SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3153

Length: 2287 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene3153
ATGGGGAAATTATAACCTGTCGTCATTTCCTCCCATGGGGGGAGACGAGTAGGCGAGTATCATGGATACAGTTGCTGCCACTACTGTCACTGCATGCATTTATAGAAACTCCTTTCCCAGAGCCCGTGGTGCATATGATATTAATTCCCAAGTAAAAATCGGCAAAATTGGCTTCGGATTGAACCAATGTGGCCAATCTTTTTACAAGATTAGACATAAGAGCAATAATAGAACGACAGGAACCAGGGGATTCCAGGTCTATGCAATGGCGGATTCAGCAGCAGCCGTGGACCAGAAAACTGAGAAATTCGTGGTGCCCTCTGTGCAGAAGGCATGGATTTATAAGGAATATGGGGCTGCCAAGGACGTTTTGCAGTTGGACGATGGGGTCCCGGTACCAGAGGTTAAAGAAGATCAAGTTTTAATTAAAGTCTGCGCTGCGGCACTCAATCCTGTCGATTTTAAGAGGCGGCAAGGGAAATTTAAAGCCACCGACTCTCCACTTCCCACAGTCCCGGGCTATGACGTTGCTGGCATAGTGATAAAAGTAGGTAGCAAAGTGGAAGGGTTCAAAGAAGGTGATGAAGTGTATGGAGACATACATGAAAAAGCTCTAGATAACCCCAAGCAATATGGTTCACTTGGTGAATACACAGCTGTAGAAGAGAAGTTGATAGCTTTAAAGCCAAAAAACCTAGATTTCGCTCAGGCAGCAAGTCTTCCTCTTGCAATTGAAACTGCATATGAAGGCCTTGAAAGAACAGGTTTTGGTCCTGGAAAATCCATTCTTGTGTTAGGAGGTGCAGGTGGAGTAGGCAGTCTTGTCATACAGTTAGCAAGAAAAGTCTTTGGTGCATCAACCATAGCTGCAACTTCAAGCACTGGGAAACTGGAATTCTTGAAGAGCTTGGGAACTGATATTGCCATTGATTACACTAAGCAAAATTTTGAAGAACTGCCTGAGAAGTATGATGTCATTTATGATACCGTTGGGCAATGTGACAAGGCAGTGAAGGCAGTAAAAGGAGGAGGAAGCGTTGTGGCTTTGACTGGAGCTGTGACACCCCCAGGTTTCAGATTTGTGGTCACCTCAAATGGCTCAGTTCTTTCCAAACTGAATCCATATTTAGAAAGTGGAGAAATAAAACCTATTATTGATCCAAAAGGCCCCTTTTCCTTCTCCCAATTGGTTGAAGCCTTTTCCTACCTTGAAACATGCAGAGCTACTGGTAAAGTGGTCATTTCTCCCATTCCTTGAAATACGAACATCAAGTTTGATCCTTGTCATATTGGCATGGTATCTTACAGAGCTGATAGGGTAGAATATCATTTTAACTGGAACTATTCAGATTCTTCTATATTATTGGTTCAGCATAATATAGAAGTTTTATGTGACTTGGTTTCTCTTCTAAACCCTAAGCCCATGCTCAATATGTCTTCCATGATGGATGCAATGGAACCACATTACGCAGAGACGCTGGGATCATCAGCAGAGTTGTATGTAGATAGAGAACTTTACGGTATTGTTAAGAATAACTTCAAGGTCCATGCAATACTTTCATGCGTTTCCACTCGTTCCATGAGGTTTGTTCCGAATGGCCCTAACAGTTGCTTAGATTCGGTATTAACATCAAAGCACCTTCAAAATAAAGGCATGCAAATTTCTCAGACAGGATGCACCAAGATGTCACATTAATTTTCAGAGCCACGGCATTCTGAATGGGCGTGGGAGATGTATAACCATATTCCTATAATTTCTCTTGGTTAATGTTTAATGTTAATTTCGAAGGCTTTTTCTGGGTCTTGCACATTAAATTCAAGATTATTTAGCCTCTGTCTGTATAGACAGAGTCTTTGCATTCAGTGCGCCTTTTTCGGATTCCATTTTATAACGAATTTAATATTTCAGTTGGTAGATTTATTAGATTTATTGTTTTACAATTGTGGTTTTTATTTTCTATAAACATGATGAACATATTACAAAGATGGTTTATTATAAGTCATTCCAACTCTATCTTTCCAGCATGATTTACAGATCTATATGTTCTATGCGTTGCAGTTGAGACTATCTGCTCATGTGCATACTTCATTATTATAAATCTTAGAAAAGGGAGGTGAACCAGTATAGCCTCTGCGATTTTTGTGTCGAACATGATCTAGTCCAAAAGGAGAAAGTGTTGACCCAAATTGTAATCCATCTAATAATTTAGTAGACCTCTCTGGCAATCTTTGTAAGCAGTCCATCAGGCAAAAGTATTAGTTGCATGTGATTGCATGTCCATCAGGC

Ace file of the UniGene sp_v1.1_unigene3153 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9SHB0_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	quinone oxidoreductase-like protein at1g23740	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	85%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	85%
Blast2go	stromule	GO:0010319	Cellular Component	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%
Blast2go	thylakoid	GO:0009579	Cellular Component	85%
Blast2go	apoplast	GO:0048046	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Blast2go	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	85%
Blast2go	Quinone oxidoreductase/zeta-crystallin, conserved site	IPR002364	-	85%
Blast2go	GroES-like	IPR011032	-	85%
Blast2go	Alcohol dehydrogenase, C-terminal	IPR013149	-	85%
Blast2go	Alcohol dehydrogenase GroES-like	IPR013154	-	85%
Blast2go	NAD(P)-binding domain	IPR016040	-	85%
Blast2go	Polyketide synthase, enoylreductase	IPR020843	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVP5

Fln msg:

Fln protein: MDTVAATTVTACIYRNSFPRARGAYDINSQVKIGKIGFGLNQCGQSFYKIRHKSNNRTTGTRGFQVYAMADSAAAVDQKTEKFVVPSVQKAWIYKEYGAAKDVLQLDDGVPVPEVKEDQVLIKVCAAALNPVDFKRRQGKFKATDSPLPTVPGYDVAGIVIKVGSKVEGFKEGDEVYGDIHEKALDNPKQYGSLGEYTAVEEKLIALKPKNLDFAQAASLPLAIETAYEGLERTGFGPGKSILVLGGAGGVGSLVIQLARKVFGASTIAATSSTGKLEFLKSLGTDIAIDYTKQNFEELPEKYDVIYDTVGQCDKAVKAVKGGGSVVALTGAVTPPGFRFVVTSNGSVLSKLNPYLESGEIKPIIDPKGPFSFSQLVEAFSYLETCRATGKVVISPIP*

Protein Length: 400

Fln nts: ATGGGGAAATTATAACCTGTCGTCATTTCCTCCCATGGGGGGAGACGAGTAGGCGAGTATC_-_ATGGATACAGTTGCTGCCACTACTGTCACTGCATGCATTTATAGAAACTCCTTTCCCAGAGCCCGTGGTGCATATGATATTAATTCCCAAGTAAAAATCGGCAAAATTGGCTTCGGATTGAACCAATGTGGCCAATCTTTTTACAAGATTAGACATAAGAGCAATAATAGAACGACAGGAACCAGGGGATTCCAGGTCTATGCAATGGCGGATTCAGCAGCAGCCGTGGACCAGAAAACTGAGAAATTCGTGGTGCCCTCTGTGCAGAAGGCATGGATTTATAAGGAATATGGGGCTGCCAAGGACGTTTTGCAGTTGGACGATGGGGTCCCGGTACCAGAGGTTAAAGAAGATCAAGTTTTAATTAAAGTCTGCGCTGCGGCACTCAATCCTGTCGATTTTAAGAGGCGGCAAGGGAAATTTAAAGCCACCGACTCTCCACTTCCCACAGTCCCGGGCTATGACGTTGCTGGCATAGTGATAAAAGTAGGTAGCAAAGTGGAAGGGTTCAAAGAAGGTGATGAAGTGTATGGAGACATACATGAAAAAGCTCTAGATAACCCCAAGCAATATGGTTCACTTGGTGAATACACAGCTGTAGAAGAGAAGTTGATAGCTTTAAAGCCAAAAAACCTAGATTTCGCTCAGGCAGCAAGTCTTCCTCTTGCAATTGAAACTGCATATGAAGGCCTTGAAAGAACAGGTTTTGGTCCTGGAAAATCCATTCTTGTGTTAGGAGGTGCAGGTGGAGTAGGCAGTCTTGTCATACAGTTAGCAAGAAAAGTCTTTGGTGCATCAACCATAGCTGCAACTTCAAGCACTGGGAAACTGGAATTCTTGAAGAGCTTGGGAACTGATATTGCCATTGATTACACTAAGCAAAATTTTGAAGAACTGCCTGAGAAGTATGATGTCATTTATGATACCGTTGGGCAATGTGACAAGGCAGTGAAGGCAGTAAAAGGAGGAGGAAGCGTTGTGGCTTTGACTGGAGCTGTGACACCCCCAGGTTTCAGATTTGTGGTCACCTCAAATGGCTCAGTTCTTTCCAAACTGAATCCATATTTAGAAAGTGGAGAAATAAAACCTATTATTGATCCAAAAGGCCCCTTTTCCTTCTCCCAATTGGTTGAAGCCTTTTCCTACCTTGAAACATGCAGAGCTACTGGTAAAGTGGTCATTTCTCCCATTCCTTGA___AATACGAACATCAAGTTTGATCCTTGTCATATTGGCATGGTATCTTACAGAGCTGATAGGGTAGAATATCATTTTAACTGGAACTATTCAGATTCTTCTATATTATTGGTTCAGCATAATATAGAAGTTTTATGTGACTTGGTTTCTCTTCTAAACCCTAAGCCCATGCTCAATATGTCTTCCATGATGGATGCAATGGAACCACATTACGCAGAGACGCTGGGATCATCAGCAGAGTTGTATGTAGATAGAGAACTTTACGGTATTGTTAAGAATAACTTCAAGGTCCATGCAATACTTTCATGCGTTTCCACTCGTTCCATGAGGTTTGTTCCGAATGGCCCTAACAGTTGCTTAGATTCGGTATTAACATCAAAGCACCTTCAAAATAAAGGCATGCAAATTTCTCAGACAGGATGCACCAAGATGTCACATTAATTTTCAGAGCCACGGCATTCTGAATGGGCGTGGGAGATGTATAACCATATTCCTATAATTTCTCTTGGTTAATGTTTAATGTTAATTTCGAAGGCTTTTTCTGGGTCTTGCACATTAAATTCAAGATTATTTAGCCTCTGTCTGTATAGACAGAGTCTTTGCATTCAGTGCGCCTTTTTCGGATTCCATTTTATAACGAATTTAATATTTCAGTTGGTAGATTTATTAGATTTATTGTTTTACAATTGTGGTTTTTATTTTCTATAAACATGATGAACATATTACAAAGATGGTTTATTATAAGTCATTCCAACTCTATCTTTCCAGCATGATTTACAGATCTATATGTTCTATGCGTTGCAGTTGAGACTATCTGCTCATGTGCATACTTCATTATTATAAATCTTAGAAAAGGGAGGTGAACCAGTATAGCCTCTGCGATTTTTGTGTCGAACATGATCTAGTCCAAAAGGAGAAAGTGTTGACCCAAATTGTAATCCATCTAATAATTTAGTAGACCTCTCTGGCAATCTTTGTAAGCAGTCCATCAGGCAAAAGTATTAGTTGCATGTGATTGCATGTCCATCAGGC

Fln Alignment:

sp_v1.1_unigene3153___MDTVAATTVTACIYRNSFPRARGAYDINSQVKIGKIGFGLNQCGQSFYKIRHKSNNRTTGTRGFQVYAMADSAAAVDQKTEKFVVPSVQKAWIYKEYGAAKDVLQLDDGVPVPEVKEDQVLIKVCAAALNPVDFKRRQGKFKATDSPLPTVPGYDVAGIVIKVGSKVEGFKEGDEVYGDIHEKALDNPKQYGSLGEYTAVEEKLIALKPKNLDFAQAASLPLAIETAYEGLERTGFGPGKSIXXXXXXXXXXXXVIQLARKVFGASTIAATSSTGKLEFLKSLGTDIAIDYTKQNFEELPEKYDVIYDTVGQCDXXXXXXXXXXXXXALTGAVTPPGFRFVVTSNGSVLSKLNPYLESGEIKPIIDPKGPFSFSQLVEAFSYLETCRATGKVVISPIP
A9NVP5______________MDTFAATTITARTCINSFPRAGGADDVQSHVKFGKIGFGWNQRGQSSYKLRHKSSNRTRGSRGVSVYAMADSAAAVDQKTEKFVVPSVQKAWIYKEYGAAKDVLQLDDGVPVPEVKEDQVLIKVCAAALNPVDFKRRQGKFKATDSPLPTVPGYDVAGIVIKVGSKVEGFKEGDEVYGDINEKALDNPKQYGSLGEYTAVEEKLVALKPKNLDFTQAASLPLAILTAYEGLERAGFGPGKSILVLGGAGGVGSLVIQLARKVFGASTIAATSSTGKLEFLKSLGTDISIDYTKQNFEELPEKYDVIYDAVGQCDKAVKAIKGGGSVVALTGAVTPPGFRFVVTSNGSVLSKLNPYLESGEIKPIIDPKGSFSFSQLVEAFSYLETCRATGKVVISPIP

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
1339	90	10			0.90298
1340	90	10			0.90298
1342	90			10	0.90298
1381	20		80		0.999996
1426	12		87		0.992554
1428		12		87	0.992554
1431	87	12			0.992554
1432	12			87	0.992554
1433	12		87		0.992554
1435	87			12	0.992554
1436		87		12	0.992554
1444	11			88	0.923564
1445	11			88	0.923564
1446		11		88	0.923564
1448		88	11		0.923564
1600		10		70	0.999998
1609	90		10		0.90298
2241	12	87			0.992554
2245		14		85	0.993533
2246		85		14	0.993533
2248		85	14		0.993533
2249	14	71	14		0.984337
2250		85		14	0.993533
2251	16	50	16		0.988986
2253	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain