SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3113

Length: 1321 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3113

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Laccase n=1 Tax=Pinus taeda RepID=Q9AUI2_PINTA	-	-	86%
FL-Next	tr=Laccase; Pinus taeda (Loblolly pine).	-	-	97%
Blast2go	protein	-	-	78%

Source	InterPros	Term	Type	Identity
Blast2go	Multicopper oxidase, type 1	IPR001117	-	78%
Blast2go	Multicopper oxidase, copper-binding site	IPR002355	-	78%
Blast2go	Cupredoxin	IPR008972	-	78%
Blast2go	Multicopper oxidase, type 2	IPR011706	-	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9AUI2

Fln msg: your sequence is shorter than subject: 355 - 591

Fln protein: YLLRIINAALNDELLLAIANHSMTVVEVDAVYVKPFHTDALVITPGQTTNVLFTTNATVNVGGVNQFYIAARPFATGGGTFDNSTVAGIVSYNISNSNTSSTIMMPKLPALNDTSFAANFSAKLRSLATPQFPALVPQTVDKKLFFTVGLGLNPCPKGMGNATCQAPNGTRFTASVNNISFVLPNTALLQSHYFKQMKGVYKTNFPDNPPFPFNYTGTPPNNTQAVNGTRVKVLPFNTTVQLILQDTSIFSTDSHPVHLHGFNFFVVGQGVGNYNESTDAPNFNLIDPVERNTVGVPKGGWAAIRFRADNPGVWFMHCHLEVHTSWGLKMAWVVKNGKGPLQTLPPPPSDLPPC*

Protein Length: 356

Fln nts: ATATCTTCTTCGAATCATCAATGCTGCACTCAATGATGAGCTCTTaCTTGCCATTGCAAATCACAGCATGACTGTGGTGGAAGTAGAcGCAGTTTATGTGAAGCCTTTCCAtACAGACgCTCTTGTTATAACACCTGGCCAAACCACCAATGTGTTGTTCACTACTAATGCTACTGTTAATGTTGGAGGAGTTAACCAGTTTTACATAGCAGCTCGCCCATTTGCTACAGGTGGTGGAACATTTGATAACTCCACTGTTGCGGGAATTGTGAGCTACAACATTTCCAACTCTAATACCTCTTCCACCATTATGATGCCTAAACTCCCAGCCCTTAATGACACTTCCTTTGCAGCCAACTTTAGTGCAAAACTTAGAAGCTTGGCTACCCCACAATTCCCTGCACTGGTTCCTCAAACAGTTGACAAAAAACTTTTCTTTACAGTTGGGCTAGGACTGAATCCTTGTCCAAAGGGGATGGGAAATGCCACATGCCAGGCACCCAATGGGACAAGATTCACTGCGTCTGTCAACAACATTTCTTTTGTTCTCCCAAACACTGCTCTTCTTCAGTCCCACTATTTCAAGCAGATGAAAGGAGTTTATAAGACTAATTTTCCAGACAATCCTCCATTCCCATTCAATTACACTGGCACTCCACCAAATAATACACAGGCTGTGAATGGGACTAGAGTAAAAGTCCTTCCCTTTAACACAACTGTTCAATTGATTCTTCAAGACACCAGCATCTTCAGCACAGATAGTCACCCTGTCCATCTCCATGGCTTCAATTTCTTTGTGGTGGGCCAAGGTGTTGGAAACTACAATGAATCAACAGATGCACCAAATTTTAACCTCATTGACCCTGTTGAGAGAAACACTGTGGGAGTTCCCAAAGGAGGTTGGGCTGCTATCAGATTCCGTGCAGACAATCCAGGGGTGTGGTTCATGCACTGTCATTTGGAGGTTCACACATCATGGGGGCTGAAGATGGCGTGGGTAGTAAAGAACGGAAAAGGGCCCCTTCAAACTCTCCCACCTCCCCCTTCTGACCTCCCTCCTTGCTGA___TCTTCTTCCTTCCTTCCCGTTACCACCATCAGTTTCATTTCATTTTATTTTTGTTTCAGATGTTGATGTTGGGTTTTTGTCAGGAAGATTTCATAATAAATAGAATGCCACCTTTGGCCTCTCTTCTCAAGGAGCCTTTTCATAGAACGAGGAGGATGGCTATTTATTCAAGGTGAGAAAAAGGCAAAAAGGGGCAACCAATCAGAGTGAAATAGAACTGTATCGAATCAATACAAGTGTTTGGTACATGAATAA

Fln Alignment:

sp_v1.1_unigene3113___YLLRIINAALNDELLLAIANHSMTVVEVDAVYVKPFHTDALVITPGQTTNVLFTTNATVNVGGVNQFYIAARPFATGGGTFDNSTVAGIVSYXXXXXXXXXXXMMPKLPALNDTSFAANFSAKLRSLATPQFPALVPQTVDKKLFFTVGLGLNPCPKGMGNATCQAPNGTRFTASVNNISFVLPNTALLQSHYFKQMKGVYKTXXXXXXXXXXXYTGTPPNNTQAVNGTRVKVLPFNTTVQLILQDTSIFSTDSHPVHLHXXXXXXXXXXXXXXXESTDAPNFNLIDPVERNTVGVPKGGWAAIRFRADNPGVWFMHCHLEVHTSWGLKMAWVVKNGKG
Q9AUI2______________YLLRIINAALNDELFLAIANHSMTVVEVDAVYVKPFQTNTLVITPGQTTNVLFTTNATINVGGVNQFYIAARPFVTGGGTFDNSTVAGIVSYNISNSNTSSTIMMPKLPALNDTSFAANFSAKLRSLATSQFPALVPQTVDKKLFFTVGLGLNPCPKGMGNATCQAPNGTRFTASVNNISFVLPNTALLQSHYFKQMKGVYKTNFPDNPPFPFNYTGTPPNNTQAVNGTRVKVLPFNTTVQLILQDTSIFSTDSHPVHLHGFNFFVVGQGVGNYNESTDAPNFNLIDPVERNTVGVPKGGWAAIRFRADNPGVWFMHCHLEVHTSWGLKMAWVVKNGKG

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
89		40		60	1.0
113	40		60		1.0
120	40			60	1.0
137		33		66	1.0
158	33		66		1.0
218		60		40	1.0
224		20		80	0.995493
226		60		40	1.0
262		66		33	1.0
390		71		28	1.0
398		71		28	1.0
419	85	14			0.99515
428	66		33		1.0
441	83		16		0.996397
444	33		66		1.0
452	66		33		1.0
536		75		25	0.997389
573			75	25	0.997389
837	50		50		1.0
849		50		50	1.0
903	50			50	1.0
915		75	25		0.996473
916	75		25		0.996473
939	25		75		0.996473
954		50		50	1.0
963	25		75		0.996473
1065		80		20	0.997356
1086		50	50		1.0
1105	75		25		0.997389
1123		33		66	1.0
1150	10	90			0.993455
1151	70			30	1.0
1152	27		72		1.0
1163		27		72	1.0
1172		81	18		1.0
1173	90		9		0.989893
1177		81		18	1.0
1199	54		45		1.0
1201		27	72		1.0
1217		60		40	1.0
1226			30	70	1.0
1229		90		10	0.991192
1245	88		11		0.992493
1254	16	83			0.998057
1281	83		16		0.996385

SSRs (tot: 1)

Start position	End position	Sequence	Length
1071	1083	CTTC CTTC CTTC C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain