SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3021

Length: 2576 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3021
ATGGGGGTTTTCTTTCCCTTTTCGCTCCGTTCAATTCTTAGATGAACAGTATCATCTTTTCTTTTCCAACGGGTTTTCTCGGGAGAACGGGTATGGTTTCCTGGGCAGCGAATCTTAGCTACATCCCTTTCATATGCGTGTAAATGGGATGAGTTAATAGCTCCCTCCTCTGATGTTTTGTTGGATCGGTTTGAATATGCATGACTAGAAATTCACGATGCATTCTGCAGTGAAAAGGCGGGGTGGCCCATTGCAGAGGCCTGCTACTATTACTGGTCTCCTCTTGATTTCACTTGTAGCATCTCTCGTATTTCTAGCGGATAGACTCGCCGATTTCTCTGCTACCTCTGGGCAAAAGGACTTCATTGACAATATTTCTAGTATTAGTGTCAGTACCGATTCCGAAGAATTAAGGGCACTTGAGCAGGAACCGAGTGCTCTTCTTAAAAAACCTGTTGGAGTCATCTACAAGGATGGGATTAATACCTCAGTTAATATCAATGGTTTCTCAAAAGAGCACTCTGAAATTAAGGAAAAGATACAGTCTGGACGGAAGGAAAATGAATTCAAACCTGAGATATTTGTCTTGGAACAAGGAGATAAAAGAACAGAGAGTGTTGCCAACACTGCTGCTAAAGGAGAGGACCAAGTAAAACTTGAATTGCAGGGCACTTATAGTTCTCAGCAAATAAGTGCAAGAGAGTCTCAGAAAATGAGAATTCAGAGGCAAATCAGTCAGAAATTAATCCCAGATGCTCATGTAGGACAGATGCGTGATCAGAAGAAAATTATCCCAGACGCTCATGTACGGCTGATCCCCAGATGCTCATGTACGGCAGATGCGTGATCAGATTATTAGAGCTAAGGCATACTTAAACCTTGTACCAGCTCGCAATAATGCTCCCATTGTAAGAGAATTGCGGCAGCGGATTAGAGATGTACACCGAGCCTTAGGTGAAGCAACCAAGGATACTGAACTTTCAAGAAGAGCCCCTGAGAGAATAAGATCCATGGAGAGCACTCTTTTTAAAGCCAGCAAGCTTTTTAATGACTGTTCTGCTATGGTTAAGAAACTTCGAGCTATGATGCACTCTACAGAAGAACAACTTCGTGTGCACAAGAAGCAGAGTACATTCTTGATTCAGCTTGCTGCTAGAAGCTTTCCTAAAGGCCTTCATTGTTTACCGATGCGCTTGACCGCAGAGTACTATGCATTGACTCCAAGCGAACAGGAATTTCCAAACAAAGGGAAGTTGGATGATCCAAGTCTTCACCACCATGCCATATTTTCTGACAATATACTTGCAGCAGCAGTTGTTGTGAACTCTACTGTATTTCATTCTAAGGAAGCAGAAAAAATTGTGTTTCACCTAGTCACTGACAAGTTAAACTATGCGGCCATGCGAATGTGGTTTTTAGCAAACCCTCCTGGTAATGCTACGATTCAAGTTCAGAATATTGATGAATTCACATGGTTGAACTCCAGTTATTCTCCAATTTTGAAGCAACTTGAGTCTGCATCAATGAAAGAGTATTATTTGAAGTCACAGTATATGAGCCCAGATGGAGGATCTACTAACTTGAATTATCGAAATCCAAAGTATTTGAATATGCTTAATCACCTTCGCTTCTACCTGCCAGAGGTCTTTCCAAAGCTCAATAAGGTCCTTTTCTTAGACGATGATGTTGTAGTGCAAAAGGATTTGACTGCTCTTTGGGGGATTGACACGCATGGTAAGGTAAATGCTGCAGTGGAAATATGTGGAGAAAATTTCTTTCGACTTGATAAATATCTGAATTTTTCAAATCCTCTTATTGCGAGGGACTTTGACCCAAATTCCTGTGTATGGGGATATGGCATGAATATATTTGATTTGCAAGAATGGAAAAAACAGGACTTGACAGCGATCTACCATAAATGGCAAAATCTGAACAAGGACAGACAGTTGGTGAAGCTGGGCAGCCTGCCACTTGGGCTAATCACTTTTTACAACCTTACTCATGCACTTGATAAGTCTTGGCATGTTCTAGGCCTTGGCTACAATCCTAGTGTTAGTCGGACTGATATTGCGAAGGCAGCAGTGATACATTACAATGGCAACATGAAACCGTGGCTTGAAATTGGCATTGCAAGATACAAACAACATTGGACCAAGTATGTGAAATATGACCATATATTCATGCAGCAGTGCAACCTTGGTGAGTAGGTATATATGATAGTTTATTGTACATATGCTATTGGAGCCCTGAGTACTCCCTATAATTGCTAGCCAGAGGAATTGCGCCAATTGTAATTGGAGTAGTTGAGCAGAGGTATCATTCTTTTGTTTCCATTGGTTGGGGACTTAGAGGGGTGGATTGAACAGTCTGGAAAATCACTGAAGTAATAGTTTCCTCTACTCCACATTTGGAGAAATGAGGAAATTCTCTGTGTATTGTAATTGTTTCTCAAAGGAACGTACATAGGAAACATGTTGTACAATTTCATTCTTTCACGAGGGAGATATTGAGTTTTGTCGAGCACATTATTTGGCAGTTTATTATCCTGAACATCTTGTTTATAGTAAATTTCTTTT

Ace file of the UniGene sp_v1.1_unigene3021

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase QUASIMODO1, putative n=1 Tax=Ricinus communis RepID=B9SGW0_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	22%
Blast2go	cazy family gt8	-	-	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 8	IPR002495	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYU2

Fln msg: your sequence is longer than subject: 456 - 381

Fln protein: MRDQIIRAKAYLNLVPARNNAPIVRELRQRIRDVHRALGEATKDTELSRRAPERIRSMESTLFKASKLFNDCSAMVKKLRAMMHSTEEQLRVHKKQSTFLIQLAARSFPKGLHCLPMRLTAEYYALTPSEQEFPNKGKLDDPSLHHHAIFSDNILAAAVVVNSTVFHSKEAEKIVFHLVTDKLNYAAMRMWFLANPPGNATIQVQNIDEFTWLNSSYSPILKQLESASMKEYYLKSQYMSPDGGSTNLNYRNPKYLNMLNHLRFYLPEVFPKLNKVLFLDDDVVVQKDLTALWGIDTHGKVNAAVEICGENFFRLDKYLNFSNPLIARDFDPNSCVWGYGMNIFDLQEWKKQDLTAIYHKWQNLNKDRQLVKLGSLPLGLITFYNLTHALDKSWHVLGLGYNPSVSRTDIAKAAVIHYNGNMKPWLEIGIARYKQHWTKYVKYDHIFMQQCNLGE*

Protein Length: 457

Fln nts: ATGGGGGTTTTCTTTCCCTTTTCGCTCCGTTCAATTCTTAGATGAACAGTATCATCTTTTCTTTTCCAACGGGTTTTCTCGGGAGAACGGGTATGGTTTCCTGGGCAGCGAATCTTAGCTACATCCCTTTCATATGCGTGTAAATGGGATGAGTTAATAGCTCCCTCCTCTGATGTTTTGTTGGATCGGTTTGAATATGCATGACTAGAAATTCACGATGCATTCTGCAGTGAAAAGGCGGGGTGGCCCATTGCAGAGGCCTGCTACTATTACTGGTCTCCTCTTGATTTCACTTGTAGCATCTCTCGTATTTCTAGCGGATAGACTCGCCGATTTCTCTGCTACCTCTGGGCAAAAGGACTTCATTGACAATATTTCTAGTATTAGTGTCAGTACCGATTCCGAAGAATTAAGGGCACTTGAGCAGGAACCGAGTGCTCTTCTTAAAAAACCTGTTGGAGTCATCTACAAGGATGGGATTAATACCTCAGTTAATATCAATGGTTTCTCAAAAGAGCACTCTGAAATTAAGGAAAAGATACAGTCTGGACGGAAGGAAAATGAATTCAAACCTGAGATATTTGTCTTGGAACAAGGAGATAAAAGAACAGAGAGTGTTGCCAACACTGCTGCTAAAGGAGAGGACCAAGTAAAACTTGAATTGCAGGGCACTTATAGTTCTCAGCAAATAAGTGCAAGAGAGTCTCAGAAAATGAGAATTCAGAGGCAAATCAGTCAGAAATTAATCCCAGATGCTCATGTAGGACAGATGCGTGATCAGAAGAAAATTATCCCAGACGCTCATGTACGGCTGATCCCCAGATGCTCATGTACGGCAG_-_ATGCGTGATCAGATTATTAGAGCTAAGGCATACTTAAACCTTGTACCAGCTCGCAATAATGCTCCCATTGTAAGAGAATTGCGGCAGCGGATTAGAGATGTACACCGAGCCTTAGGTGAAGCAACCAAGGATACTGAACTTTCAAGAAGAGCCCCTGAGAGAATAAGATCCATGGAGAGCACTCTTTTTAAAGCCAGCAAGCTTTTTAATGACTGTTCTGCTATGGTTAAGAAACTTCGAGCTATGATGCACTCTACAGAAGAACAACTTCGTGTGCACAAGAAGCAGAGTACATTCTTGATTCAGCTTGCTGCTAGAAGCTTTCCTAAAGGCCTTCATTGTTTACCGATGCGCTTGACCGCAGAGTACTATGCATTGACTCCAAGCGAACAGGAATTTCCAAACAAAGGGAAGTTGGATGATCCAAGTCTTCACCACCATGCCATATTTTCTGACAATATACTTGCAGCAGCAGTTGTTGTGAACTCTACTGTATTTCATTCTAAGGAAGCAGAAAAAATTGTGTTTCACCTAGTCACTGACAAGTTAAACTATGCGGCCATGCGAATGTGGTTTTTAGCAAACCCTCCTGGTAATGCTACGATTCAAGTTCAGAATATTGATGAATTCACATGGTTGAACTCCAGTTATTCTCCAATTTTGAAGCAACTTGAGTCTGCATCAATGAAAGAGTATTATTTGAAGTCACAGTATATGAGCCCAGATGGAGGATCTACTAACTTGAATTATCGAAATCCAAAGTATTTGAATATGCTTAATCACCTTCGCTTCTACCTGCCAGAGGTCTTTCCAAAGCTCAATAAGGTCCTTTTCTTAGACGATGATGTTGTAGTGCAAAAGGATTTGACTGCTCTTTGGGGGATTGACACGCATGGTAAGGTAAATGCTGCAGTGGAAATATGTGGAGAAAATTTCTTTCGACTTGATAAATATCTGAATTTTTCAAATCCTCTTATTGCGAGGGACTTTGACCCAAATTCCTGTGTATGGGGATATGGCATGAATATATTTGATTTGCAAGAATGGAAAAAACAGGACTTGACAGCGATCTACCATAAATGGCAAAATCTGAACAAGGACAGACAGTTGGTGAAGCTGGGCAGCCTGCCACTTGGGCTAATCACTTTTTACAACCTTACTCATGCACTTGATAAGTCTTGGCATGTTCTAGGCCTTGGCTACAATCCTAGTGTTAGTCGGACTGATATTGCGAAGGCAGCAGTGATACATTACAATGGCAACATGAAACCGTGGCTTGAAATTGGCATTGCAAGATACAAACAACATTGGACCAAGTATGTGAAATATGACCATATATTCATGCAGCAGTGCAACCTTGGTGAGTAG___GTATATATGATAGTTTATTGTACATATGCTATTGGAGCCCTGAGTACTCCCTATAATTGCTAGCCAGAGGAATTGCGCCAATTGTAATTGGAGTAGTTGAGCAGAGGTATCATTCTTTTGTTTCCATTGGTTGGGGACTTAGAGGGGTGGATTGAACAGTCTGGAAAATCACTGAAGTAATAGTTTCCTCTACTCCACATTTGGAGAAATGAGGAAATTCTCTGTGTATTGTAATTGTTTCTCAAAGGAACGTACATAGGAAACATGTTGTACAATTTCATTCTTTCACGAGGGAGATATTGAGTTTTGTCGAGCACATTATTTGGCAGTTTATTATCCTGAACATCTTGTTTATAGTAAATTTCTTTT

Fln Alignment:

sp_v1.1_unigene3021___LRFYLPEVFPKLNKVLFLDDDVVVQKDLTALWGIDTHGKVNAAVEICGENFFRLDKYLN--FSNPLIAR-DFDPNSCVWGYGM-----------NIFDLQEWKKQDLTAIYHKWQNLNKDRQLVKLGSLPLGLITFYNLTHALDKSWHVLGLGYNPSVSRTD--IAKAAVIHYNGNMKPWLEIGIARYKQHWTK
A9NYU2______________LPFYIPKIYQNLRRFIYAVPDIIVKGKVEELFQVNLTNSPVAAVEDCSHNF----EYINAKSSRPWVAQTPYAKNTCILDHSVLLVNVELLAKENFMEVTKWKK-----LFHTGGRNDQSDQAIML---------------ALNGNYTKLDASWNSRESRFSGIDSDVKIFHFDGEKKPWLKQAEGRRHTNMTK

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
79		66		33	0.997452
178	12			87	0.992554
180			12	87	0.992554
182			12	87	0.992554
183			12	87	0.992554
333		16	83		0.994512
1028	25			75	0.996473
1274		50		50	1.0
1306		33		66	0.997452
2025	16	83			0.994512
2027			16	83	0.994512
2131		16		83	0.994512
2204	12	87			0.992554
2206			12	87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain