SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3062

Length: 1993 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene3062
ATATTCGCTGATAGAGAGGAGTACTCTACAGGTAGAGCTCGGCTTACATCCAGTGATCAAGTCCAAGAAGAAGCCTGGCTCTCGGCTATGGATGCACTTTGATGCAACTGGGAATTCGGAGGTGCTCGAATGCGATAACAAATGATAATGAAGCGCGCATCAATTCCTGCGAGGGATTTGCGGATCCTGGGTCCCATCTTCTCCCATTCATCAAACATTCTCGCTAGGGAGAAAGCCATGGTGGTTAACTTGGAATTTATAAAGGCCATTGTCACTGCTGAAGAGGTCTTCTTGCTTGATCCTTTGAACCAAGCTGTTCTTCCATTTGTGGATCAACTCAGGCAACAACTTCCTCTCAAAATCCCATCAAGAATTCCGGAAAGCCATCATACAGATCAGCAAGAAAGACATGGCACCTCTGCCACAACTTCACCTGGACAGTGGCTGCCTGTCCCAGAGGCAGCAGAAGGGCTACAACGTGAACTTCCTTTTGAGTTCCGTGTGCTGGAAATTGCTTTGGAGGTGGTTTGCACCTACATGGACTCAGAGGTTGCAGAACTTGAACGACAGGCTTATCCTATATTGGATGAACTTGCCAGAAGTGTTAGTACCAAAAACCTTGAACGTGTGCGGAGCCTGAAAAGCAATCTTACTCGTCTCCTTGCTCGGGTCCAAAAGGTGAGAGATGAACTGGAACATCTTTTAGATGATGATGGCGACATGGCTGATTTGTATTTGACTCGGAAGTATCTCCAAAGTCAACAATGGGAAGCTTCAATAACAGCTGGAAGACAAAGTGCTCTAGCTATTACACCTTTTTCGTCTCACCTAAATTCTCGTCAGTTGAGCGCTTCTAGCTTTGTTACTAGTGTTGCTGGAGATGAAAACGATGTTGAAGATATTGAGATGCTGCTAGAGGCCTATTTCATGCAAGTTGATGGAACTCGCAACAAGATATTGTCGGTCCGTGAATACATTGACGACACGGAAGACTATGTGAATATTCAGCTTGATAACCAGCGTAATGAACTGATCCAGTTGCAGCTCACTCTGACTATAGCAACCTTCGCAATAACCCTTGCTACATTGATGGCAGGAACATTTGGAATGAATATTCATTGCCCACTCTACGACAAGCAGGGGGTGTTTTTCCCTTTCGTTGGATCTACTATGGCTCTCTGTCTCCTGCTTTTCTTTGCAATGTTAAGTTATGCCCGTTGGAAAGAACTACTTGGTACATAGGAAAAGATAAATTGCTTGAATACTTCGCTTTTAATGTGCATGGCTTCATAACTGAAGTGCTCGTGCGGCTGGAGTCTCTGTGTTTATTTTATTCAACAAATGGTGGTTTCAGTTTATATTGAGACCAAAATGAGGCCATTTTTTTTCACTTGGGGAAGGGAGTTGTATCACAGATTCTGGGGGTGATGATATATTGAGCACAGCTGTGTTATTTAGAAGAAATGGGCTTGTTACAGTGGAAAAATAGGATGCATGGCATCTCCTCATTACCCATGATCTAATTGATTTCTTTATCGAATTTAAGTCTATGTTTAGAACGATACTCTGGATCAAATAGGTCTATCGACCTTTTATATCGACACCTTTTAAGGAAATGCAAGTTTAGCAGGCGTGAATATGATTGCTTTTGCATTGGATCTTGTGCCAATTGCCAGACTACGTTCGTGTCTATGATAGGGGATCTAAAGAAGAAAACTCAAACTGTAAGCATTATATTTTGTTTCAAGGATATTTCGATGAGCCAGTCCAGATATTTATCACTCTTTGCTCTGGTTAAAAGGAATTTCCACAAGAGGATGGATAGTGGATCCTTCTTGTAGCTTATTTTCCAAATAAGCAAGCATGAATTTTCTTTAGGATTTTAATGAAGTGGTCTGTAAGGTATACCCCCACCTGGTGTTGGGAAACTGTATGGAATATAGCTAGTGCAACTATTTAAATTAAATCACTGGTAAATGTGGATAATCAATAC

Ace file of the UniGene sp_v1.1_unigene3062 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA splicing protein mrs2, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9SXF0_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	rna splicing protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	magnesium ion transmembrane transporter activity	GO:0015095	Molecular Function	0.0	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAV9

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 367 - 233

Fln protein: MIMKRASIPARDLRILGPIFSHSSNILAREKAMVVNLEFIKAIVTAEEVFLLDPLNQAVLPFVDQLRQQLPLKIPSRIPESHHTDQQERHGTSATTSPGQWLPVPEAAEGLQRELPFEFRVLEIALEVVCTYMDSEVAELERQAYPILDELARSVSTKNLERVRSLKSNLTRLLARVQKVRDELEHLLDDDGDMADLYLTRKYLQSQQWEASITAGRQSALAITPFSSHLNSRQLSASSFVTSVAGDENDVEDIEMLLEAYFMQVDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLTLTIATFAITLATLMAGTFGMNIHCPLYDKQGVFFPFVGSTMALCLLLFFAMLSYARWKELLGT*

Protein Length: 368

Fln nts: ATATTCGCTGATAGAGAGGAGTACTCTACAGGTAGAGCTCGGCTTACATCCAGTGATCAAGTCCAAGAAGAAGCCTGGCTCTCGGCTATGGATGCACTTTGATGCAACTGGGAATTCGGAGGTGCTCGAATGCGATAACAA_-_ATGATAATGAAGCGCGCATCAATTCCTGCGAGGGATTTGCGGATCCTGGGTCCCATCTTCTCCCATTCATCAAACATTCTCGCTAGGGAGAAAGCCATGGTGGTTAACTTGGAATTTATAAAGGCCATTGTCACTGCTGAAGAGGTCTTCTTGCTTGATCCTTTGAACCAAGCTGTTCTTCCATTTGTGGATCAACTCAGGCAACAACTTCCTCTCAAAATCCCATCAAGAATTCCGGAAAGCCATCATACAGATCAGCAAGAAAGACATGGCACCTCTGCCACAACTTCACCTGGACAGTGGCTGCCTGTCCCAGAGGCAGCAGAAGGGCTACAACGTGAACTTCCTTTTGAGTTCCGTGTGCTGGAAATTGCTTTGGAGGTGGTTTGCACCTACATGGACTCAGAGGTTGCAGAACTTGAACGACAGGCTTATCCTATATTGGATGAACTTGCCAGAAGTGTTAGTACCAAAAACCTTGAACGTGTGCGGAGCCTGAAAAGCAATCTTACTCGTCTCCTTGCTCGGGTCCAAAAGGTGAGAGATGAACTGGAACATCTTTTAGATGATGATGGCGACATGGCTGATTTGTATTTGACTCGGAAGTATCTCCAAAGTCAACAATGGGAAGCTTCAATAACAGCTGGAAGACAAAGTGCTCTAGCTATTACACCTTTTTCGTCTCACCTAAATTCTCGTCAGTTGAGCGCTTCTAGCTTTGTTACTAGTGTTGCTGGAGATGAAAACGATGTTGAAGATATTGAGATGCTGCTAGAGGCCTATTTCATGCAAGTTGATGGAACTCGCAACAAGATATTGTCGGTCCGTGAATACATTGACGACACGGAAGACTATGTGAATATTCAGCTTGATAACCAGCGTAATGAACTGATCCAGTTGCAGCTCACTCTGACTATAGCAACCTTCGCAATAACCCTTGCTACATTGATGGCAGGAACATTTGGAATGAATATTCATTGCCCACTCTACGACAAGCAGGGGGTGTTTTTCCCTTTCGTTGGATCTACTATGGCTCTCTGTCTCCTGCTTTTCTTTGCAATGTTAAGTTATGCCCGTTGGAAAGAACTACTTGGTACATAGGAAAAGATAAATTGCTTGAATACTTCGCTTTTAATGTGCATGGCTTCATAACTGAAGTGCTCGTGCGGCTGGAGTCTCTGTGTTTATTTTATTCAACAAATGGTGGTTTCAGTTTATATTGAGACCAAAATGAGGCCATTTTTTTTCACTTGGGGAAGGGAGTTGTATCACAGATTCTGGGGGTGATGATATATTGAGCACAGCTGTGTTATTTAGAAGAAATGGGCTTGTTACAGTGGAAAAATAGGATGCATGGCATCTCCTCATTACCCATGATCTAATTGATTTCTTTATCGAATTTAAGTCTATGTTTAGAACGATACTCTGGATCAAATAGGTCTATCGACCTTTTATATCGACACCTTTTAAGGAAATGCAAGTTTAGCAGGCGTGAATATGATTGCTTTTGCATTGGATCTTGTGCCAATTGCCAGACTACGTTCGTGTCTATGATAGGGGATCTAAAGAAGAAAACTCAAACTGTAAGCATTATATTTTGTTTCAAGGATATTTCGATGAGCCAGTCCAGATATTTATCACTCTTTGCTCTGGTTAAAAGGAATTTCCACAAGAGGATGGATAGTGGATCCTTCTTGTAGCTTATTTTCCAAATAAGCAAGCATGAATTTTCTTTAGGATTTTAATGAAGTGGTCTGTAAGGTATACCCCCACCTGGTGTTGGGAAACTGTATGGAATATAGCTAGTGCAACTATTTAAATTAAATCACTGGTAAATGTGGATAATCAATAC

Fln Alignment:

sp_v1.1_unigene3062___QMIMKRASIPARDLRILGPIFSHSSNILAREKAMVVNLEFIKAIVTAEEVFLLDPLNQAVLPFVDQLRQQLPLKIPSRIPESHHTDQQERHGTSATTSPGQWLPVPEAAEGLQRELPFEFRVLEIALEVVCTYMDSEVAELERQAYPILDELARSVSTKNLERVRSLKSNLTRLLARVQKV
D5AAV9______________QTIMKRVSIPKRDLRILGPLFSQSSNILAREKAMVVNLDFIKAIVTAEEVFVLDPLNQAVLPFVDQLRQQLPLKSPSASQESHHTDQRERHGTSAETSPGEWLLDPEAAEGLQLELPFEFRVLEIALEVSCTYMDSDVAELEREAYPALDKLAKNVSTKNLENVRSLKRNLTCLLARVQKL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1518	9	27		63	1.0
1554		80		20	0.999996
1555		20		80	0.999996
1556	30		70		1.0
1558	11	88			0.923564
1562	11		88		0.923564
1564	11		88		0.923564
1673	22		77		0.999999
1674	77		22		0.999999
1675	77			22	0.999999
1683		22		77	0.999999
1684	22			77	0.999999
1685	22		77		0.999999
1687			22	77	0.999999
1691	77	22			0.999999
1694		22	77		0.999999

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain