SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3085

Length: 1489 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3085

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	umc1949; LOC100191300; K05309 prostaglandin-E synthase [EC:5.3.99.3]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
AutoFact	Prostaglandin-E synthase.	EC:5.3.99.3	-	0.0	72%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Arachidonic acid metabolism	00590		0.0	72%
AutoFact	Metabolic pathways	01100		0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	84%

Source	InterPros	Term	Type	Identity
Blast2go	Glutaredoxin	IPR002109	-	84%
Blast2go	Glutathione S-transferase, C-terminal-like	IPR010987	-	84%
Blast2go	Glutaredoxin active site	IPR011767	-	84%
Blast2go	Thioredoxin fold	IPR012335	-	84%
Blast2go	Thioredoxin-like fold	IPR012336	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0L0

Fln msg:

Fln protein: MRVQGLGSVLRKTTIRSGILASRVQNGLTDSSLSSSPWKFRMLSSLPATNLHNGGKRDDDKWAGRGPLVAAGAISFSFAASSFTTVVAKERPSSEFIPKDLVLYQYEACPFCNKVKAYLDYHHLPYKIVEVNPISKKEIKWSDYKKVPILMVDGKQLNDSSAIINQLDSQIHPNKGRLPTDAEEEEKWRRWVDEHLVHVLSPNIYRSVSEALESFDYITTQGNFTTLERLTGKYVGAAAMYFVSKKLKKKHNITDERASLYEAANTWVEALNNRLFMGGSKPNLADLAVFGVLRPIRYLQSGRDMVANTNIGAWYSRMEEAVGETSGVKD*

Protein Length: 332

Fln nts: ATGGGAAAAGTAAAAACAGCAAACCTTGCATATAAACGTCGTAGACCTTGCGCTGTCACTCAATTTTTGCCCAAATAATCTTTGGGGACA_-_ATGAGGGTTCAGGGTTTAGGATCTGTTCTCAGAAAAACCACCATTCGGTCTGGCATACTCGCCTCGCGAGTACAGAATGGACTGACAGATTCATCCCTTTCATCGTCTCCATGGAAATTTCGAATGCTCTCCTCGCTACCTGCGACAAATTTGCACAATGGTGGGAAAAGAGATGACGATAAATGGGCTGGGAGGGGCCCTCTCGTGGCTGCAGGGGCGATCTCCTTCTCGTTTGCAGCTTCCTCTTTCACTACTGTGGTTGCCAAGGAGCGTCCATCCAGTGAATTCATACCCAAGGATCTCGTGCTTTACCAGTACGAGGCGTGTCCCTTCTGCAATAAGGTCAAAGCATATCTAGATTACCATCATTTACCATACAAAATTGTCGAGGTTAATCCCATCAGTAAGAAGGAAATTAAATGGTCTGATTACAAGAAGGTGCCAATATTGATGGTGGATGGAAAGCAACTAAATGATTCATCAGCAATAATTAACCAGTTGGATAGTCAAATCCATCCTAACAAAGGAAGATTGCCAACAGATGCAGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAACACCTGGTACATGTATTGTCACCCAATATCTACCGGAGTGTTTCAGAGGCCCTTGAGTCCTTCGATTATATTACTACGCAAGGTAACTTCACAACTCTGGAGAGATTGACTGGAAAATATGTAGGAGCTGCAGCTATGTATTTTGTCTCAAAAAAACTTAAAAAGAAACATAATATCACAGATGAGCGTGCCTCACTATATGAAGCTGCAAATACTTGGGTGGAAGCTCTTAATAATAGGTTGTTTATGGGTGGTTCTAAACCCAATTTGGCAGATCTAGCTGTCTTTGGAGTATTAAGGCCCATTCGTTATTTGCAATCTGGAAGGGATATGGTAGCAAACACAAACATTGGTGCATGGTACTCAAGAATGGAAGAGGCAGTGGGTGAAACTTCAGGAGTGAAGGATTAA___ATATGTTTTCCTATTTGAGTAGCAGCCAGCATTGAACGACGACACCACCATTTATCCCATTATTAGACTATCAATGATAATTTAGTCAGTCTAAAATCGTGAATGCTTGTATTGTTCATTGTTGTTAAGCCTCAACATTCGTCCAGTTTTGGCTTAGAGAATAGGCAATAAGTAGGTTGATTATTCAGAGATGGCATGTGTTCTTTTAAGTTGTATCATTTTTGGTGGGAACAATGAAGATGGAAGGTATTCTTTGGTTGGTAGCCCTTTGCCTAGTTGTTCCTAGGGTTTTGTTCGTTATGGCTACCTTTGTTTCTGGTGGTTGTAATCTTACAAGTTCTTTTGTAACTCGACGCATTTTAAATAAAATTAGGATTGTAATTTACAACCCTAACTCATGCTTTTC

Fln Alignment:

sp_v1.1_unigene3085___MRVQGLGSVLRKTTIRSGILASRVQNGLTDSSLSSSPWKFRMLSSLPATNLHNGGKRDDDKWAGRGPLXXXXXXXXXXXXXXXXXXXXKERPSSEFIPKDLVLYQYEACPFCNKVKAYLDYHHLPYKIVEVNPISKKEIKWSDYKKVPILMVDGKQLNDSSAIINQLDSQIHPNKGRLPTDAEEEEKWRRWVDEHLVHVLSPNIYRSVSEALESFDYITTQGNFTTLERLTGKYVGAAAMYFVSKKLKKKHNITDERASLYEAANTWVEALNNRLFMGGSKPNLADLAVFGVLRPIRYLQSGRDMVANTNIGAWYSRMEEAVGETSGVKD
A9P0L0______________MRVQGLGSVLRKTTSRSGIFASRVQNGLADSSLSSSPWKYRMLSSLPSTSFNDGGKRDDEKWARKGPFMAAGAISFSFAASSFTTAVAKERPSSEFIPKDLVLYQYEACPFCNKVKAFLDYHDLTYKIVEVNPLGKKEIKWSDYKKVPILMVDGKQLNDSSAIIDKLDSQIHPNKGRLPTDAEEEEKWRRWVDEHLVHILSPNIYRSASEALESFDYITTHGNFSTLERLTGKYVGAAAMYFVSKKLKKKHNITDERASLYEAANAWVEALNNRLFMGGSKPNLADLAVFGVLRPIRYLQSGRDMVANTNIGAWYSRMEDAVGGTSGIKD

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
627		88		11	0.923564
637	88		11		0.923564
718	80	20			0.999996
889	16			83	0.994512
891		16	83		0.994512
892	16		83		0.994512
893		16	83		0.994512
895		16	83		0.994512
896	16		83		0.994512
1282	30			69	1.0
1439		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain