SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3076

Length: 2710 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3076
AAACAATAAGGACGCAAAAAATTCAATGGACACGAGCAAGTATGTTCGTTATACGTCTGAGCAGGTCGAAGCGCTGGAGCGTGTTTACAGCGAGTGTCCGAAGCCGAGCTCGCTTCGGCGGCAGCAGCTTATTAGAGAGTGCCCTATACTTTCCAATATTGAGCCCAAGCAAATCAAAGTTTGGTTTCAGAATCGAAGGTGCCGAGAGAAGCAGAGGAAGGAAGCCTCGAGACTTCAGACTGTTAACAGGAAGCTGACGGCAATGAACAAGTTGCTCATGGAGGAGAACGATCGCCTTCAGAAGCAAGTTTCACAGTTGGTGTACGAGAATGGTTACATGAGACAGCAGCTGCAGAATGCATCTGTGGCTGCCACAGACACAAGCTGTGAGTCTGTGGTGACTAGTGGTCAGCACCAACATAATCCAACACCTCAGCATCCCCCAAGAGATGCTAGCCCCGCTGGACTCCTGTCTATAGCAGAGGAGACCTTGACAGAGTTCCTTTCAAAGGCTAAAGGAGCTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGATTGGTATTGTAGCTATTTCGAATACTTGTAATGGAGTAGCTGCACGTGCTTGCGGTCTTGTAGGATTAGATCCTACAAAGGTTGCAGAGATTCTTAAAGATCGCCCATCTTGGCTTCGTGATTGTCGTTGCCTTGATGTTTTGACTGCGTTTCCTACTGGAAATGGTGGAACAATCGAGCTTTTATACATGCAGACATATGCCGCCACTACTTTAGCTTCTGCTAGAGACTTCTGGACTCTGAGATACACAACAGTGTTGGAAGATGGCAGTCTTGTGGTTTGTGAAAGGTCCTTGAGTGGTACTCAGGGTGGTCCAAGCATACCGCCAGTGCAGCATTTTGTGAGAGCAGAAATGCTTCCCAGTGGATATTTGATACAACCTTGTGAAGGTGGTGGTTCCATAATCCGTATTGTTGATCACATGGATCTAGAGCCATGGAGTGTGCCTGAGGTTTTACGACCACTATATGAATCGTCCACTGTACTTGCCCAGAAAATGACAATTGCAGCATTGCGTCGATTACGCCAAATTGCACAGGAAGCCACAGGTGAAGTAGTTTTTGGTTGGGGAAGACAGCCAGCTGTTCTGCGAACATTTAGCCAGAGGTTAAGCAGGGGTTTCAACGAGGCCGTGAATGGATTTACAGATGATGGGTGGTCATTGATGGGTAGTGATGGAGTGGAGGATGTCACTATTGCTATCAATTCATCTCCAAACAAACATTTTGCCTACCAAGTTAATGCTTCTAATGGGCTAACAACTCTTGGTGGTGGCATCCTTTGTGCAAAGGCATCCATGCTCTTACAGAATGTGCCTCCAGCATTACTTGTACGTTTCTTGCGCGAGCACCGATCAGAGTGGGCAGATTCCAACATTGATGCCTATTCTGCAGCTGCTTTAAAATCAAGTCCTTATAGTGTTCCAGGATCAAGAGCAGGGGGCTTTTCAGGGAGTCAAGTAATCCTTCCCTTGGCACATACTGTGGAACATGAGGAGTTCTTAGAGGTCATTAAGCTGGAAGGTCATGGCCTTACACAGGAGGAAGCTGTCCTGTCCAGAGATATGTTTCTCTTACAGCTTTGCAGTGGAATTGATGAACATGCAGCTGGAGCATGTGCTGAACTTGTTTTTGCACCAATTGATGAATCCTTTGCTGATGATGCTCCTTTGCTTCCTTCTGGGTTCAGGGTTATTCCTTTGGAATCAAGAACAGATGGATCTGGGGGTCCCAACCGGACATTGGACTTGGCTTCTGCTCTTGAGGTTGGATCAACTGGAACTAGAACGTCTGGTGATTCTGGCACCAACTCGAATCTGAGATCTGTGTTGACTATTGCATTCCAGTTTACTTATGAGAGCCACTCGCGAGAAAATGTGGCAGCTATGGCTCGTCAATATGTGCGTAGTGTTGTAGCATCTGTCCAGAGGGTTGCCATGGCATTAGCTCCTTCTCGACTGAATTCACATGTTGGCCCAAGGCCACCTCCTGGGACTCCAGAAGCACTTACTCTTGCCCGTTGGATTTGTCAGAGCTACAGACTCCACATAGGTGTGGACCTGTTTCGAGCTGATTGTGAAGCCAGTGAGTCTGTACTGAAACTACTTTGGCACCATTCAGATGCAATCATGTGCTGTTCTGTGAAGGCGTTGCCTGTTTTTACATTTGCAAATCAAGCAGGGTTGGACATGCTGGAAACGACATTGGTTGCATTGCAAGATATATCTTTGGACAAAATTCTGGATGAAAATGGTCGCAAAAGTTTTTTCACAGATTATGGTCAAATTATTCAACAGGGTTATGCTTATCTACCTGCTGGGATATGTCTCTCAAGTATGGGCAGGCCTGCTTCATATGACCGGGCAATAGCTTGGAAGGTTCTGAATGACGAAGACAGTACCCACTGCATCGTTTTCATGTTTATGAATTGGTCCTTTATGTGACCATTCTGTTCACGCAGAAGAGTATGTGAATACTCATTTTTGTGGAAATTAAGTAGTCGGCTAAATTATCACATATTTTATTAAGCTTGTTTGGCTAATACTCTCAGAACTCATATACCTATTAGACAATTTGGATGGATTTTGTAAGCAGCACTTTCTTGTTGCATTTTGTTATATTTAAAGATTCTCAGTGAG

Ace file of the UniGene sp_v1.1_unigene3076

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Class III HD-Zip protein HDZ31 n=13 Tax=Spermatophyta RepID=Q0Q421_PINTA	-	-	94%
FL-Next	tr=Class III HD-Zip protein HDZ31; Pinus taeda (Loblolly pine).	-	-	99%
Blast2go	homeodomain-leucine zipper trancription factor hb-3	-	-	94%

Source	InterPros	Term	Type	Identity
Blast2go	Homeodomain	IPR001356	-	94%
Blast2go	Lipid-binding START	IPR002913	-	94%
Blast2go	Homeodomain-like	IPR009057	-	94%
Blast2go	Homeodomain-related	IPR012287	-	94%
Blast2go	MEKHLA	IPR013978	-	94%
Blast2go	START-like domain	IPR023393	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q0Q421

Fln msg: atg_distance in limit (1-15): atg_distance = 6,

Fln protein: MDTSKYVRYTSEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYMRQQLQNASVAATDTSCESVVTSGQHQHNPTPQHPPRDASPAGLLSIAEETLTEFLSKAKGAAVDWVQMPGMKPGPDSIGIVAISNTCNGVAARACGLVGLDPTKVAEILKDRPSWLRDCRCLDVLTAFPTGNGGTIELLYMQTYAATTLASARDFWTLRYTTVLEDGSLVVCERSLSGTQGGPSIPPVQHFVRAEMLPSGYLIQPCEGGGSIIRIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTIAALRRLRQIAQEATGEVVFGWGRQPAVLRTFSQRLSRGFNEAVNGFTDDGWSLMGSDGVEDVTIAINSSPNKHFAYQVNASNGLTTLGGGILCAKASMLLQNVPPALLVRFLREHRSEWADSNIDAYSAAALKSSPYSVPGSRAGGFSGSQVILPLAHTVEHEEFLEVIKLEGHGLTQEEAVLSRDMFLLQLCSGIDEHAAGACAELVFAPIDESFADDAPLLPSGFRVIPLESRTDGSGGPNRTLDLASALEVGSTGTRTSGDSGTNSNLRSVLTIAFQFTYESHSRENVAAMARQYVRSVVASVQRVAMALAPSRLNSHVGPRPPPGTPEALTLARWICQSYRLHIGVDLFRADCEASESVLKLLWHHSDAIMCCSVKALPVFTFANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGRPASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM*

Protein Length: 831

Fln nts: AAACAATAAGGACGCAAAAAATTCA_-_ATGGACACGAGCAAGTATGTTCGTTATACGTCTGAGCAGGTCGAAGCGCTGGAGCGTGTTTACAGCGAGTGTCCGAAGCCGAGCTCGCTTCGGCGGCAGCAGCTTATTAGAGAGTGCCCTATACTTTCCAATATTGAGCCCAAGCAAATCAAAGTTTGGTTTCAGAATCGAAGGTGCCGAGAGAAGCAGAGGAAGGAAGCCTCGAGACTTCAGACTGTTAACAGGAAGCTGACGGCAATGAACAAGTTGCTCATGGAGGAGAACGATCGCCTTCAGAAGCAAGTTTCACAGTTGGTGTACGAGAATGGTTACATGAGACAGCAGCTGCAGAATGCATCTGTGGCTGCCACAGACACAAGCTGTGAGTCTGTGGTGACTAGTGGTCAGCACCAACATAATCCAACACCTCAGCATCCCCCAAGAGATGCTAGCCCCGCTGGACTCCTGTCTATAGCAGAGGAGACCTTGACAGAGTTCCTTTCAAAGGCTAAAGGAGCTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGATTGGTATTGTAGCTATTTCGAATACTTGTAATGGAGTAGCTGCACGTGCTTGCGGTCTTGTAGGATTAGATCCTACAAAGGTTGCAGAGATTCTTAAAGATCGCCCATCTTGGCTTCGTGATTGTCGTTGCCTTGATGTTTTGACTGCGTTTCCTACTGGAAATGGTGGAACAATCGAGCTTTTATACATGCAGACATATGCCGCCACTACTTTAGCTTCTGCTAGAGACTTCTGGACTCTGAGATACACAACAGTGTTGGAAGATGGCAGTCTTGTGGTTTGTGAAAGGTCCTTGAGTGGTACTCAGGGTGGTCCAAGCATACCGCCAGTGCAGCATTTTGTGAGAGCAGAAATGCTTCCCAGTGGATATTTGATACAACCTTGTGAAGGTGGTGGTTCCATAATCCGTATTGTTGATCACATGGATCTAGAGCCATGGAGTGTGCCTGAGGTTTTACGACCACTATATGAATCGTCCACTGTACTTGCCCAGAAAATGACAATTGCAGCATTGCGTCGATTACGCCAAATTGCACAGGAAGCCACAGGTGAAGTAGTTTTTGGTTGGGGAAGACAGCCAGCTGTTCTGCGAACATTTAGCCAGAGGTTAAGCAGGGGTTTCAACGAGGCCGTGAATGGATTTACAGATGATGGGTGGTCATTGATGGGTAGTGATGGAGTGGAGGATGTCACTATTGCTATCAATTCATCTCCAAACAAACATTTTGCCTACCAAGTTAATGCTTCTAATGGGCTAACAACTCTTGGTGGTGGCATCCTTTGTGCAAAGGCATCCATGCTCTTACAGAATGTGCCTCCAGCATTACTTGTACGTTTCTTGCGCGAGCACCGATCAGAGTGGGCAGATTCCAACATTGATGCCTATTCTGCAGCTGCTTTAAAATCAAGTCCTTATAGTGTTCCAGGATCAAGAGCAGGGGGCTTTTCAGGGAGTCAAGTAATCCTTCCCTTGGCACATACTGTGGAACATGAGGAGTTCTTAGAGGTCATTAAGCTGGAAGGTCATGGCCTTACACAGGAGGAAGCTGTCCTGTCCAGAGATATGTTTCTCTTACAGCTTTGCAGTGGAATTGATGAACATGCAGCTGGAGCATGTGCTGAACTTGTTTTTGCACCAATTGATGAATCCTTTGCTGATGATGCTCCTTTGCTTCCTTCTGGGTTCAGGGTTATTCCTTTGGAATCAAGAACAGATGGATCTGGGGGTCCCAACCGGACATTGGACTTGGCTTCTGCTCTTGAGGTTGGATCAACTGGAACTAGAACGTCTGGTGATTCTGGCACCAACTCGAATCTGAGATCTGTGTTGACTATTGCATTCCAGTTTACTTATGAGAGCCACTCGCGAGAAAATGTGGCAGCTATGGCTCGTCAATATGTGCGTAGTGTTGTAGCATCTGTCCAGAGGGTTGCCATGGCATTAGCTCCTTCTCGACTGAATTCACATGTTGGCCCAAGGCCACCTCCTGGGACTCCAGAAGCACTTACTCTTGCCCGTTGGATTTGTCAGAGCTACAGACTCCACATAGGTGTGGACCTGTTTCGAGCTGATTGTGAAGCCAGTGAGTCTGTACTGAAACTACTTTGGCACCATTCAGATGCAATCATGTGCTGTTCTGTGAAGGCGTTGCCTGTTTTTACATTTGCAAATCAAGCAGGGTTGGACATGCTGGAAACGACATTGGTTGCATTGCAAGATATATCTTTGGACAAAATTCTGGATGAAAATGGTCGCAAAAGTTTTTTCACAGATTATGGTCAAATTATTCAACAGGGTTATGCTTATCTACCTGCTGGGATATGTCTCTCAAGTATGGGCAGGCCTGCTTCATATGACCGGGCAATAGCTTGGAAGGTTCTGAATGACGAAGACAGTACCCACTGCATCGTTTTCATGTTTATGAATTGGTCCTTTATGTGA___CCATTCTGTTCACGCAGAAGAGTATGTGAATACTCATTTTTGTGGAAATTAAGTAGTCGGCTAAATTATCACATATTTTATTAAGCTTGTTTGGCTAATACTCTCAGAACTCATATACCTATTAGACAATTTGGATGGATTTTGTAAGCAGCACTTTCTTGTTGCATTTTGTTATATTTAAAGATTCTCAGTGAG

Fln Alignment:

sp_v1.1_unigene3076___NNKDAKNSMDTSKYVRYTSEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYMRQQLQNASVAATDTSCESVVTSGXXXXXXXXXXXXRDASPAGLLSIAEETLTEFLSKAKGAAVDWVQMPGMKPGPDSIGIVAISNTCNGVAARACGLVGLDPTKVAEILKDRPSWLRDCRCLDVLTAFPTGNGGTIELLYMQTYAATTLASARDFWTLRYTTVLEDGSLVVCERSLSGTQGGPSIPPVQHFVRAEMLPSGYLIQPCEGGGSIIRIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTIAALRRLRQIAQEATGEVVFGWGRQPAVLRTFSQRLSRGFNEAVNGFTDDGWSLMGSDGVEDVTIAINSSPNKHFAYQVNASNGLTTLGGGILCAKASMLLQNVPPALLVRFLREHRSEWADSNIDAYSAAALKSSPYSVPGSRAGGFSGSQVILPLAHTVEHEEFLEVIKLEGHGLTQEEAVLSRDMFLLQLCSGIDEHAAGACAELVFAPIDESFADDAPLLPSGFRVIPLESRTDGSGGPNRTLDLASALEVXXXXXXXXXXXXXXXNLRSVLTIAFQFTYESHSRENVAAMXXXXXXXXXXXXXXXXMALAPSRLNSHVGPRPPPGTPEALTLARWICQSYRLHIGVDLFRADCEASESVLKLLWHHSDAIMCCSVKALPVFTFANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGRPASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM
Q0Q421______________NNKDAKNSMDTSKYVRYTSEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYMRQQLQNASVAATDTSCESVVTSGQHQHNPTPQHPPRDASPAGLLSIAEETLTEFLSKAKGAAVDWVQMPGMKPGPDSIGIVAISNTCNGVAARACGLVGLDPTKVAEILKDRPSWLRDCRCLDVLTAFPTGNGGTIELLYMQTYAATTLASARDFWTLRYTTVLEDGSLVVCERSLSGTQGGPSIPPVQHFVRAEMLPSGYLIQPCEGGGSIIRIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTIAALRRLRQIAQEATGEVVFGWGRQPAVLRTFSQRLSRGFNEAVNGFTDDGWSLMGSDGVEDVTIAINSSPNKHFASQVNASNGLTTLGGGILCAKASMLLQNVPPALLVRFLREHRSEWADSNIDAYSAAALKSSPYSVPGSRAGGFSGSQVILPLAHTVEHEEFLEVIKLEGHGLTQEEAVLSRDMFLLQLCSGIDENAAGACAELVFAPIDESFADDAPLLPSGFRVIPLESRTDGSGGPNRTLDLASALEVGSTGTRTSGDSGTSSNLRSVLTIAFQFTYESHLRENVAAMARQYVRSVVASVQRVAMAIAPSRLNSHVGPRPPPGTPEALTLARWICQSYRLHIGVDLFRADCEASESVLKLLWHHSDAIMCCSVKSLPVFTFANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGRPASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
290		85		14	0.993533
292	85		14		0.993533
293			14	85	0.993533
301	85			14	0.993533
366	10		90		0.90298
497	42		57		1.0
1303		87		12	0.992554
1559		10	90		0.999898
1900		20		80	0.995493
2520			30	70	1.0
2528	75	25			0.996473
2709		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain