SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3136

Length: 3078 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3136
CGTCGTGACCTTGGCTGTCACTCAATTCTTAATTCTACAGCCGGGAAGTTTGCGATTTCGTGTCTCTCTCCCCTCCATGTCAACCAGGCAGGCGTAAGCGGGGATGTCAATGGATTCTTTTAGAGGGCATTCCACAAACAAGCTTGTTCCTGTTTCAAGCATGGAAGATACACAGGACTCTGATAAGTCAGCAGCCCCTCCTTTGGAAGATGAAGAAACTTCAGTTTACAATGGCTATCGTCTCCCTCCAATAGATATTAGAAATATTGTTGATGCACCACCAACTCCTGCTCTGTCTTTTTCTCCTAATAGAGATAAGATTTTATTTCTCAAACGTAGGGCCTTACCTCCACTCTCAGAGTTTGCAAGACCAGAAGAAAAGCTTGCTGGAATCCGTATTGATGGAAACTGTAATACAAGAAGCCGTATGTCATTTTACACTGGAATAGGGATCCATAAACTGATGGAAGATGACACTCTAGGACCAGAGATTGAAGTCTTTGGTTTCCCAGATGGTGCAAAGATCAATTTTATAAGTTGGTCACGAGATGGTCGGTATCTATCTTTTACTATTCGGTTTGATCAGGGGGATAATACAAGCAGTAAGTTGAGTCTTTGGGTCGCGGATGTAGAAACAGGGCAGGCAAGGCCATTATTCACCACATCTGAAATCTATGTAAATGCAATTTTTGACAACTTTGTGTGGATTGATGAGTCGACACTAGTTGTGTGTATCATACCTTTATCTCGTGGAGAACCTCCAAAAAAGCCACTGATTCCATCGGGTCCAAAGATTCAATCCAATGAGGACAAAAATGTAGTGCAATTGAGAACCTATCAAGATCTTTTGAAAGACGAATATGATGCAGACCTCTTTGATTACTATGCGACAACACAATTACTTTGGGTCAAATTAGATGGAACAACGAAAGCTATAGGACCACCAGCCATCTATACATCCATAAATCCTTCTCCTGATAATAAATATCTCCTTGTCACCTCAATTCACAGGCCGTACTCATTTATTGTCCCCTTGTGGAAGGTTTCCCAAGAAAGTTGAAGTATGGACCTCTGATGGAAAATTTGTCCGTGAGATATGTGATCTTCCTCTCGCGGAAAAAATTCCAATAACTTTTAACAGTGTTCGAAAAGGCATGAGGTCTATCAATTGGCGATCTGATAAGCCTTCATTGCTCTACTGGGCAGAGACACAAGATGGCGGTGATGCAAAGGTGGATGTTTCTCCTCGTGATATTATCTACACACAATCTGCTGAACCAAAGCTTGGTGAGGAACCTGAGGTTCTTCATAAGCTAGATCTCCGTTTTGGAGGGATATCATGGGGTGATGATTCATTGGCTCTGGTGTACGAGTCATGGTATAAAACAAGGCGCACACGGACATGGGTAATATCTCCAGCTGATAGAGAAGGGGCTCGTATATTATTTGACAGGTCATCAGAGGACGTGTATTCTGATCCAGGCTCACCAATGCTTCGGAGGACCTTGTTAGGAACTTACGTTCTTGCAAAGATAAAAAAACAAGACGGAAGTACATATCTCTTGTTGAATGGATATGGGGCAACACCAGAAGGAAATGTTCCTTTTCTTGATCTTTTAAACATAAACACAAGTGAAAAGGAGCGTATATGGGAAAGTGACAAGGAAAAGTACTACCAGTCAGTTTCTGCTTTGATGTCTGATCAGTACGATGGTGATATGGAGCTCAACAAACTGAAAATTCTTTTTTCTAAGGAGTCAAAAACAGAAAATCCACAGTTTTTCTTGCAGAGCTGGCCAGATAAAAGAATTACTCAAATTACAAATTTTCCCCACCCATACCCTCAACTCTCTAACTTGCAGAAAGAGATGATTAGATACAAACGTAAAGATGGGGTGCAGCTTACTGCAACCTTATATTTACCTCCTGGTTATGATGCTGCGAAGGATGGACCTCTTCCAACATTGGTATGGTCTTACCCGGGAGAATTTAAGAGTAAAGATGCAGCTAGCCAAGTGCGTGGTTCCCCCAATGAATTTGCTGGAATAGGTTCAACATCACCGCTTTTATGGTTGGTTAGAGGGTTTGCTATATTGTCTGGACCAACTATTCCAATTATTGGAGAGGGAGATGAGGAGGCAAATGACAGGTATGTTGAACAGCTGGTGGCTAGTGCCGAGGCTGCAGTTGATGAAGTTGTCAGACGAGGGGTTACCCATCCAAATAAAATAGCTATTGGTGGTCACTCATATGGAGCATTCATGACTGCTAATCTTCTGGCACATGCACCTCATCTTTTTTCCTGTGGTATTGCTCGGTCAGGAGCTTATAACAGAACACTTACTCCATTTGGATTTCAGAATGAAGAGAGGACATTATGGGAAGCAACAAAGACGTATATTGATATGAGCCCGTTTATGTTAGCGAATCAAATAAAGAAGCCTATTTTGCTTGTCCACGGAGAAGAGGACAACAATTCTGGAACTCTCACAATGCAGTCAGAGCGGTTCTTCAATGCGCTGAAAGGACATGGTTCACTCTGTCGCCTTGTGCTTCTTCCCTATGAAAGCCATGGCTACTATGCCCGTGAAAGCATAATGCATTTGCTCTTTGAGACTGACAGATGGCTAGATAAGTTCTGTGTGAATTCCCCGGACAGTACTTCTGATGGCAAATCCTCTGGCGAAATGGAGAAAGCTGTTGGAGAGGATAAATTTGTTTTGGCTGGAAAGGGTGGAAGTACCAACCCAGAAGAAGATTCTGAACACAATTCTTTCTGTTCATTGCCAAGGTCATCTTTGTGACAAAATTTCTGTCTGCCATTTGGTGTCTGTTCAAGGTTTAATCTGAGAGAAATTTCTCAATTATTTATTTATTATATATTTTTAATGGCCATTCGTGTCAGATCACGTCAACAGAAGCATCTGTAGGCTGATGCCTCCTAGAATTTCAAACAAGTCTTGCATTGACAGAGGAATGTCATGAAATCACTTCTACACAATTGCTTAAGAATAAATGTAACCAGTGATAGTGATTTTGTCTACCCTTGTTTTAATTTCTCATCTGCACCATTTTTAG

Ace file of the UniGene sp_v1.1_unigene3136

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dipeptidyl-peptidase, putative n=1 Tax=Ricinus communis RepID=B9RNE4_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Six-bladed beta-propeller, TolB-like	IPR011042	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNQ5

Fln msg: your sequence is longer than subject: 550 - 103

Fln protein: MRSINWRSDKPSLLYWAETQDGGDAKVDVSPRDIIYTQSAEPKLGEEPEVLHKLDLRFGGISWGDDSLALVYESWYKTRRTRTWVISPADREGARILFDRSSEDVYSDPGSPMLRRTLLGTYVLAKIKKQDGSTYLLLNGYGATPEGNVPFLDLLNINTSEKERIWESDKEKYYQSVSALMSDQYDGDMELNKLKILFSKESKTENPQFFLQSWPDKRITQITNFPHPYPQLSNLQKEMIRYKRKDGVQLTATLYLPPGYDAAKDGPLPTLVWSYPGEFKSKDAASQVRGSPNEFAGIGSTSPLLWLVRGFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVDEVVRRGVTHPNKIAIGGHSYGAFMTANLLAHAPHLFSCGIARSGAYNRTLTPFGFQNEERTLWEATKTYIDMSPFMLANQIKKPILLVHGEEDNNSGTLTMQSERFFNALKGHGSLCRLVLLPYESHGYYARESIMHLLFETDRWLDKFCVNSPDSTSDGKSSGEMEKAVGEDKFVLAGKGGSTNPEEDSEHNSFCSLPRSSL*

Protein Length: 551

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTTAATTCTACAGCCGGGAAGTTTGCGATTTCGTGTCTCTCTCCCCTCCATGTCAACCAGGCAGGCGTAAGCGGGGATGTCAATGGATTCTTTTAGAGGGCATTCCACAAACAAGCTTGTTCCTGTTTCAAGCATGGAAGATACACAGGACTCTGATAAGTCAGCAGCCCCTCCTTTGGAAGATGAAGAAACTTCAGTTTACAATGGCTATCGTCTCCCTCCAATAGATATTAGAAATATTGTTGATGCACCACCAACTCCTGCTCTGTCTTTTTCTCCTAATAGAGATAAGATTTTATTTCTCAAACGTAGGGCCTTACCTCCACTCTCAGAGTTTGCAAGACCAGAAGAAAAGCTTGCTGGAATCCGTATTGATGGAAACTGTAATACAAGAAGCCGTATGTCATTTTACACTGGAATAGGGATCCATAAACTGATGGAAGATGACACTCTAGGACCAGAGATTGAAGTCTTTGGTTTCCCAGATGGTGCAAAGATCAATTTTATAAGTTGGTCACGAGATGGTCGGTATCTATCTTTTACTATTCGGTTTGATCAGGGGGATAATACAAGCAGTAAGTTGAGTCTTTGGGTCGCGGATGTAGAAACAGGGCAGGCAAGGCCATTATTCACCACATCTGAAATCTATGTAAATGCAATTTTTGACAACTTTGTGTGGATTGATGAGTCGACACTAGTTGTGTGTATCATACCTTTATCTCGTGGAGAACCTCCAAAAAAGCCACTGATTCCATCGGGTCCAAAGATTCAATCCAATGAGGACAAAAATGTAGTGCAATTGAGAACCTATCAAGATCTTTTGAAAGACGAATATGATGCAGACCTCTTTGATTACTATGCGACAACACAATTACTTTGGGTCAAATTAGATGGAACAACGAAAGCTATAGGACCACCAGCCATCTATACATCCATAAATCCTTCTCCTGATAATAAATATCTCCTTGTCACCTCAATTCACAGGCCGTACTCATTTATTGTCCCCTTGTGGAAGGTTTCCCAAGAAAGTTGAAGTATGGACCTCTGATGGAAAATTTGTCCGTGAGATATGTGATCTTCCTCTCGCGGAAAAAATTCCAATAACTTTTAACAGTGTTCGAAAAGGC_-_ATGAGGTCTATCAATTGGCGATCTGATAAGCCTTCATTGCTCTACTGGGCAGAGACACAAGATGGCGGTGATGCAAAGGTGGATGTTTCTCCTCGTGATATTATCTACACACAATCTGCTGAACCAAAGCTTGGTGAGGAACCTGAGGTTCTTCATAAGCTAGATCTCCGTTTTGGAGGGATATCATGGGGTGATGATTCATTGGCTCTGGTGTACGAGTCATGGTATAAAACAAGGCGCACACGGACATGGGTAATATCTCCAGCTGATAGAGAAGGGGCTCGTATATTATTTGACAGGTCATCAGAGGACGTGTATTCTGATCCAGGCTCACCAATGCTTCGGAGGACCTTGTTAGGAACTTACGTTCTTGCAAAGATAAAAAAACAAGACGGAAGTACATATCTCTTGTTGAATGGATATGGGGCAACACCAGAAGGAAATGTTCCTTTTCTTGATCTTTTAAACATAAACACAAGTGAAAAGGAGCGTATATGGGAAAGTGACAAGGAAAAGTACTACCAGTCAGTTTCTGCTTTGATGTCTGATCAGTACGATGGTGATATGGAGCTCAACAAACTGAAAATTCTTTTTTCTAAGGAGTCAAAAACAGAAAATCCACAGTTTTTCTTGCAGAGCTGGCCAGATAAAAGAATTACTCAAATTACAAATTTTCCCCACCCATACCCTCAACTCTCTAACTTGCAGAAAGAGATGATTAGATACAAACGTAAAGATGGGGTGCAGCTTACTGCAACCTTATATTTACCTCCTGGTTATGATGCTGCGAAGGATGGACCTCTTCCAACATTGGTATGGTCTTACCCGGGAGAATTTAAGAGTAAAGATGCAGCTAGCCAAGTGCGTGGTTCCCCCAATGAATTTGCTGGAATAGGTTCAACATCACCGCTTTTATGGTTGGTTAGAGGGTTTGCTATATTGTCTGGACCAACTATTCCAATTATTGGAGAGGGAGATGAGGAGGCAAATGACAGGTATGTTGAACAGCTGGTGGCTAGTGCCGAGGCTGCAGTTGATGAAGTTGTCAGACGAGGGGTTACCCATCCAAATAAAATAGCTATTGGTGGTCACTCATATGGAGCATTCATGACTGCTAATCTTCTGGCACATGCACCTCATCTTTTTTCCTGTGGTATTGCTCGGTCAGGAGCTTATAACAGAACACTTACTCCATTTGGATTTCAGAATGAAGAGAGGACATTATGGGAAGCAACAAAGACGTATATTGATATGAGCCCGTTTATGTTAGCGAATCAAATAAAGAAGCCTATTTTGCTTGTCCACGGAGAAGAGGACAACAATTCTGGAACTCTCACAATGCAGTCAGAGCGGTTCTTCAATGCGCTGAAAGGACATGGTTCACTCTGTCGCCTTGTGCTTCTTCCCTATGAAAGCCATGGCTACTATGCCCGTGAAAGCATAATGCATTTGCTCTTTGAGACTGACAGATGGCTAGATAAGTTCTGTGTGAATTCCCCGGACAGTACTTCTGATGGCAAATCCTCTGGCGAAATGGAGAAAGCTGTTGGAGAGGATAAATTTGTTTTGGCTGGAAAGGGTGGAAGTACCAACCCAGAAGAAGATTCTGAACACAATTCTTTCTGTTCATTGCCAAGGTCATCTTTGTGA___CAAAATTTCTGTCTGCCATTTGGTGTCTGTTCAAGGTTTAATCTGAGAGAAATTTCTCAATTATTTATTTATTATATATTTTTAATGGCCATTCGTGTCAGATCACGTCAACAGAAGCATCTGTAGGCTGATGCCTCCTAGAATTTCAAACAAGTCTTGCATTGACAGAGGAATGTCATGAAATCACTTCTACACAATTGCTTAAGAATAAATGTAACCAGTGATAGTGATTTTGTCTACCCTTGTTTTAATTTCTCATCTGCACCATTTTTAG

Fln Alignment:

sp_v1.1_unigene3136___MQSERFFNALKGHGSLCRLVLLPYESHGYYARESIMHLLFETDRWLDKFCVNSPDSTSDGKSSGEMEKAVGEDKFVLAGKGGSTNPEEDSEHNSFCSLPRSSL
B8LNQ5______________MQSERFFNALKGHGSLCRLVLLPFESHGYNSRESIMHLLFETDRWLDKFCVNSPDSISDPKSCGEMEQAAGEDKFVLVGKGGSTNPEEDSEHDSFYSMPRSAL

SNPs (tot: 66)

Position	A %	C %	G %	T %	Probability
119		33		66	0.997452
120			33	66	0.997452
122	66	33			0.997452
125			66	33	0.997452
127	33		66		0.997452
129	66	33			0.997452
133		66	33		0.997452
134	66		33		0.997452
136	66			33	0.997452
137	66		33		0.997452
138	66			33	0.997452
141	66	33			0.997452
142			66	33	0.997452
410		18		81	0.999994
413	81	18			0.999994
414	81		18		0.999994
419	81	18			0.999994
420			81	18	0.999994
421	81			18	0.999994
422	81		18		0.999994
425		81		18	0.999994
428	81	18			0.999994
429	18			81	0.999994
430		18	81		0.999994
732			76	23	1.0
735		23		76	1.0
920			88	11	0.923564
928	33		66		1.0
1035	50		50		1.0
1190	88		11		0.923564
1192		11		88	0.923564
1196		88	11		0.923564
1197	11			88	0.923564
1198	88	11			0.923564
1201			88	11	0.923564
1205	88			11	0.923564
1207	75	8		16	0.99999
1208		16	83		0.999991
1211	75		8	16	0.99999
1547	87		12		0.992554
1568		12		87	0.992554
1597	87		12		0.992554
1720	80		20		0.995493
1721			20	80	0.995493
1834		75		25	0.996473
1839		80		20	0.995493
1847		80		20	0.995493
1864	20		80		0.995493
2036	20		80		0.995493
2046		25	75		0.996473
2059	66		33		1.0
2103	16		83		0.994512
2206	83		16		0.994512
2341	66		33		0.997452
2461		80		20	0.995493
2464	80		20		0.995493
2527	80		20		0.995493
2531		83		16	0.994512
2532	83		16		0.994512
2533			16	83	0.994512
2598		11		88	0.923564
2649	90	10			0.90298
2652		90	10		0.90298
2653		90	10		0.90298
2657		10	90		0.90298
3071	25	75			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
2865	2877	TTAT TTAT TTAT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain