SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2991

Length: 1042 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2991

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GTP binding protein, putative; K06949 ribosome biogenesis GTPase [EC:3.6.1.-]	-	-	61%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	64%
Blast2go	protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	0.0	61%

Source	KEGGs	Term	Identity
AutoFact	Purine metabolism	00230	61%
AutoFact	Lipopolysaccharide biosynthesis	00540	61%
AutoFact	Folate biosynthesis	00790	61%
AutoFact	Metabolic pathways	01100	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosome biogenesis GTPase RsgA, putative	IPR004881	-	0.0	75%
Blast2go	EngC GTPase	IPR010914	-	0.0	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9IHG1

Fln msg: your sequence is shorter than subject: 260 - 385

Fln protein: RRDLGCHWTWGYETLFCSADTNAGLTAIAEVLENCTSVVVGPSGVGKSSLINALRRGLDIPSDMDIFTGQAGDGSKWFEEQRVGEISVRSGRGKHTTRNVSLLPLPTGGYLTDTPGFNQPSLIKVTKSSLAWMFPEIRQMVNASESGGCAFKDCLHVGEPGCAVKGDWERYPYYLQLLDEIKIREEIQLRLIGTKRESDVRYKVRKMGVKQAEPRLEPKKHRRLSRKRVNQSIMDELTQELEDSQDWEDEIVKGGDVDK*

Protein Length: 261

Fln nts: CGTCGTGACCTTGGCTGTCACTGGACTTGGGGTTATGAGACTCTCTTTTGCAGTGCCGATACAAACGCTGGATTGACAGCTATTGCTGAAGTTTTAGAGAACTGCACATCTGTAGTGGTCGGTCCTAGTGGAGTAGGGAAGTCTAGTTTGATCAATGCATTGCGTCGTGGTCTAGATATTCCTAGTGACATGGACATTTTCACAGGACAGGCAGGGGATGGGAGCAAGTGGTTTGAAGAACAACGTGTTGGAGAAATTTCTGTGAGAAGTGGTCGTGGAAAGCACACCACCCGGAATGTGTCATTACTTCCACTACCAACTGGTGGTTATCTTACAGACACACCTGGTTTCAACCAACCCAGTCTCATAAAAGTCACAAAGAGTTCTCTAGCGTGGATGTTCCCTGAGATCAGGCAGATGGTAAATGCGAGTGAGTCTGGTGGATGTGCCTTCAAAGATTGTCTGCATGTTGGTGAGCCAGGCTGTGCAGTCAAAGGTGATTGGGAAAGGTATCCTTATTATCTTCAGTTGCTTGACGAGATCAAAATACGGGAAGAGATACAGTTAAGGTTGATTGGTACCAAACGAGAAAGTGATGTCAGATACAAGGTCCGTAAAATGGGTGTTAAACAAGCAGAACCAAGACTAGAGCCTAAGAAACATCGCAGACTCTCCCGGAAGAGGGTCAATCAATCAATTATGGATGAACTAACACAGGAGTTAGAAGACAGTCAGGACTGGGAAGACGAAATTGTAAAGGGAGGAGACGTGGACAAATAG___AACAGATAAATTTGTATGGCAGAGACTGTTTAGGTGGAGAAATGTAATACAAAGGGCTGAATAGATTGAGATTTGTATACTGGAATATGTCTTCTCATAAATGCTTACAGAATGTATTCAAAATCAGTGCGGCTTTGAGTTTGACTAGACGAATCATGCAGGTCATTTGTAAATATTGAATGATTGAACAACCCTCTATCCTTGAAGTTGTAAAGTGTCGACTTAGATGGACAATGTATTTTGTTTCTCCATAAATACCATT

Fln Alignment:

sp_v1.1_unigene2991___TWGYETLFCSADTNAGLTAIAEVLENCTXXXXXXXXXXXXXLINALRRGLDIPSDMDIFTGQAGDGSKWFEEQRVGEISVRSGRGKHTTRNVSLLPLPTGGYLTDTPGFNQPSLIKVTKSSLAWMFPEIRQMVNASESGGCAFKDCLHVGEPGCAVKGDWERYPYYLQLLDEIKIREEIQLRLIGTKRESDVRYKVRKMGVKQAEPRLEPKKHRRLSRKRVNQSIMDELTQELEDSQDWEDEIVK
B9IHG1______________SWGYEPLFCSVDSKMGLDTLASVLRDQTTVILGPSGVGKSSLINALRNKPNSHDEADNWFDPIM-GSKWFEDQRVGEVSTRNGRGKHTTRNVSLLPLGGGGYVADTPGFSQPSLLKVTKQSLAQYFPEIRTVLSVNEPAKCTFKDCLHVGEPGCIVKGDWERYPLYFQLLDEIKIREEFQLRTFGTKREDNVRYKAGDMGVQQEEPRLEPKKHRRQSRKRINQSILDELNELANDEDLFDDPVLR

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
482	83			16	0.994512
484		83		16	0.994512
487		16	83		0.994512
488			83	16	0.994512
492		14		85	0.993533
494		85		14	0.993533
495	85	14			0.993533
499	85		14		0.993533
501	85	14			0.993533
502		14	85		0.993533
503			85	14	0.993533
506	85		14		0.993533
507		12		87	0.992554
510			87	12	0.992554
511		12	87		0.992554
513	87	12			0.992554
603		11		88	0.923564
609	88			11	0.923564
610			11	88	0.923564
613	88	11			0.923564
614	88			11	0.923564
615			88	11	0.923564
617			11	88	0.923564
619		88		11	0.923564
623	88	11			0.923564
624	88			11	0.923564
625	88	11			0.923564
626	11			88	0.923564
628		10	90		0.90298
633			10	90	0.90298
635	90	10			0.90298
636	90	10			0.90298
637		90		10	0.90298
638	90			10	0.90298
639	90		10		0.90298
642	90			10	0.90298
644	90	10			0.90298
664	90		10		0.90298
666	90	10			0.90298
668	90			10	0.90298
670		90	10		0.90298
673	90			10	0.90298
675	90			10	0.90298
677	10			90	0.90298
693		80		20	0.999996
923		50		50	1.0
927		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
686	698	TCAA TCAA TCAA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain