SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3107

Length: 1130 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3107 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1298 domain containing protein	-	-	1.0e-30	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	protein	-	-	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	O-acyltransferase, WSD1, C-terminal	IPR009721	-	0.0	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE65

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 284 - 501

Fln protein: FSVCTRHL*ITGVCYRHP*VHECCC*VDHVDEPSVLMHNDSK*CDNRNNFYGIQRYLQIHLSAVGEHSLPDAYEKRLEQPRDTVIKQMKNSRLTALCMMNLRPLAGLQNIDEMLKPKGKVPWGNRVGFLCLLVPMMGKLENPLEFLKRTKRVIDRNKISLATYINYRLGKWLARKKGPRALSKCLYDTVVHTTMVVSNMIGPMEKIAMAGNPVNNFTFFVSGLPQALGVFIVSYMGSVVLQVHAHKDYVDAHMLCKCFVEAMKEMKNYTLNPNPIEDGNSESI*

Protein Length: 285

Fln nts: TTCTCTGTGTGTACACGTCATCTTTGAATTACAGGAGTCTGTTATCGACATCCCTAAGTACATGAATGCTGTTGCTGAGTCGATCATGTCGACGAACCCTCTGTACTCATGCATAATGACAGTAAATGATGTGATAACAGGAATAATTTCTACGGCATTCAACGCTACTTGCAGATTCACCTATCAGCAGTTGGAGAACATAGTTTACCAGATGCTTATGAAAAGAGACTGGAGCAACCCAGGGACACTGTAATCAAACAAATGAAGAATTCAAGACTCACTGCACTATGTATGATGAATTTGAGACCATTGGCTGGATTACAGAATATAGATGAGATGTTGAAACCAAAAGGTAAAGTACCGTGGGGGAATCGCGTTGGTTTTTTATGTTTGCTGGTACCTATGATGGGAAAGCTGGAGAATCCTCTGGAGTTTTTGAAAAGGACAAAGCGGGTCATTGACCGAAATAAAATTTCTCTGGCAACATATATCAATTATAGACTCGGTAAATGGCTAGCAAGGAAGAAAGGACCACGGGCGCTTTCTAAATGTCTATACGACACTGTTGTCCATACAACGATGGTGGTGTCAAATATGATTGGTCCAATGGAGAAGATAGCAATGGCCGGAAATCCAGTTAACAACTTTACCTTCTTCGTATCAGGTTTACCTCAAGCACTCGGAGTTTTCATTGTGAGTTATATGGGATCTGTCGTGCTGCAAGTTCATGCACACAAGGATTATGTCGATGCACATATGTTGTGCAAGTGCTTTGTGGAAGCCATGAAGGAAATGAAAAATTATACTCTAAACCCAAACCCCATTGAAGATGGGAATAGTGAATCCATCTGA___AACATATTTCAGTTTGAGTTCTGCATGTCCAGAGCTCACAATGCAGGGATAAGGATAATCCACCTTGTATCAAGAATATGTAATAGAGGGATAAGGATAATCCACCTTGTATCGAGAATACGTGTTTGGATGATTATAGAAGATAGTTATAACTTCCAGATGCTGTAAGTATTTAAATAATGAACTGCCTATATTGTCTTTTTTGAAATGGCAGTTCAAGATTTATGAGTTGTGTATGGTGTGTTTTTAAATTAAATTAAATTCAGTCACCTGAACTT

Fln Alignment:

sp_v1.1_unigene3107___FYGIQRYLQIHLSAVGEHSLPDAYEKRLEQPRDTVIKQMKNSRLTALCMMNLRPLAGLQNIDEMLKPKGKVPWGNRVGFLCLLVPMMGKLENPLEFLKRTKRVIDRNKISLATYINYRLGKWLARKKGPRALSKCLYDTVVHTTMVVSNMIGPMEKIAMAGNPVNNFTFFVSGLPQALGVFIVSYMGSVVLQVHAHKDYVDAHMLCKCFVEAMKEMKNYT
D5AE65______________FYGMQRYLQIRFSAITEHGLQDAYEKRFEMPEDAVIKQMEKSKLTALCLINMRGLAGLQSIDEMVKPKAQAPWGNHFGFLPVRVPMLGKLENPIQFVRRTKSKIDRHKISLGTSINGKIMAYLGWLKGPQAVSRYLYNTLANSTFGMSNLIGPTEKVAIDGNPIKSFSFFVSGAPQSLELSIVSYTGVVVVQVYAQKAYVDANMLCKCFIEACEEIKKAT

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
363		66		33	0.997452
587	80		20		0.999996
605		10		90	0.90298
606	10			90	0.90298
651		11	88		0.923564
652	11	88			0.923564
655			87	12	0.992554
800	50	50			1.0
814	75		25		0.996473
833	50			50	1.0
835		25		75	0.996473
836		25		75	0.996473
848			33	66	0.997452
852	66			33	0.997452
892		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
16	32	AATTT AATTT AATTT AA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain