SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3020

Length: 2634 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3020
ATGGGGGGGGATGTGTTTGGTATAAAAGAGTGGGAGGAGCTCAGGATGGGGAAGGCGGCCAGAGCTAAAGTTGGGAGTTCCACTACCAGACCATTAATTCAAGATTCATCCCACCTCAGCCTGGAAATTTGGTCTGAATCTGGAGCTCAATACTGCACAAGTACCTTTGGTCTCTTCGGGAATCGTGTTTGGAAGAAGAAATTGAGATCCGGCCAAAGATGGTTGCAGGGGCAGACCTGGGCGCTGTGGAGGCCAATGGAAATCAAAATGGAAATGGATTTCATCATGTGCATTCTGTTGATCTCTGCATTCAGAATGGACCAGACCCTCTGAATTGGGGGCAGGCTGCCAAGGCCCTGCAGGGCTCCCACTTTGAAGAAGTGAAGCTCATGGTGGAGTCCTATTTCGGATGCGAGGAAGTTTCCATTGAAGGCAAATCGCTCACAATCGCGGATGTAACCGCAGTTGCCAGGAGACCAGAGGCCAAGGTGAGATTAGATGCAGTGTCAGCGAAGGCACGGGTGGATGAAAGCTCTAACTGGGTTCTGCAAAACATGCTCAAGGGCACTGATACATACGGTGTGACGACAGGCTTCGGAGCCACTTCGCACAGACGAACGAACCAGGGGGCCGAGCTGCAGAAGGAGCTCATCAGGTTCTTGAATTCGGGAGTCCTGACAGAGGGCAACATTCTGCCGCAAGAAACGACCCGGGCAGCCATGCTGGTGCGCACAAATACTCTGATGCAGGGGTACTCTGGAATCCGGTGGGAGATTCTGGAAACAATCCAGAAACTACTGAATGCGGGAATTATTCCGAAATTGCCTGTGAAGGGCACCATTTCATCCTCGGGCGACCTGGTACCGTTGTCCTACATTGCAGGTTTCATAACAGGGCGACCCAATTCGAGAGCCAGATGCATAGACGGTAAGGAACTCGGTGCTCTGGAAGCGCTTCAGCAAATCGGAGTCGAGAAGCCCTTTGAGCTCCAGCCCAAGGAAGGATTAGCCATCGTTAACGGGACCTCGGTCGGAGCTGCTCTGGCTTCCATCGTTTGCTTCGATGCCAACATTATCTGCATTGCTGCAGAAGTTCTGTCCGCCATGTTCTGCGAAGTGATGCTCGGGAAACCAGAGTTCACAGACCCATTGACACACAGGCTGAAGCACCATCCTGCCCAAATGGAAGCCGCGGCCATAATGGAATATGTTCTGGATGGGAGCTCCTACATGAAAAATGCCGCAAAAAAGCACGAGATGAATCCCCTGCAGAAGCCGAAGCAGGATCGTTATGCTCTCAGAACCTCGCCACAGTGGCTCGGTCCCCAAATCGAAGTCATCAGATCCGCTACCCACATGATCCAGCGAGAGATTAACTCTGTCAATGACAACCCTGTAATTGATGTTGCTCGAGACAAAGCACTGCACGGCGGGAACTTCCAGGGGACCCCAATCGGTGTCTCCATGGACAACCTGCGCCTCGCTCTCGCCGCAATCGGGAAGCTAATGTTCGCCCAATTCTCGGAGCTCGTCAACGATTACTACAACGGTGGCCTGCCTTCGAATCTCAGCGGTGGCCCCAACCCGAGCCTCGACTACGGCTTCAAGGGCGCCGAGATAGCCATGGCTTCCTACACATCGGAGCTTCTGTACCTCGCCAGCCCTGTCACCACCCACGTCCAGAGCGCCGAGCAGCACAACCAAGATGTCAATTCTCTGGGCCTCATCTCAGCCCGCAAATCAGCCGAGGCAATCGACATACTCAATCTCATGGTCTCCACGTATTTGCTCGCGCTCTGTCAGGCCGCGGATTTGCGACACCTGGAAGAAAACATGCTGAGCACCGTGAAGCACGTCGTCTCCCACGTGGCCAAGAAAACACTGAGCACGCACAACGGGGAGCTTCTCACCGCCGGGCGCTTCTGCGAAAAAGACCTCCTCCAGGCCGTCGAGAACCTCCACGTCTTCGCCTACGTGGACGATCCCTGCAACGAGAACTACCCATTGATGCAACAGCTCAGACAAGTTCTCGTTGCCCACGCTCTGACCGAGACTGCCCAAATTCAAACTCAAACCCAGTCCTCCATTTTCAACAAGATTCCCGCCTTCGAGAAAGAATTGAAAGAGCAAATGGAAGCAGAAATAGGGCGCGCTCGCCAGGACTACTACGAAAGGGGGGTCGCGGGTTCGATTCCCAACAGAATCCAGGAATGCAGATCCTTTCCTCTCTACGACTTCGCGAGATCGCAGCTCGGCACCCAGCTCCTTTCCGGCGACCGGGTAACTTCTCCGGGCGAATATATTGAAAAGGTTTACACCGGAATCCGTGACGGCAAGATTATTTCGCCCCTCTTCAAGTGCCTGGACGGATGGTCTGGAACTCCCGGGCCATTTCACAGTTAAATTCCTGAACCATCATCCTGTTATATATAGTTTGCAAATTGAATAAATGGAGTAATATATTAAGCATTGGAAACGGCAGGAGCACCTGCAGCACGTTTTGCATAGAATGTACTATGAACACAGGTCGCGCCTGGCCAGTTTAATGCTGTGTATAGTCATTTTTGAATTCAAAATCTGAATTGTGTGTGGATTACAATTTGACAAACCGATTTTCGCCGGTGTTGGGAAATAT

Ace file of the UniGene sp_v1.1_unigene3020

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phenylalanine ammonia-lyase n=2 Tax=Pinus pinaster RepID=Q7XJC3_PINPS	-	-	98%
FL-Next	sp=Phenylalanine ammonia-lyase; Pinus pinaster (Maritime pine).	-	-	99%
Blast2go	phenylalanine ammonia-lyase	-	-	85%

Source	InterPros	Term	Type	Identity
Blast2go	Aromatic amino acid lyase	IPR001106	-	85%
Blast2go	Phenylalanine ammonia-lyase	IPR005922	-	85%
Blast2go	L-Aspartase-like	IPR008948	-	85%
Blast2go	Phenylalanine/histidine ammonia-lyases, active site	IPR022313	-	85%
Blast2go	Phenylalanine ammonia-lyase, shielding domain	IPR023144	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q7XJC3

Fln msg:

Fln protein: MVAGADLGAVEANGNQNGNGFHHVHSVDLCIQNGPDPLNWGQAAKALQGSHFEEVKLMVESYFGCEEVSIEGKSLTIADVTAVARRPEAKVRLDAVSAKARVDESSNWVLQNMLKGTDTYGVTTGFGATSHRRTNQGAELQKELIRFLNSGVLTEGNILPQETTRAAMLVRTNTLMQGYSGIRWEILETIQKLLNAGIIPKLPVKGTISSSGDLVPLSYIAGFITGRPNSRARCIDGKELGALEALQQIGVEKPFELQPKEGLAIVNGTSVGAALASIVCFDANIICIAAEVLSAMFCEVMLGKPEFTDPLTHRLKHHPAQMEAAAIMEYVLDGSSYMKNAAKKHEMNPLQKPKQDRYALRTSPQWLGPQIEVIRSATHMIQREINSVNDNPVIDVARDKALHGGNFQGTPIGVSMDNLRLALAAIGKLMFAQFSELVNDYYNGGLPSNLSGGPNPSLDYGFKGAEIAMASYTSELLYLASPVTTHVQSAEQHNQDVNSLGLISARKSAEAIDILNLMVSTYLLALCQAADLRHLEENMLSTVKHVVSHVAKKTLSTHNGELLTAGRFCEKDLLQAVENLHVFAYVDDPCNENYPLMQQLRQVLVAHALTETAQIQTQTQSSIFNKIPAFEKELKEQMEAEIGRARQDYYERGVAGSIPNRIQECRSFPLYDFARSQLGTQLLSGDRVTSPGEYIEKVYTGIRDGKIISPLFKCLDGWSGTPGPFHS*

Protein Length: 729

Fln nts: ATGGGGGGGGATGTGTTTGGTATAAAAGAGTGGGAGGAGCTCAGGATGGGGAAGGCGGCCAGAGCTAAAGTTGGGAGTTCCACTACCAGACCATTAATTCAAGATTCATCCCACCTCAGCCTGGAAATTTGGTCTGAATCTGGAGCTCAATACTGCACAAGTACCTTTGGTCTCTTCGGGAATCGTGTTTGGAAGAAGAAATTGAGATCCGGCCAAAG_-_ATGGTTGCAGGGGCAGACCTGGGCGCTGTGGAGGCCAATGGAAATCAAAATGGAAATGGATTTCATCATGTGCATTCTGTTGATCTCTGCATTCAGAATGGACCAGACCCTCTGAATTGGGGGCAGGCTGCCAAGGCCCTGCAGGGCTCCCACTTTGAAGAAGTGAAGCTCATGGTGGAGTCCTATTTCGGATGCGAGGAAGTTTCCATTGAAGGCAAATCGCTCACAATCGCGGATGTAACCGCAGTTGCCAGGAGACCAGAGGCCAAGGTGAGATTAGATGCAGTGTCAGCGAAGGCACGGGTGGATGAAAGCTCTAACTGGGTTCTGCAAAACATGCTCAAGGGCACTGATACATACGGTGTGACGACAGGCTTCGGAGCCACTTCGCACAGACGAACGAACCAGGGGGCCGAGCTGCAGAAGGAGCTCATCAGGTTCTTGAATTCGGGAGTCCTGACAGAGGGCAACATTCTGCCGCAAGAAACGACCCGGGCAGCCATGCTGGTGCGCACAAATACTCTGATGCAGGGGTACTCTGGAATCCGGTGGGAGATTCTGGAAACAATCCAGAAACTACTGAATGCGGGAATTATTCCGAAATTGCCTGTGAAGGGCACCATTTCATCCTCGGGCGACCTGGTACCGTTGTCCTACATTGCAGGTTTCATAACAGGGCGACCCAATTCGAGAGCCAGATGCATAGACGGTAAGGAACTCGGTGCTCTGGAAGCGCTTCAGCAAATCGGAGTCGAGAAGCCCTTTGAGCTCCAGCCCAAGGAAGGATTAGCCATCGTTAACGGGACCTCGGTCGGAGCTGCTCTGGCTTCCATCGTTTGCTTCGATGCCAACATTATCTGCATTGCTGCAGAAGTTCTGTCCGCCATGTTCTGCGAAGTGATGCTCGGGAAACCAGAGTTCACAGACCCATTGACACACAGGCTGAAGCACCATCCTGCCCAAATGGAAGCCGCGGCCATAATGGAATATGTTCTGGATGGGAGCTCCTACATGAAAAATGCCGCAAAAAAGCACGAGATGAATCCCCTGCAGAAGCCGAAGCAGGATCGTTATGCTCTCAGAACCTCGCCACAGTGGCTCGGTCCCCAAATCGAAGTCATCAGATCCGCTACCCACATGATCCAGCGAGAGATTAACTCTGTCAATGACAACCCTGTAATTGATGTTGCTCGAGACAAAGCACTGCACGGCGGGAACTTCCAGGGGACCCCAATCGGTGTCTCCATGGACAACCTGCGCCTCGCTCTCGCCGCAATCGGGAAGCTAATGTTCGCCCAATTCTCGGAGCTCGTCAACGATTACTACAACGGTGGCCTGCCTTCGAATCTCAGCGGTGGCCCCAACCCGAGCCTCGACTACGGCTTCAAGGGCGCCGAGATAGCCATGGCTTCCTACACATCGGAGCTTCTGTACCTCGCCAGCCCTGTCACCACCCACGTCCAGAGCGCCGAGCAGCACAACCAAGATGTCAATTCTCTGGGCCTCATCTCAGCCCGCAAATCAGCCGAGGCAATCGACATACTCAATCTCATGGTCTCCACGTATTTGCTCGCGCTCTGTCAGGCCGCGGATTTGCGACACCTGGAAGAAAACATGCTGAGCACCGTGAAGCACGTCGTCTCCCACGTGGCCAAGAAAACACTGAGCACGCACAACGGGGAGCTTCTCACCGCCGGGCGCTTCTGCGAAAAAGACCTCCTCCAGGCCGTCGAGAACCTCCACGTCTTCGCCTACGTGGACGATCCCTGCAACGAGAACTACCCATTGATGCAACAGCTCAGACAAGTTCTCGTTGCCCACGCTCTGACCGAGACTGCCCAAATTCAAACTCAAACCCAGTCCTCCATTTTCAACAAGATTCCCGCCTTCGAGAAAGAATTGAAAGAGCAAATGGAAGCAGAAATAGGGCGCGCTCGCCAGGACTACTACGAAAGGGGGGTCGCGGGTTCGATTCCCAACAGAATCCAGGAATGCAGATCCTTTCCTCTCTACGACTTCGCGAGATCGCAGCTCGGCACCCAGCTCCTTTCCGGCGACCGGGTAACTTCTCCGGGCGAATATATTGAAAAGGTTTACACCGGAATCCGTGACGGCAAGATTATTTCGCCCCTCTTCAAGTGCCTGGACGGATGGTCTGGAACTCCCGGGCCATTTCACAGTTAA___ATTCCTGAACCATCATCCTGTTATATATAGTTTGCAAATTGAATAAATGGAGTAATATATTAAGCATTGGAAACGGCAGGAGCACCTGCAGCACGTTTTGCATAGAATGTACTATGAACACAGGTCGCGCCTGGCCAGTTTAATGCTGTGTATAGTCATTTTTGAATTCAAAATCTGAATTGTGTGTGGATTACAATTTGACAAACCGATTTTCGCCGGTGTTGGGAAATAT

Fln Alignment:

sp_v1.1_unigene3020___MVAGADLGAVEANGNQNGNGFHHVHSVDLCIQNGPDPLNWGQAAKALQGSHFEEVKLMVESYFGCEEVSIEGKSLTIADVTAVARRPEAKVRLDAVSAKARVDESSNWVLQNMLKGTDTYGVTTGFGATSHRRTNQGAELQKELIRFLNSGVLTEGNILPQETTRAAMLVRTNTLMQGYSGIRWEILETIQKLLNAGIIPKLPVKGTISSSGDLVPLSYIAGFITGRPNSRARCIDGKELGALEALQQIGVEKPFELQPKEGLAIVNGTSVGAALASIVCFDANIICIAAEVLSAMFCEVMLGKPEFTDPLTHRLKHHPAQMEAAAIMEYVLDGSSYMKNAAKKHEMNPLQKPKQDRYALRTSPQWLGPQIEVIRSATHMIQREINSVNDNPVIDVARDKALHGGNFQGTPIGVSMDNLRLALAAIGKLMFAQFSELVNDYYNGGLPSNLSGGPNPSLDYGFKGAEIAMASYTSELLYLASPVTTHVQSAEQHNQDVNSLGLISARKSAEAIDILNLMVSTYLLALCQAADLRHLEENMLSTVKHVVSHVAKKTLSTHNGELLTAGRFCEKDLLQAVENLHVFAYVDDPCNENYPLMQQLRQVLVAHALTETAXXXXXXXXXXFNKIPAFEKELKEQMEAEIGRARQDYYERGVAGSIPNRIQECRSFPLYDFARSQLGTQLLSGDRVTSPGEYIEKVYTGIRDGKIISPLFKCLDGWSGTPGPFHS
Q7XJC3______________MVAGADLGAVEANGNQNGNGFHHVHSVDLCIQNGPDPLNWGQAAKALQGSHFEEVKLMVESYFGCEEVSIEGKSLTIADVTAVARRPEAKVRLDAVSAKARVDESSNWVLQNMLKGTDTYGVTTGFGATSHRRTNQGAELQKELIRFLNSGVLTEGNILPQETTRAAMLVRTNTLMQGYSGIRWEILETIQKLLNAGIIPKLPVKGTISSSGDLVPLSYIAGFITGRPNSRARCIDGKELGALEALQQIGVEKPFELQPKEGLAIVTGPRLGAALASIVCFDANIICIAAEVLSAMFCEVMLGKPEFTDPLTHRLKHHPAQMEAAAIMEYVLDGSSYMKNAAKKHEMNPLQKPKQDRYALRTSPQWLGPQIEVIRSATHMIQREINSVNDNPVIDVARDKALHGGNFQGTPIGVSMDNLRLALAAIGKLMFAQFSELVNDYYNGGLPSNLSGGPNPSLDYGFKGAEIAMASYTSELLYLASPVTTHVQSAEQHNQDVNSLGLISARKSAEAIDILNLMVSTYLLALCQAADLRHLEENMLSTVKHVVSHVAKKTLSTHNGELLTAGRFCEKDLLQAVENLHVFAYVDDPCNENYPLMQQLRQVLVAHALTETAQIQTQTQSSIFNKIPAFEKELKEQMEAEIGRARQDYYERGVAGSIPNRIQECRSFPLYDFARSQLGTQLLSGDRVTSPGEYIEKVYTGIRDGKIISPLFKCLDGWSGTPGPFHS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
2117	66			33	0.997452
2119	66		33		0.997452
2120	66		33		0.997452
2185		80	20		0.995493
2251	87		12		0.992554
2269		12		87	0.992554
2517		45	55		1.0
2529		10	90		0.999898
2602	20			80	0.995493
2606	33		66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain