SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3000

Length: 1591 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3000

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger-homeodomain protein 2 n=1 Tax=Saruma henryi RepID=B0LK13_SARHE	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	61%
Blast2go	protein binding	GO:0005515	Molecular Function	61%
Blast2go	transcription activator activity	GO:0016563	Molecular Function	61%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWR9

Fln msg:

Fln protein: MFCGGDGEGLMLEQRALGHMMDLGNTQHMPVSMSAPYGVYPSGNGNGNAAIIMVLPHDESSSNPLNPQNPINPRNPMEAASAPLPTKVLRYRECQRNHAANIGGHALDGCGEFMPAEDDTLKCAACGCHRNFHRREVEGDEQPPSNCECCLRKKRGGGSSSGPGSPAAPYYPLPLPHGSSAPHMLMALSSGLTESDDPDGNTHNNSNNNNLSHHHHRGMKKRFRTKFSQDQKEKMHLFAEKMGWRMQKQDEAIVQQFCNEIGVGKGVLKVWMHNNKHTLGKKS*

Protein Length: 285

Fln nts: ATGGGAAGGACAAAGGCAGCAGAGCGGAAATCTAGTTGAAATTCTTGGTCTGGATCCCCATGTTGATCAGCGGTGTCTATTGGCTGAGCCAAGGTAGACAGGCCTGTGCTCATTCCCTTTCCGCCTCTTCTCTGCAAACAGCAAGAAACGAGAGCAACAATGTTCGACAGTTGGAGCATCGATAACAGTACACCTGAATGGCCAATGCTGGACTGAAGCGAATTTGCAGAAGACGCCCTTCTGGAAAATGAAATCAAGGCGGAGAGTGGTCGAATACAGTCGCGGGTTCGAGTCAAGCCGGATGCTGAAGGCAGCGTAAGAGACGAAGCAGCAGTT_-_ATGTTTTGCGGCGGCGACGGTGAGGGTTTGATGCTCGAACAGAGGGCATTGGGGCACATGATGGATCTGGGAAACACCCAGCATATGCCCGTTTCGATGTCGGCACCTTACGGTGTGTATCCCAGTGGCAACGGCAATGGAAATGCCGCCATCATTATGGTGCTCCCGCACGACGAGAGCTCCTCCAATCCCCTAAACCCTCAAAATCCTATAAACCCTCGAAACCCTATGGAGGCGGCGTCTGCACCGCTTCCTACCAAAGTTCTGCGCTACAGAGAGTGCCAGCGGAACCACGCGGCCAACATCGGTGGCCACGCCCTCGATGGTTGCGGGGAGTTCATGCCCGCCGAGGACGACACGTTGAAGTGTGCAGCCTGCGGGTGCCACCGCAACTTCCACCGCCGAGAGGTAGAGGGCGACGAGCAACCGCCCTCCAACTGCGAGTGCTGCCTCCGCAAGAAGCGTGGCGGCGGATCCTCGTCAGGGCCGGGATCCCCTGCTGCCCCTTATTACCCCCTCCCTTTGCCCCACGGTTCCTCGGCTCCCCATATGCTCATGGCGCTAAGCTCTGGTCTTACCGAGTCTGATGATCCCGATGGCAATACCCACAACAACAGTAATAATAATAACCTCAGTCACCATCATCATAGAGGCATGAAGAAGAGGTTCAGGACCAAGTTCTCGCAGGATCAGAAGGAAAAGATGCATTTGTTCGCAGAGAAGATGGGGTGGAGGATGCAGAAGCAGGATGAGGCTATTGTGCAGCAGTTTTGTAATGAAATTGGCGTCGGGAAGGGTGTTTTGAAGGTCTGGATGCATAACAACAAGCATACACTCGGTAAGAAATCTTGA___AAATTATGTGATCGACACGGGGGTTTATTGAATTTCTATGGATTTCAGCCATTCTTTCGGGGTTTAGGGAGCAGCTGTTTTCTGCTTAATCCTTTTTATTTCCTGAATTTATGAATAGAAAAATATCTCTTTCCTTTCGATCTCATCCCTGAATCCTTCCTTCATCACGAGAAGGGTATCAGGGTATCTTCTGTTGAGATCTTGCACTGCAGAGATCGAAGTCAGCATAAGTGTAAAGTAATTTATTCCCTTCTTTTAGGCAGCTTTTGTATTCAATTAGGGTTATGTCGGCTTGTGCCTATATGGTCCGTGGTTCTGCCATTTGGCCTTGAGTAATTTAATGGGCTGCTAATTACCCTTTTCATTTTTAAGTTGTTGATGCGAAGTATGGTTTGGATTTTAA

Fln Alignment:

sp_v1.1_unigene3000___MFCGGDGEGLMLEQRALGHMMDLGNTQHMPVSMSAPYGVYPSGNGNGNAAIIMVLPHDESSSNPLNPQNPINPRNPMEAASAPLPTKVLRYRECQRNHAANIGGHALDGCGEFMPAEDDTLKCAACGCHRNFHRREVEGDEQPPSNCECCLRKKRXXXXXXXXXXXXXXXXXXXXXHGSSAPHMLMALSSGLTESDDPDGXXXXXXXXXXXXXXXXRGMKKRFRTKFSQDQKEKMHLFAEKMGWRMQKQDEAIVQQFCNEIGVGKGVLKVWMHNNKHTLGKKS
A9NWR9______________MFCGSEGEGLMLEQRALGHMMDLGNTQQMPVSMPAPYGLYPNGNGNGNTAIIMVLPHDDSSSNPLNPTNP---RNPMEAAAAPPPTKVLRYRECQRNHAANIGGHALDGCGEFMPAEDDALKCAACGCHRNFHRREVEGDEQPPPTCECCLRKKRGGASSSGPGSPVVPYYPLPLPHGSSAPHMLMALSSGLTESDDPDG-NTNNNSNNNLSHHHHRGMKKRFRTKFSQDQKEKMYMFADKMGWRMQKQDEAIVQQFCNEIGVGKGVLKVWMHNNKHTLGKKS

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
721			70	30	1.0
883		25		75	0.996473
884		75		25	0.996473
912	14		85		0.993533
976		16		83	0.994512
1164	85		14		0.993533
1165	85			14	0.993533
1167	85		14		0.993533
1168	85			14	0.993533
1171	85	14			0.993533
1173	85			14	0.993533
1174		85	14		0.993533
1175	85		14		0.993533
1180			85	14	0.993533
1181		14		85	0.993533
1183	85			14	0.993533
1184		14	85		0.993533
1386		14	85		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
954	965	TAA TAA TAA TAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain