SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2993

Length: 1275 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2993

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PWWP domain-containing protein	-	-	3.0e-23	31%
FL-Next	tr=PWWP domain-containing protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	31%
Blast2go	pwwp domain-containing protein	-	-	3.79378e-24	44%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F4K4D6

Fln msg: your sequence is shorter than subject: 344 - 1072

Fln protein: DNQADSSSKTAKKLQPFSFPDKFGSKQTTNRLSGMSAGDSRESVQQRKKTSRSSDSHKTLEEPMALCMKFPQGFALPSEAQLKARFVRFGQLDVSGTRIYCHTGCARVVFKCASDAGAAYKYATRNSLFGQANVKFRLKQVPQPKEETVLLQSSSESLKKGTVAFQSTFEPLKERKLGSEEVPSPLPDTLKTSIEDVPSSLPDNEIRDLGPLGSSNGPKVEEAGGDCTPTYEVQSAPLVQLKSCLKKPDELGNNSAKESARVTFLLEKELRSDPRDWKNGFSQIENSSDSVSAAGPLPANNSVVAPDLPDVSHQMLYLLKKCSEVVGDVRSSLGFVPYHYYSV*

Protein Length: 345

Fln nts: TGATAATCAGGCAGACAGTTCTTCAAAAACAGCAAAGAAATTACAGCCATTCAGTTTTCCGGATAAGTTTGGCTCAAAACAAACTACAAACAGATTATCTGGCATGTCTGCAGGTGATTCCAGAGAATCAGTTCAACAAAGAAAGAAGACTAGCCGGTCATCTGATTCTCATAAAACTCTTGAGGAGCCGATGGCCCTCTGTATGAAATTTCCACAGGGATTTGCCTTGCCATCGGAAGCACAGTTAAAGGCACGTTTTGTACGTTTTGGGCAATTAGATGTTTCAGGAACCAGAATTTACTGTCATACAGGCTGTGCCCGAGTGGTTTTTAAGTGTGCTTCGGATGCAGGAGCAGCTTATAAATATGCAACTCGAAATAGCTTGTTTGGTCAAGCTAATGTGAAGTTTAGGCTCAAGCAAGTCCCTCAACCGAAAGAAGAAACTGTTCTATTGCAGAGCAGCTCTGAATCACTGAAGAAGGGAACTGTGGCCTTCCAGAGCACTTTTGAACCCCTGAAAGAGAGAAAACTAGGTAGTGAAGAAGTGCCTTCCCCGTTGCCAGATACGTTGAAAACAAGTATTGAAGATGTACCGTCTTCATTGCCAGATAATGAAATACGAGATTTGGGTCCTTTAGGGTCATCTAATGGGCCTAAGGTTGAAGAAGCAGGGGGAGATTGCACTCCAACATACGAGGTTCAGTCAGCACCGTTAGTCCAGTTGAAGTCCTGCTTAAAGAAGCCAGATGAATTGGGGAATAACAGTGCTAAAGAATCTGCACGTGTAACATTCCTATTAGAGAAGGAACTTAGGTCTGACCCACGTGATTGGAAGAATGGGTTCTCTCAAATTGAAAATTCTAGCGATTCTGTATCAGCTGCAGGTCCACTTCCTGCTAACAATAGTGTGGTAGCTCCTGATCTGCCGGATGTTTCACATCAAATGCTATACCTTCTGAAGAAATGTAGTGAGGTAGTCGGTGATGTTAGAAGCTCTCTAGGATTTGTACCATATCATTATTATTCAGTTTAA___ATACATAAGGAGTTTTTTCAAAAAAATTCATATGCGCTTATAGCTGTACTGTATTCTGATTATTTGCTGAGGCAATAGTACGAAGATTCCGAGAAGTTCAATACAACTGGCATTCTCTGACTTCTGAGATGAAACTTGAAAGTTTGCTGAATGAAGGTTCCTGCACTAAAATATTCTTTTAGCAGCAGAAGTTTAAAAGGGTATCATATCCTGGCAGTTGTTTCCATCGTAATAAGCATACC

Fln Alignment:

sp_v1.1_unigene2993___QADSSSKTAKKLQPFSFPDKFGSKQT---TNRLSGMS--------AGDSRESVQQ-----RKKTSRSSDSHKT-----LEEPMALCMKFPQGFALPSEAQLKARFVRFGQLDVSGTRIYCHTGCARVVFKCASDAGAAYKYAT-RNSLFGQANVKFRLKQVPQPKEETVLLQSSSESLKKGTVAFQSTFEPLKERKLGSEEVPSPLPDTLKTSIEDVPSSLPDNEIRDLGPL-------GSSNGPKVEEAGGDCTPTYEVQSAPLVQLKSC-LKKPDELGNNSAKESARVTFLLEKELRSDPRDWKNGFSQIENSSDSVSAAGPLPAN--NSVVAPDLPDVSHQMLYLLKKCSEVVGDVRSSLGFVPYH
F4K4D6______________RTEDPSKAGKKRLSSDRQDEIPSAKKLKKTNQLKSMASEKKIIREAKDSIKPIREPSRVVQAKPARGQTGKKTAPSVKVVEPTMLVMKFPPGTSLPSAALLKARFGRFGLLDQSAIRVFWKSSTCRVVFLYKADAQTAFRYATGNNTLFGNVNVKYFLRDVDAPKAEPREPENTKED-DEPQSQWLDQAPPLHQPTLPPPNV--NLKSCLKKPVDD-PSSSSNNGNGNRAAVRVKFMLGGEENSSKANTEPPQVTMTLNRNSGPSSSSSSVPMEFVSKKFQNVVHHQQLPPSTLPPILPLPPQYTKPQQLPIK-PVDHVEPPMPPSRNFRGPIPAVSAGDISHQMLNLLSKCNEVVANVTGLLGYVPYH

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
970	90			10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain