SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3048

Length: 1895 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3048

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Flavonoid 3-hydroxylase, putative n=1 Tax=Ricinus communis RepID=B9S5P8_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	elicitor-inducible cytochrome p450	-	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV76

Fln msg:

Fln protein: MDLLSVFLLPGMPTLAYLLLAIVSVCLIYWRLRPSAKLPPGPNAWPIIGNLNLMGKLPHRSMDRLSKTYGPLMYLRLGSMPCVVASSADMAREFLTTHDLTFSSRPRVAAGKYTLYNSCNITLSPYGEHWRLARKICLVELFSAKRLESFEHIRIEEVARMVDSVFETCQLGLPVKIKEETYAMSNNIISRMVLGRGYLDKEVGNKTRSKEFKEMFEELFLLIGVFNIGDFIPWLAWLDLQGYVRRMKTVSKRLDAFLEEVVEEHDRRRKGVENYVAKDMVDVLLQQADDPQVNLNRIRVKAYTLDMIAGGTETAATVVEWSLSELLKNPETLERAMEELDRVVGRERWVEEKDISELDYLQWIVKETMRLHPVVPTLVPRLSTQPCRIAGYDIPANTRLFVNVWTIGRDGELWENPEEFRPERFKGSTVDVKGRDYELLPFGSGRRMCPGYNLGLKVVQISLANLIHGFQWKLPDGQNLKDLDMGETFGLTTPKTYPLVAMARPRLPSHLYNLNSLLDSSHI*

Protein Length: 525

Fln nts: CTGTCTTTTTCA_-_ATGGATTTACTGTCGGTGTTTCTTCTTCCAGGAATGCCAACACTCGCCTATCTTCTGCTGGCAATCGTATCCGTTTGCTTGATCTACTGGCGTCTTCGTCCCTCTGCTAAATTGCCGCCCGGTCCCAATGCTTGGCCCATAATCGGAAACCTGAATCTCATGGGAAAACTACCCCACAGGTCTATGGATCGACTCTCCAAAACATACGGCCCCCTTATGTATCTCAGACTCGGATCCATGCCCTGCGTTGTCGCCTCCTCGGCTGATATGGCCCGAGAGTTTCTTACGACACACGACCTCACATTCTCGTCCCGACCCCGGGTCGCAGCCGGGAAATACACTCTCTACAACTCCTGCAATATCACCTTGTCTCCCTACGGAGAGCACTGGCGACTGGCCAGGAAAATCTGCCTCGTGGAGCTCTTCAGTGCCAAGCGCCTCGAATCCTTCGAGCACATCAGAATAGAAGAGGTGGCCCGAATGGTAGATTCAGTGTTCGAAACCTGCCAGCTGGGCCTCCCTGTAAAAATCAAGGAAGAGACATATGCTATGAGCAATAATATAATTTCCCGCATGGTGTTGGGAAGAGGGTATTTGGACAAGGAAGTGGGGAACAAGACGAGGTCCAAGGAATTCAAGGAGATGTTTGAAGAGTTGTTCTTGCTCATTGGGGTTTTTAATATCGGAGACTTTATACCGTGGCTCGCCTGGCTGGATCTCCAGGGTTACGTCCGGCGCATGAAGACGGTGAGTAAGCGGTTGGATGCATTTCTGGAGGAAGTAGTGGAAGAGCACGACAGACGAAGAAAAGGCGTGGAGAATTATGTGGCTAAGGATATGGTGGACGTTCTGCTGCAGCAGGCCGATGACCCCCAAGTCAATCTGAATCGAATCAGAGTCAAAGCATACACTCTGGACATGATCGCGGGCGGCACCGAGACCGCTGCGACGGTGGTGGAGTGGAGCCTGTCGGAACTCCTGAAAAATCCGGAGACTTTGGAAAGAGCCATGGAAGAGCTGGACAGAGTTGTGGGAAGAGAGCGATGGGTGGAAGAGAAGGACATCAGTGAACTGGATTATCTGCAGTGGATAGTGAAGGAGACGATGAGGCTCCATCCAGTGGTTCCCACGCTCGTCCCCCGTCTCTCCACTCAGCCCTGCAGAATCGCAGGATACGACATTCCTGCGAACACGAGGTTGTTCGTCAACGTGTGGACTATCGGCCGGGACGGCGAGTTATGGGAGAACCCCGAAGAGTTCCGGCCAGAGAGATTCAAAGGGAGCACGGTGGACGTGAAGGGCAGAGATTACGAGCTCCTGCCATTTGGATCGGGGAGGAGGATGTGCCCGGGATATAATCTGGGACTTAAAGTTGTTCAAATATCTCTGGCTAATCTCATCCATGGATTCCAGTGGAAGCTGCCTGATGGCCAAAACCTTAAGGACTTGGACATGGGCGAAACATTTGGGCTGACAACTCCTAAAACATACCCTCTTGTTGCAATGGCTCGACCTCGCCTGCCTTCCCATCTCTATAACTTAAATTCCCTTCTTGATAGCAGTCACATTTGA___TATCTACGCTGTAAAGTGTTTTAAATAAGAGATCTCAGAAATTCCCTTGATGATAGCAGTCACATTTGATTTCTATGTCCATGTCTAGCATAGTGACATGGTAATGCTACCTGCTGCTTGAACATTTATTTAGAGATCGCTATTGCTATTTAATTCTCTTCAATCCAAAAGGGTCATCACAATTCTTTCAGTAGTTAGTCCAACAACTCTGATGGAGTTCATCCTCGGTTACGGCATAGTCATATCTGAAGTCGTACTGTAGGAAAGTGTTTACAACATATGGCACTCCACTTGATTGAATGTAAATTCAA

Fln Alignment:

sp_v1.1_unigene3048___MDLLSVFLLPGMPTLAYLLLAIVSVCLIYWRLRPSAKLPPGPNAWPIIGNLNLMGKLPHRSMDRLSKTYGPLMYLRLGSMPCVVASSADMAREFLTTHDLTFSSRPRVAAGKYTLYNSCNITLSPYGEHWRLARKICLVELFSAKRLESFEHIRIEEVARMVDSVFETCQLGLPVKIKEETYAMSNNIISRMVLGRGYLDKEVGNKTRSXXXXXXXXXXXXXIGVFNIGDFIPWLAWLDLQGYVRRMKTVSKRLDAFLEEVVEEHDRRRKGVENYVAKDMVDVLLQQADDPQVNLNRIRVKAYTLDMIAGGTETAATVVEWSLSELLKNPETLERAMEELDRVVGRERWVEEKDISELDYLQWIVKETMRLHPVVPTLVPRLSTQPCRIAGYDIPANTRLFVNVWTIGRDGELWENPEEFRPERFKGSTVDVKGRDYELLPFGSGRRMCPGYNLGLKVVQISLANLIHGFQWKLPDGQNLKDLDMGETFGLTTPKTYPLVAMARPRLPSHLYNLNS
A9NV76______________MDLLSIFALPYLP-----VLAIVSVYLIYMRLRPSVKLPPGPRAWPIIGNLNLMGKLPHRSLDRLSKTYGPLMYIRLGSIPCVVASSAEMAREFLQTHDLTFSSRPQVASGKYTTYNYSDITWSPYGDYFRLARKVCLMELFSAKRLESFEYIRVEEVARMLGSVFETCQRGLPVEIRKETYGVSNNIISRMALGRRYFDKEAGNMMRLEELKEMLEEFFLLNGVFNIVDFIPWLGWLDLQGYVGRMKKLSERLDVFLEEVVEEHDRRRKGVENYVAKDMMDVLLKQADDPQLNLSRIKVKAFTLDIIAGGTETSATLVEWGLSELLKKPEMLERATKELDRVVGRERWVEEKDMGGLEYVQWIVKETMRLHPVAPLLVPHLSTQRCRIAGYDIPANTRVFVNVWSIGRDDQSWENPNEFRPERFKGSTVDVMGRDYELLPFGSGRRMCPGNSLGLKVVQIALANLIHGFQWKLPDGQSPKDLDMGEIFGLSTSKTCPLVAMARPRLPSHLYNFNS

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
522	87		12		0.992554
604		20	80		0.995493
760			85	14	0.993533
844			16	83	0.994512
880		20		80	0.995493
925	83		16		0.994512
926		83		16	0.994512
928		83		16	0.994512
929			16	83	0.994512
931	20			80	0.995493
1045			25	75	0.996473
1046			25	75	0.996473
1099		25		75	0.996473
1103			50	50	1.0
1138		66		33	0.997452
1350		30	70		1.0
1390	10			90	0.90298
1393			10	90	0.90298
1394			10	90	0.90298
1442	10			90	0.90298
1456		15		84	0.999986
1478	83	16			0.999991
1504		80		20	0.999996
1505	77		22		0.999999
1563		33		66	0.997452
1588			33	66	1.0
1589			20	80	0.999996
1611		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain