SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3110

Length: 2385 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3110
CTTGGTATCAGAGCCAGTGAGGGCCTAGCCCCTCGTGGGCTTGGCTGCTCCTGGGCTGAGGGAATGAGTGTAGTATATGTTTGTTTGTCCATCATATCTGTTTGAGAGAACTGTAAGCCTGTAGCAGCGAAGACGCGCAGAGGGACTTGTCGCTGCACCATTATCACCGTGAGAGACCTGGTAAGAAGTCAATTGGTCTCGGTTTCTGGATCCGCAAGTAAAGAATTGTTCAAACTGGTTAATGTCGGGCTGCTTCACATGTGACGGATTAGCGCATGAGGAAAAGACTCCACCGTGTGCGAGTGAGTCTTTTTCCTTAAGTAGCTAGTTCTCCTCTCTCAGCGTCGGCCGTGACCTCCGCGTATTTGCTATTCTCTGCGAGGATCGATGGAGGCAGGAGACCTTGAACAAATACCGAGTGAATGCGCCTGAAGACCGAAATTTCGTGGCAGGTTCCTCTGAATTTCCTTGCCAATTCCTTGGAAGAAACTCAATCTGTAAGGTATTCAGAGGGCCAAGTCACACATTTCAATTTGCGTCGTCAAAGGTAACTCAAGATCGATTGACGTTGCTCTGTGTAGGTTTGCTTTCGCAGATTTTGCATTTGCATTCATTCTTTAAAAGGCCTATTAGTGCCAGCCCCAGGGAAGACCAGAGACCTTTAATTCGTTCATTCATTCTTTAAAGGCCTATTAGTGCCCCAGGGAAGACCAAAGATCAGAGACCTTTTAAGACGTTCCAGGTTGTAGATTTGATTGTCGTGTCGCCATTGACAATGGCTCCGTTACGGGGTTTGATTTTCTCGATTCTTGCATTCTCTGTGATGCTACCGGCAATGCACACATGGTCGCCAGCAGAGGCCATCAGATCTTCGCAATTTCAGAGGTTTCAGGTTCCGGCCAAGTTTAAGGAAGCTCCGGCGTTCCGCAATGGGAATGAGTGCCCTCTCTTGACTCCTGAACCGAAGGGATTGTTCTGTAGCGCGGCTTCTGTGCACATCGCCATGACATTAGACACCGAGTATCTGAGAGGATCCATGGCTGCCGTTCTCTCCGTTCTCCAGCATGCTTCTTGCCCAGAAAACGTGTTCTTCCATTTCTTGATTTCCGGTAACAAGCACGAGCTGCAGGAGGTTGTGAGAACGACTTTTCCTTATCTGAAATTTAAGACGTATTATTTCGACAAAGGCCTTGTCAAAGGCCTCATATCGACGTCCATAAGGCAGGCTTTGGAGCAGCCGCTGAATTATGCCCGGACTTATCTGGCCGATATCTTGGATCCCTGTGTGGAGAGAGTCATTTATCTTGATTCCGACCTTATTGTTATCGATGATATTGCGAAGCTGTGGGAAATCGATCTTGGATCCAGCACTATCGGTGCACCTGAATATTGCCATGCGAATTTCACAAAATACTTCAGTGATGCCTTTTGGTCGGACAGCACTCTGGCGAAAACGTTCGAAGGAAGGAAACAGCCGTGCTACTTTAATACCGGGGTAATGGTGATCGATATTGCCAAATGGCGGCAGAACTTTTACCGGAAAATGATTGAACATTGGATGGAAGTCCAGAAGGAGAAGCGGATTTACGAGCTCGGATCGTTGCCGCCTTTTCTTCTGGTTTTCGCCGGAAAGCTGAAACCTGTTGATCACAGGTGGAATCAGCATGGACTCGGAGGAGATAATGTGGTCGGAAGCTGCCGTTCTCTGCACCCAGGCCCTGTTAGTTTGCTACACTGGAGCGGGAAAGGGAAGCCATGGTTGCGCCTTGATGCGAACAAGCCTTGCCCCTTGGATGCTCTATGGGCTCCTTATGATCTCCATATCTCTTCTCAGCGGCTGAGTTCGTCGAGATGAAGGGGAAGGATTCGAAAGGAAGCCATTCTTTTTTTGGCCTTTCTGAAGAACAGGGCATTACCTGCTACATATTCAAGATTCGGAAGGTCTACTGGTTTGTCCCATGGTTGCAAGCTTGATGATTAATTAAAGCGGGGAATTAAGGTCAGTGTTTCTCTCTGACAGGATACCCATTGATATGATCCTGAGGATTTGAAATTCGATGTCCTTAGCTGATCGATTTTGTATTTAAACCTGAAACACGTGGGGTGTTTTTGTGAAAGTTGATTACTCTTGTCCTCAGAGGAACCACCGTTCCTGCTGGTTTGGGCGACCATTGGATTTGTATTACAATTCTTTTATTTTACTCTCTCCTTCCCCTGATTGGTTCCTGCTGGTTTGGGCGACCATTGGATTTGTATTACAATTCTTTTATTTCACTCTCTCCTTCCCCTGATTTTATTCATTAAATTTGTATGGCTTTGGTCTCTGTTATGTTGACAAANATANATGGTCATTTTCTCAACATTTTAAATGCAATGCAGAGCTCT

Ace file of the UniGene sp_v1.1_unigene3110

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable galacturonosyltransferase-like 7 n=2 Tax=Arabidopsis RepID=GATL7_ARATH	-	-	63%
FL-Next	sp=Probable galacturonosyltransferase-like 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	glycosyl transferase	-	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8VYF4

Fln msg:

Fln protein: MAPLRGLIFSILAFSVMLPAMHTWSPAEAIRSSQFQRFQVPAKFKEAPAFRNGNECPLLTPEPKGLFCSAASVHIAMTLDTEYLRGSMAAVLSVLQHASCPENVFFHFLISGNKHELQEVVRTTFPYLKFKTYYFDKGLVKGLISTSIRQALEQPLNYARTYLADILDPCVERVIYLDSDLIVIDDIAKLWEIDLGSSTIGAPEYCHANFTKYFSDAFWSDSTLAKTFEGRKQPCYFNTGVMVIDIAKWRQNFYRKMIEHWMEVQKEKRIYELGSLPPFLLVFAGKLKPVDHRWNQHGLGGDNVVGSCRSLHPGPVSLLHWSGKGKPWLRLDANKPCPLDALWAPYDLHISSQRLSSSR*

Protein Length: 361

Fln nts: CTTGGTATCAGAGCCAGTGAGGGCCTAGCCCCTCGTGGGCTTGGCTGCTCCTGGGCTGAGGGAATGAGTGTAGTATATGTTTGTTTGTCCATCATATCTGTTTGAGAGAACTGTAAGCCTGTAGCAGCGAAGACGCGCAGAGGGACTTGTCGCTGCACCATTATCACCGTGAGAGACCTGGTAAGAAGTCAATTGGTCTCGGTTTCTGGATCCGCAAGTAAAGAATTGTTCAAACTGGTTAATGTCGGGCTGCTTCACATGTGACGGATTAGCGCATGAGGAAAAGACTCCACCGTGTGCGAGTGAGTCTTTTTCCTTAAGTAGCTAGTTCTCCTCTCTCAGCGTCGGCCGTGACCTCCGCGTATTTGCTATTCTCTGCGAGGATCGATGGAGGCAGGAGACCTTGAACAAATACCGAGTGAATGCGCCTGAAGACCGAAATTTCGTGGCAGGTTCCTCTGAATTTCCTTGCCAATTCCTTGGAAGAAACTCAATCTGTAAGGTATTCAGAGGGCCAAGTCACACATTTCAATTTGCGTCGTCAAAGGTAACTCAAGATCGATTGACGTTGCTCTGTGTAGGTTTGCTTTCGCAGATTTTGCATTTGCATTCATTCTTTAAAAGGCCTATTAGTGCCAGCCCCAGGGAAGACCAGAGACCTTTAATTCGTTCATTCATTCTTTAAAGGCCTATTAGTGCCCCAGGGAAGACCAAAGATCAGAGACCTTTTAAGACGTTCCAGGTTGTAGATTTGATTGTCGTGTCGCCATTGACA_-_ATGGCTCCGTTACGGGGTTTGATTTTCTCGATTCTTGCATTCTCTGTGATGCTACCGGCAATGCACACATGGTCGCCAGCAGAGGCCATCAGATCTTCGCAATTTCAGAGGTTTCAGGTTCCGGCCAAGTTTAAGGAAGCTCCGGCGTTCCGCAATGGGAATGAGTGCCCTCTCTTGACTCCTGAACCGAAGGGATTGTTCTGTAGCGCGGCTTCTGTGCACATCGCCATGACATTAGACACCGAGTATCTGAGAGGATCCATGGCTGCCGTTCTCTCCGTTCTCCAGCATGCTTCTTGCCCAGAAAACGTGTTCTTCCATTTCTTGATTTCCGGTAACAAGCACGAGCTGCAGGAGGTTGTGAGAACGACTTTTCCTTATCTGAAATTTAAGACGTATTATTTCGACAAAGGCCTTGTCAAAGGCCTCATATCGACGTCCATAAGGCAGGCTTTGGAGCAGCCGCTGAATTATGCCCGGACTTATCTGGCCGATATCTTGGATCCCTGTGTGGAGAGAGTCATTTATCTTGATTCCGACCTTATTGTTATCGATGATATTGCGAAGCTGTGGGAAATCGATCTTGGATCCAGCACTATCGGTGCACCTGAATATTGCCATGCGAATTTCACAAAATACTTCAGTGATGCCTTTTGGTCGGACAGCACTCTGGCGAAAACGTTCGAAGGAAGGAAACAGCCGTGCTACTTTAATACCGGGGTAATGGTGATCGATATTGCCAAATGGCGGCAGAACTTTTACCGGAAAATGATTGAACATTGGATGGAAGTCCAGAAGGAGAAGCGGATTTACGAGCTCGGATCGTTGCCGCCTTTTCTTCTGGTTTTCGCCGGAAAGCTGAAACCTGTTGATCACAGGTGGAATCAGCATGGACTCGGAGGAGATAATGTGGTCGGAAGCTGCCGTTCTCTGCACCCAGGCCCTGTTAGTTTGCTACACTGGAGCGGGAAAGGGAAGCCATGGTTGCGCCTTGATGCGAACAAGCCTTGCCCCTTGGATGCTCTATGGGCTCCTTATGATCTCCATATCTCTTCTCAGCGGCTGAGTTCGTCGAGATGA___AGGGGAAGGATTCGAAAGGAAGCCATTCTTTTTTTGGCCTTTCTGAAGAACAGGGCATTACCTGCTACATATTCAAGATTCGGAAGGTCTACTGGTTTGTCCCATGGTTGCAAGCTTGATGATTAATTAAAGCGGGGAATTAAGGTCAGTGTTTCTCTCTGACAGGATACCCATTGATATGATCCTGAGGATTTGAAATTCGATGTCCTTAGCTGATCGATTTTGTATTTAAACCTGAAACACGTGGGGTGTTTTTGTGAAAGTTGATTACTCTTGTCCTCAGAGGAACCACCGTTCCTGCTGGTTTGGGCGACCATTGGATTTGTATTACAATTCTTTTATTTTACTCTCTCCTTCCCCTGATTGGTTCCTGCTGGTTTGGGCGACCATTGGATTTGTATTACAATTCTTTTATTTCACTCTCTCCTTCCCCTGATTTTATTCATTAAATTTGTATGGCTTTGGTCTCTGTTATGTTGACAAAaATAcATGGTCATTTTCTCAACATTTTAAATGCAATGCAGAGCTCT

Fln Alignment:

sp_v1.1_unigene3110___GLIFSILAFSVMLPAMHTWSPAEAIRSSQFQRF-QVPAK--------FKEAPAFRNGNECPLLTPEPKGLFCSAASVHIAMTLDTEYLRGSMAAVLSVLQHASCPENVFFHFLISGNKHELQEVVRTTFPYLKFKTYYFDKGLVKGLISTSIRQALEQPLNYARTYLADILDPCVERVIYLDSDLIVIDDIAKLWEIDLGSSTIGAPEYCHANFTKYFSDAFWSDSTLAKTFEGRKQPCYFNTGVMVIDIAKWRQNFYRKMIEHWMEVQKEKRIYELGSLPPFLLVFAGKLKPVDHRWNQHGLGGDNVVGSCRSLHPGPVSLLHWSGKGKPWLRLDANKPCPLDALWAPYDLH
Q8VYF4______________GLFSAALVIIVLSPSLQSFPPAEAIRSSHLDAYLRFPSSDPPPHRFSFRKAPVFRNAADCAAADIDSG--VCNPSLVHVAITLDFEYLRGSIAAVHSILKHSSCPESVFFHFLVS--ETDLESLIRSTFPELKLKVYYFDPEIVRTLISTSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLIVVDDIAKLWMTKLGSKTIGAPEYCHANFTKYFTPAFWSDERFSGAFSGRK-PCYFNTGVMVMDLERWRRVGYTEVIEKWMEIQKSDRIYELGSLPPFLLVFAGEVAPIEHRWNQHGLGGDNVRGSCRDLHPGPVSLLHWSGSGKPWFRLDSRRPCPLDTLWAPYDLY

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1502			85	14	0.993533
1504	85	14			0.993533
1505	85		14		0.993533
1506		14		85	0.993533
1507	14		85		0.993533
1512			14	85	0.993533
1513		85		14	0.993533
1516		14		85	0.993533
1517	71			28	1.0
1519			14	85	0.993533
1606			87	12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain