.996473
206			20	80	0.995493
207		80	20		0.995493
208		80	20		0.995493
209			20	80	0.995493
342	60			40	1.0
390	80		20		0.995493
393	80		20		0.995493
422	83			16	0.994512
451	20		80		0.995493
459			80	20	0.995493
485			80	20	0.995493
487	80			20	0.995493
491		20		80	0.995493
492	80	20			0.995493
494			80	20	0.995493
500		20	80		0.995493
501	20		80		0.995493
503	80			20	0.995493
591		50		50	1.0
756	33		66		0.997452
768		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain