SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3023

Length: 462 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene3023
GCTGGGCTGCGGTTTACTCGACCTCAATCGAAACAGGGGGAACGAGGCGCCTGACGCCCGACGAAATCGCAGATTTTAGCCCCGCTGTGTCCCCCTCGGGCGAGTGGGTCATGGTGGCTTCCGAAGGAGAGCGGGGATGGCAGGGCGAAATACGCGATTTGGAGACCGATCTTTATGTATTCAGGGCCTCTGATGGTTCTGATAGGAGGCTTGTTGTGAAGCACGGCGGGTGGCCATCTTGGGCCGACGATAACACCGTGTTCTTCCACAGGCAGGCGGAGGACGGGTGGTGGAGCGTTTACAGAGTCTCCGTTAATTCCTCATCCGCCCCGGTGGAGAGAATTACCCCGCCGGGAATCGACGCCTTCACACCGGCTGCATCCCGTACCGGGCCTTGGATTGCTGTTGCCACGCGCAGGCCTGGGAACGACTATCGACACATAGAGATTTTCGACCTGGTGG

Ace file of the UniGene sp_v1.1_unigene3023 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	wd40-like beta propeller repeat family expressed	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	75%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Six-bladed beta-propeller, TolB-like	IPR011042	-	0.0	75%
Blast2go	WD40-like Beta Propeller	IPR011659	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN50

Fln msg: Distance to subject end: 358 aas, your sequence is shorter than subject: 153 - 714

Fln protein: WAAVYSTSIETGGTRRLTPDEIADFSPAVSPSGEWVMVASEGERGWQGEIRDLETDLYVFRASDGSDRRLVVKHGGWPSWADDNTVFFHRQAEDGWWSVYRVSVNSSSAPVERITPPGIDAFTPAASRTGPWIAVATRRPGNDYRHIEIFDLV

Protein Length: 154

Fln nts: GCTGGGCTGCGGTTTACTCGACCTCAATCGAAACAGGGGGAACGAGGCGCCTGACGCCCGACGAAATCGCAGATTTTAGCCCCGCTGTGTCCCCCTCGGGCGAGTGGGTCATGGTGGCTTCCGAAGGAGAGCGGGGATGGCAGGGCGAAATACGCGATTTGGAGACCGATCTTTATGTATTCAGGGCCTCTGATGGTTCTGATAGGAGGCTTGTTGTGAAGCACGGCGGGTGGCCATCTTGGGCCGACGATAACACCGTGTTCTTCCACAGGCAGGCGGAGGACGGGTGGTGGAGCGTTTACAGAGTCTCCGTTAATTCCTCATCCGCCCCGGTGGAGAGAATTACCCCGCCGGGAATCGACGCCTTCACACCGGCTGCATCCCGTACCGGGCCTTGGATTGCTGTTGCCACGCGCAGGCCTGGGAACGACTATCGACACATAGAGATTTTCGACCTGGTGG

Fln Alignment:

sp_v1.1_unigene3023___WAAVYSTSIETGGTRRLTPDEIADFSPAVSPSGEWVMVASEGERGWQGEIRDLETDLYVFRASDGSDRRLVVKHGGWPSWADDNTVFFHRQAEDGWWSVYRVSVNSSSAPVERITPPGIDAFTPAASRTGPWIAVATRRPGNDYRHIEIFDLV
B8LN50______________WAAVYSTSIKTGRTRRLTPDGIADLSPAVSPSGEWVMAASAGERGWQGEIRDLETDLYVFRASDGSGRRLVVKHGGWPSWADDNTVFFHRQAEDGWWSVYRASVNSSSALVERITPPGIDAFTPAASRTGPWIAVATRRPGHDYRHIEIFDLL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
138			88	11	0.923564
220	16	16			0.988813
225	85	14			0.993533
226	85			14	0.993533
227	16		83		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain