SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3084

Length: 2288 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3084
CGTCGTGACCTTGGCTGTCACGAATCTGGTGGGAGAAACTTGAATTTCAAGGTAATTGTCCCCGTTTTATCTCTAGTCCCTGCAAGTGATTGTTCCTATTGTATTCATATTTCAAGACTCCTGCGTTGTCCTGAACTTTGCATCTCACACTGTTCTTTTGTTGGTTTCCTGTTTGGCAATGGCAGTTGTGTTCATTGTTGGGACCTTCAGATCTAAGCTAATTCCCATTAAGCAGAGCTTAATCGTCAAATAGGTTTACAACTTTGCGAAAGTCTCCGAAAATTCTCAAGTGGGTCTAACTTTTAAGTATCTTGGAATTTTCATAAAAATTCTAAAGGTGGTCCAAGTACTTTGGCAATTTTTGGAGAAATTATCATTTGGCTACAAGTATTTTGAAAGCTTCTGCCAGAAAATTTCATCAACTGGTTTGAAGATCTTTGTATTGGCAGCTTTCAATGGCGGCTTTCAAGCAACCAGGAAGTGGTGGGTTTATAGCAGCAGCAGCAGTCTTTGTATGTTTGCTTGTAATTCACATGAGTCTAAGGCCTCCCGCCCAGCAGCATGAGTACCTTGGGACTTTTCCTCCTATAGACAGGACTGTAATATCCAGAAGAGGCAGTCCACGAAAGAGTATATGGAACGTGCAGAGCCTTGTGCACTGGAAGCCTTGCGAATGGTGGACTGCAAAACCCATAACAGGTCCTCCCGTGGAAAGCAATGGATACATCAAAGTTGATTGCCATGGAGGTCTTAATCAGATGCGACGAGATCTATGCGATGGTGTAGATGTTGCTCGTCTACTCAATGCGACATTAGTCCTGCCAAACTTTGAAGCGGCTTCATATTGGAATGATACAAGTGGTTTTGCAGATATTTTCGATGTAGACTATTTCATTCAGCAGATGAAAGGATTTGTCCATGTTGTGAAAGAATTACCACAAGGACTGGCCTCAAAAAAACCAGTTAGAGTTGATTGTCGTAAAAAGAAAGGTCATTTTGATTATATCGAGTCTGTACTTCCTTCTTTGGTGAAGCATCAATATATCATCATTACCCCTGCAGCGAGTCAAAAGATAGATAGACACCCATTTTATGCCAAAGCAGCACGCTGTTATGCATGTTTCAGAGCTCTACGCCTTGTTAGGCATCTTGAGCTAAAGGGAGCTGAACTGCTACAAAGGATCCCTCAACCATTTTTATCTTTGCATATGAGATTTGAACCTGACATGATAGCTTACAGTAGATGTGAGTATACTGGCCTTGATCGGAGCTCTTTGGATGCAATTAATGAAGCTAGAAATGGTAGGATAAGCTTCTCAGGGGATGCTGGAATGGCGTGGAGGAAGAGAGGAAAGTGCCCTCTAACTCCGAGAGAGACAGCCTTTATTTTTCAGGCCCTTGGAATCCCCACTAACACAACGATTTATTTGGCTGCTGGTGAAAGCCTCTTGGAGTGGAAGGATTTCACTTCTGTGTACAGGAACAGTTACACCAAATCTTCTCTTCTAGACAAGGCAAGCTTGATGGGATTGCCTGGCAATAGCAGAGCTGCATTGGACTACTATATATCCATCAATAGTGAGGCATACATTGGGACATATTTTGGGAACATGGACAAGATGGTAGCTGCAATGAGAGCTTTGAGTGGGCGACCAAACACAATTTTTCTCAACAGGAGAGCTTTTGCAGAAGCTGTTTCTCAAGGTCTCAATGGAGAGAGGCTGGCAGATTATTTGTGGGACGCTCACAGGGATGCTTTAGTTGATGGAAGAGGATCTGCTCTGCCTGATTGCTTTTGTGTGTCCAACATTACAGATTCACATTAATTGTGATGATAATTTAGTTATATGCTATCTCCATATTTCATGCTTTCAGAAACCTGATTTCATCTTTGGAGTGGATCTTCAGCATGGGATATTTCTGTTCTTTTTAAAAGGGTTGTTGCCATTTTTTTACGTTGGTTTTGTTAGTTGCAGAGGGGAAGGGAACCGCAGCTTATAAAAATTATGTTGCTTCTGATAATAATCTGAAGTTACATGAGAACCTGATCTTTTGAGGTTTTGCAGCAAAGGAATATAATTTTCTTTTGGCTACCACTTTATAATTTATGTTTTGTAATGGTCTATAACTTTGTGGTTTAAGTGCTATAAAACTTTGTGATGTAGCGTTCATTGCAGTACACACGGATGGTAACTGCGATATTAGAAATCGGCTGCTTTCATGTCTAGGATGAATGGAGGATGGACACCAATAATACTTCCACACTTAATAATATTTGTTAGTTGTCA

Ace file of the UniGene sp_v1.1_unigene3084

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	O-FucT domain containing protein	-	-	38%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	63%
Blast2go	protein	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GDP-fucose protein O-fucosyltransferase	IPR019378	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9GWC6

Fln msg:

Fln protein: MAAFKQPGSGGFIAAAAVFVCLLVIHMSLRPPAQQHEYLGTFPPIDRTVISRRGSPRKSIWNVQSLVHWKPCEWWTAKPITGPPVESNGYIKVDCHGGLNQMRRDLCDGVDVARLLNATLVLPNFEAASYWNDTSGFADIFDVDYFIQQMKGFVHVVKELPQGLASKKPVRVDCRKKKGHFDYIESVLPSLVKHQYIIITPAASQKIDRHPFYAKAARCYACFRALRLVRHLELKGAELLQRIPQPFLSLHMRFEPDMIAYSRCEYTGLDRSSLDAINEARNGRISFSGDAGMAWRKRGKCPLTPRETAFIFQALGIPTNTTIYLAAGESLLEWKDFTSVYRNSYTKSSLLDKASLMGLPGNSRAALDYYISINSEAYIGTYFGNMDKMVAAMRALSGRPNTIFLNRRAFAEAVSQGLNGERLADYLWDAHRDALVDGRGSALPDCFCVSNITDSH*

Protein Length: 458

Fln nts: CGTCGTGACCTTGGCTGTCACGAATCTGGTGGGAGAAACTTGAATTTCAAGGTAATTGTCCCCGTTTTATCTCTAGTCCCTGCAAGTGATTGTTCCTATTGTATTCATATTTCAAGACTCCTGCGTTGTCCTGAACTTTGCATCTCACACTGTTCTTTTGTTGGTTTCCTGTTTGGCAATGGCAGTTGTGTTCATTGTTGGGACCTTCAGATCTAAGCTAATTCCCATTAAGCAGAGCTTAATCGTCAAATAGGTTTACAACTTTGCGAAAGTCTCCGAAAATTCTCAAGTGGGTCTAACTTTTAAGTATCTTGGAATTTTCATAAAAATTCTAAAGGTGGTCCAAGTACTTTGGCAATTTTTGGAGAAATTATCATTTGGCTACAAGTATTTTGAAAGCTTCTGCCAGAAAATTTCATCAACTGGTTTGAAGATCTTTGTATTGGCAGCTTTCA_-_ATGGCGGCTTTCAAGCAACCAGGAAGTGGTGGGTTTATAGCAGCAGCAGCAGTCTTTGTATGTTTGCTTGTAATTCACATGAGTCTAAGGCCTCCCGCCCAGCAGCATGAGTACCTTGGGACTTTTCCTCCTATAGACAGGACTGTAATATCCAGAAGAGGCAGTCCACGAAAGAGTATATGGAACGTGCAGAGCCTTGTGCACTGGAAGCCTTGCGAATGGTGGACTGCAAAACCCATAACAGGTCCTCCCGTGGAAAGCAATGGATACATCAAAGTTGATTGCCATGGAGGTCTTAATCAGATGCGACGAGATCTATGCGATGGTGTAGATGTTGCTCGTCTACTCAATGCGACATTAGTCCTGCCAAACTTTGAAGCGGCTTCATATTGGAATGATACAAGTGGTTTTGCAGATATTTTCGATGTAGACTATTTCATTCAGCAGATGAAAGGATTTGTCCATGTTGTGAAAGAATTACCACAAGGACTGGCCTCAAAAAAACCAGTTAGAGTTGATTGTCGTAAAAAGAAAGGTCATTTTGATTATATCGAGTCTGTACTTCCTTCTTTGGTGAAGCATCAATATATCATCATTACCCCTGCAGCGAGTCAAAAGATAGATAGACACCCATTTTATGCCAAAGCAGCACGCTGTTATGCATGTTTCAGAGCTCTACGCCTTGTTAGGCATCTTGAGCTAAAGGGAGCTGAACTGCTACAAAGGATCCCTCAACCATTTTTATCTTTGCATATGAGATTTGAACCTGACATGATAGCTTACAGTAGATGTGAGTATACTGGCCTTGATCGGAGCTCTTTGGATGCAATTAATGAAGCTAGAAATGGTAGGATAAGCTTCTCAGGGGATGCTGGAATGGCGTGGAGGAAGAGAGGAAAGTGCCCTCTAACTCCGAGAGAGACAGCCTTTATTTTTCAGGCCCTTGGAATCCCCACTAACACAACGATTTATTTGGCTGCTGGTGAAAGCCTCTTGGAGTGGAAGGATTTCACTTCTGTGTACAGGAACAGTTACACCAAATCTTCTCTTCTAGACAAGGCAAGCTTGATGGGATTGCCTGGCAATAGCAGAGCTGCATTGGACTACTATATATCCATCAATAGTGAGGCATACATTGGGACATATTTTGGGAACATGGACAAGATGGTAGCTGCAATGAGAGCTTTGAGTGGGCGACCAAACACAATTTTTCTCAACAGGAGAGCTTTTGCAGAAGCTGTTTCTCAAGGTCTCAATGGAGAGAGGCTGGCAGATTATTTGTGGGACGCTCACAGGGATGCTTTAGTTGATGGAAGAGGATCTGCTCTGCCTGATTGCTTTTGTGTGTCCAACATTACAGATTCACATTAA___TTGTGATGATAATTTAGTTATATGCTATCTCCATATTTCATGCTTTCAGAAACCTGATTTCATCTTTGGAGTGGATCTTCAGCATGGGATATTTCTGTTCTTTTTAAAAGGGTTGTTGCCATTTTTTTACGTTGGTTTTGTTAGTTGCAGAGGGGAAGGGAACCGCAGCTTATAAAAATTATGTTGCTTCTGATAATAATCTGAAGTTACATGAGAACCTGATCTTTTGAGGTTTTGCAGCAAAGGAATATAATTTTCTTTTGGCTACCACTTTATAATTTATGTTTTGTAATGGTCTATAACTTTGTGGTTTAAGTGCTATAAAACTTTGTGATGTAGCGTTCATTGCAGTACACACGGATGGTAACTGCGATATTAGAAATCGGCTGCTTTCATGTCTAGGATGAATGGAGGATGGACACCAATAATACTTCCACACTTAATAATATTTGTTAGTTGTCA

Fln Alignment:

sp_v1.1_unigene3084___TVISRRGSPRKSIWNVQSLVHWKPCEWWTAKPITGPPVESNGYIKVDCHGGLNQMRRDLCDGVDVARLLNATLVLPNFEAASYWNDTSGFADIFDVDYFIQQMKGFVHVVKELPQGLASKKPVRVDCRKKKGHFDYIESVLPSLVKHQYIIITPAASQKIDRHPFYAKAARCYACFRALRLVRHLELKGAELLQRIPQPFLSLHMRFEPDMIAYSRCEYTGLDRSSLDAINEARNGRISFSGDAGMAWRKRGKCPLTPRETAFIFQALGIPTNTTIYLAAGESLLEWKDFTSVYRNSYTKSSLLDKASLMGLPGNSRAALDYYISINSEAYIGTYFGNMDKMVAAMRALSGRPNTIFLNRRAFAEAVSQGLNGERLADYLWDAHRDALVDGRGSALPDCFC
B9GWC6______________SVPSNKQAGKSDIWGVKRLVEWRPCKWWIHGPRIALPAESNGYIRVDCYGGLNQMRRDFCDGVGIARLLNATLVLPKFEAAAYWNESSGFADVFDVDYFIQQMDGFIKVVKELPPEVALKEPFRVDCSKRKGQFDYIESVLPSLLKYQYISITPAMSQRRDRYPLYAKAALCQACYGSLRLTRTLEQKAAELLEAIPKPFLSLHLRFEPDMVAYSQCEYPGLSPASKEAIEAARGDRKPWTGELARTWRKRGKCPLTPNETAFIFQALSIPTNTNIYLAAGDGLMEIEGLKSIYTNVVTKSALLSGEDFLNMHGNTKAALDYFVSINSDFYVATFFGNMDKMVAAMRAYKGLHNTLFLSRRAYAELTSKGLDGKELMQALWLAHKEDYAMGRGSALPDCFC

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
247	14		85		0.993533
249		85	14		0.993533
250	85		14		0.993533
251	85		14		0.993533
473		85		14	0.993533
898	12			87	0.992554
899		87		12	0.992554
900	87		12		0.992554
902		87	12		0.992554
910	85		14		0.993533
1672		93	6		0.999153
1744		92	2	5	0.992495
2103	75			25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
494	507	AGC AGC AGC AGC AG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain