SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3143

Length: 2230 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3143
GAGAAAGAAAGTTGGGAGGCTGCACTACAAACAGTGAGAGCTAAGCTTGAAGAGTCAGAAAAGGCCTGCTTGCAATATGAGATTGATGCAGCAAAGACAAGAAGTGAATTGGAGTCGGAGTTGGCAGGATTACAGCAGGTCCTTAAAGGAACTAAAGAGGAACTTTTATCTAGTAGAGCAGAGATTAGTCGATTAGAAGATGACTTTAAAGCTTACAAGAATCGTGCTCATGCTCTTCTTCAAAAAAAGGATGCTGAGCTGTCTGCTGTAAAGGATATGGATCTTGTAGCTGCTCAAGAGGCTGCTTTAAAGGATGCCCAAAGAGAGGCAGCTTTAGCCTTTGCTGAAAGAGATCGTGCTCTGAAAGCTCTTCAAGATTCTGTCAAAGATCATGAAACTGAGCTTGCAGCCAGGGCTGTGTCTCTCATAGATGCAGAACAGAGGATTAAAGACATGGCAATGAAACTTGAGTCCACAAAAGCTCATCTGCGATCAGAACAAGAAGCATGGCAGAGTACTCTCTCGAATGTTCAAGAAACATGGCGTTTAAAATATGAGGCTCTAGAGGCTCAAACAAGTAAAACGGCTATAACAAGTTCAGATGAAGACCTAAATTCATTCAGGATGAACTATGAGAAACTTAAGGAGGAGCATGATTCGTTTCGGGAAATGGCTAACAAAATCATTGAGGCAAAGGACAATGAAATATCTCGCCTTTTAGATGATAATAACAACCTACAAAGATCACTGCGTGCAACTCATCTGGTGCAGAAAGACCATAGTAACAATCAAGCTTCAGCACAACAAGATTCATCTGCATCTGTTGTTGCAGTGGCAGAGCAGCAAATTTTGGTCCTGGCTAGGCAACAAGCTCAAAGGGAGGAAGAGCTTGCACAGCGTCAGCGACATATTGAAGCCCTTCAAGAAGAGATTGCAGAGCTTGAGCGTGAGAATCGTCTCCACCATCAACAGGAAATGATGCTTAAGAGTGAGTTGCGGAACATGGATAGGGTTCAGAAGCGTGATGGTGTCGATATGACATATCTGAAGAATGTTATTTTGAAATTGCTTGAAACTGGAGAAGTTGAGGCTCTCCTCCCAGTCATTGGAACGTTATTGCAGTTCAGCCCCGAAGAGATCAGGAAATGTCAGGAAACCTATAATGCTCTACCAAATGTACCACTAAGTGGTGCTGCAGCTGTGGTTGATGCTGCAGCCTCTGCACCACGCTCCTTTTTTTCCAGATTTACACTTTGAGGTGGAGGATAAGTGGAGTATATTGAATTTTTGTGCATTGGATACTCTGATCCTTATTGCATTATGCATCACTTCTTTAGCAATGATCTGTTTTAAGATATAGTTTCTTCATGGGAAAATTAGTGAACATCTGCTCTTGCACACCATATTGACACCGTGGATCGTCTACAGATTATGTTAAGGAATGGCTGGCAGCAGCAGTGGTGTGCATGAAACGGAGGCTTATGAGGTTATCTAAGCGATCAGTTACTTGGCATACAGTTTCACACTCTAATTACAATAGCCTACCTTTTTCGGAAATGGATTTGGGGCAAGTTATGTCTGTCATCCATGTAATCCAGGCCTGTGAAAAGGATGAGTTCACTGTTTCAGATTTTCTGGAATATTGGACTGGATTCAGCTACTGGTCGGACACATCTTCAGTGCCCTTGTTGATAAAAATGAACCATTATTTGATCTTTGACACTTAGTGAAGAACTTGTTCCATTCTACCAATTAGGGATTTTCTGTTCCATTCTACCAAAGTAGGGATTTTCTGAAGTTTTCGAAAACATTTTTTTAATGATTATTATGCTATTTGCCATGTATGACTGGTTCATCTCTTGTATACTAAGATTATTTGGACAGCAATCTGTTCGTGAAGCAGTCCATCACTAGCATATAAAGCTTGTATCAGCTAGGCCCCAGGGGGTTCAAAACTGTGATGGTGGTATGTTGGATCAGCAGGCATACTTGAAAACATGATTATTCCTTCCAAACTTCTCAATTCCTAAGACATTCAATTATTTTAATCCATACCATTTTCTGCACCTCTTTAGCAACAACGCATTAAGAGGTCAGTAAATGTATGTATTTGAATTATTAACATAATGCATATTTATACTTGGAAGGATATGATCAAATATTTGATTCCAAGCGGACCTCAAATCTCTGTGTGTTCCCATTACAAATAAATAAGGTCGTGATTTGTTTT

Ace file of the UniGene sp_v1.1_unigene3143

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Golgi-localized protein GRIP [Arabidopsis thaliana]	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	atgrip protein binding	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	69%
Blast2go	trans-Golgi network	GO:0005802	Cellular Component	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GRIP	IPR000237	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA26

Fln msg: your sequence is longer than subject: 327 - 210

Fln protein: MDLVAAQEAALKDAQREAALAFAERDRALKALQDSVKDHETELAARAVSLIDAEQRIKDMAMKLESTKAHLRSEQEAWQSTLSNVQETWRLKYEALEAQTSKTAITSSDEDLNSFRMNYEKLKEEHDSFREMANKIIEAKDNEISRLLDDNNNLQRSLRATHLVQKDHSNNQASAQQDSSASVVAVAEQQILVLARQQAQREEELAQRQRHIEALQEEIAELERENRLHHQQEMMLKSELRNMDRVQKRDGVDMTYLKNVILKLLETGEVEALLPVIGTLLQFSPEEIRKCQETYNALPNVPLSGAAAVVDAAASAPRSFFSRFTL*

Protein Length: 328

Fln nts: GAGAAAGAAAGTTGGGAGGCTGCACTACAAACAGTGAGAGCTAAGCTTGAAGAGTCAGAAAAGGCCTGCTTGCAATATGAGATTGATGCAGCAAAGACAAGAAGTGAATTGGAGTCGGAGTTGGCAGGATTACAGCAGGTCCTTAAAGGAACTAAAGAGGAACTTTTATCTAGTAGAGCAGAGATTAGTCGATTAGAAGATGACTTTAAAGCTTACAAGAATCGTGCTCATGCTCTTCTTCAAAAAAAGGATGCTGAGCTGTCTGCTGTAAAGGAT_-_ATGGATCTTGTAGCTGCTCAAGAGGCTGCTTTAAAGGATGCCCAAAGAGAGGCAGCTTTAGCCTTTGCTGAAAGAGATCGTGCTCTGAAAGCTCTTCAAGATTCTGTCAAAGATCATGAAACTGAGCTTGCAGCCAGGGCTGTGTCTCTCATAGATGCAGAACAGAGGATTAAAGACATGGCAATGAAACTTGAGTCCACAAAAGCTCATCTGCGATCAGAACAAGAAGCATGGCAGAGTACTCTCTCGAATGTTCAAGAAACATGGCGTTTAAAATATGAGGCTCTAGAGGCTCAAACAAGTAAAACGGCTATAACAAGTTCAGATGAAGACCTAAATTCATTCAGGATGAACTATGAGAAACTTAAGGAGGAGCATGATTCGTTTCGGGAAATGGCTAACAAAATCATTGAGGCAAAGGACAATGAAATATCTCGCCTTTTAGATGATAATAACAACCTACAAAGATCACTGCGTGCAACTCATCTGGTGCAGAAAGACCATAGTAACAATCAAGCTTCAGCACAACAAGATTCATCTGCATCTGTTGTTGCAGTGGCAGAGCAGCAAATTTTGGTCCTGGCTAGGCAACAAGCTCAAAGGGAGGAAGAGCTTGCACAGCGTCAGCGACATATTGAAGCCCTTCAAGAAGAGATTGCAGAGCTTGAGCGTGAGAATCGTCTCCACCATCAACAGGAAATGATGCTTAAGAGTGAGTTGCGGAACATGGATAGGGTTCAGAAGCGTGATGGTGTCGATATGACATATCTGAAGAATGTTATTTTGAAATTGCTTGAAACTGGAGAAGTTGAGGCTCTCCTCCCAGTCATTGGAACGTTATTGCAGTTCAGCCCCGAAGAGATCAGGAAATGTCAGGAAACCTATAATGCTCTACCAAATGTACCACTAAGTGGTGCTGCAGCTGTGGTTGATGCTGCAGCCTCTGCACCACGCTCCTTTTTTTCCAGATTTACACTTTGA___GGTGGAGGATAAGTGGAGTATATTGAATTTTTGTGCATTGGATACTCTGATCCTTATTGCATTATGCATCACTTCTTTAGCAATGATCTGTTTTAAGATATAGTTTCTTCATGGGAAAATTAGTGAACATCTGCTCTTGCACACCATATTGACACCGTGGATCGTCTACAGATTATGTTAAGGAATGGCTGGCAGCAGCAGTGGTGTGCATGAAACGGAGGCTTATGAGGTTATCTAAGCGATCAGTTACTTGGCATACAGTTTCACACTCTAATTACAATAGCCTACCTTTTTCGGAAATGGATTTGGGGCAAGTTATGTCTGTCATCCATGTAATCCAGGCCTGTGAAAAGGATGAGTTCACTGTTTCAGATTTTCTGGAATATTGGACTGGATTCAGCTACTGGTCGGACACATCTTCAGTGCCCTTGTTGATAAAAATGAACCATTATTTGATCTTTGACACTTAGTGAAGAACTTGTTCCATTCTACCAATTAGGGATTTTCTGTTCCATTCTACCAAAGTAGGGATTTTCTGAAGTTTTCGAAAACATTTTTTTAATGATTATTATGCTATTTGCCATGTATGACTGGTTCATCTCTTGTATACTAAGATTATTTGGACAGCAATCTGTTCGTGAAGCAGTCCATCACTAGCATATAAAGCTTGTATCAGCTAGGCCCCAGGGGGTTCAAAACTGTGATGGTGGTATGTTGGATCAGCAGGCATACTTGAAAACATGATTATTCCTTCCAAACTTCTCAATTCCTAAGACATTCAATTATTTTAATCCATACCATTTTCTGCACCTCTTTAGCAACAACGCATTAAGAGGTCAGTAAATGTATGTATTTGAATTATTAACATAATGCATATTTATACTTGGAAGGATATGATCAAATATTTGATTCCAAGCGGACCTCAAATCTCTGTGTGTTCCCATTACAAATAAATAAGGTCGTGATTTGTTTT

Fln Alignment:

sp_v1.1_unigene3143___MNYEKLKEEHDSFREMANKIIEAKDNEISRLLDDNNNLQRSLRATHLVQKDHXXXXXXXXXXXXXXXXXXXXXXILVXXXXXXXXXXXXXXXXXHXXXXXXXXXXXXXXNRLHHQQEMMLKSELRNMDRVQKRDGVDMTYLKNVILKLLETGEVEALLPVIGTLLQFSPEEIRKCQETYNALPNVPLSG
D5AA26______________MNYEKLKEEHDSFREMANNIIEAKDNEISRLLDENNNLQRSLRANHLVEKDRGRNQASVQQDSSVSVVAVAEQQILILARQQAQREEELAQRQRHIEALQEEIAELERENRLHHQQEVMLKSELRNMDRVQKRDGVDMTYLKNVILKLLETGEVEALLPVIGTLLQFSPEEIRKCHETYNAVPNVPLSG

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1438	25			75	0.996473
1440	25		75		0.996473
1441		25		75	0.996473
1442		75		25	0.996473
1444	75			25	0.996473
1445		75	25		0.996473
1668			12	87	0.992554
1675	88		11		0.923564
1682	11		88		0.923564
1683	11		88		0.923564
1772			25	75	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain