SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2965

Length: 488 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2965
ATGGGGGTGCACTATAAGTGGAGCTGGGCCAACTGCTGTAGCAATCACAGACACTGCGGAGAAAGGCAAGGCTATTGCTTTTGCTATGGTGGATATGTTCCAAAAGAAGGGCAAATTGGACGCTACTGCATCTGTTCAGAAGCTTGATAGGATTGGTGCACGGGTCGTTTAACCACGTGCAATAGAAATACTGATCTTATCCTTCCTTTTGCCTTAAAAAACAGTTGAGCGTTATTTCGTAGAGAATTGGGCAGTTTCAATTGTTGGCTTTAGCTGCAATGCATTTATACTTAGGATGCCCTGTATTTTGTTATAATTACAATTGCATCATAAGATGTTATGGGCACTAGCCTTTGCTATGATTTTGAACATGTTTGCACTAACTTGTTTCACTGACCACTTCAGCAATTGTAGACATACATAATTTTTTCTACCCAAATCAATTCGTTTTGGGTAAGCGATGAGCGATTGCGAGTTTCTTCTTATTC

Ace file of the UniGene sp_v1.1_unigene2965

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	homoserine kinase, putative (EC:2.7.1.39); K00872 homoserine kinase [EC:2.7.1.39]	-	-	3.0e-11	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	homoserine kinase	-	-	9.45312e-20	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Homoserine kinase.	EC:2.7.1.39	-	9.45312e-20	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycine, serine and threonine metabolism	00260		9.45312e-20	78%
Blast2go	Metabolic pathways	01100		9.45312e-20	78%

Source	ECs	Term	Type	e value	Identity
AutoFact	Homoserine kinase.	EC:2.7.1.39	-	3.0e-11	62%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Glycine, serine and threonine metabolism	00260		3.0e-11	62%
AutoFact	Metabolic pathways	01100		3.0e-11	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to fungus	GO:0009620	Biological Process	9.45312e-20	78%
Blast2go	response to bacterium	GO:0009617	Biological Process	9.45312e-20	78%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	9.45312e-20	78%
Blast2go	homoserine kinase activity	GO:0004413	Molecular Function	9.45312e-20	78%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	9.45312e-20	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR75

Fln msg: your sequence is shorter than subject: 57 - 166

Fln protein: WGCTISGAGPTAVAITDTAEKGKAIAFAMVDMFQKKGKLDATASVQKLDRIGARVV*

Protein Length: 58

Fln nts: ATGGGGGTGCACTATAAGTGGAGCTGGGCCAACTGCTGTAGCAATCACAGACACTGCGGAGAAAGGCAAGGCTATTGCTTTTGCTATGGTGGATATGTTCCAAAAGAAGGGCAAATTGGACGCTACTGCATCTGTTCAGAAGCTTGATAGGATTGGTGCACGGGTCGTTTAA___CCACGTGCAATAGAAATACTGATCTTATCCTTCCTTTTGCCTTAAAAAACAGTTGAGCGTTATTTCGTAGAGAATTGGGCAGTTTCAATTGTTGGCTTTAGCTGCAATGCATTTATACTTAGGATGCCCTGTATTTTGTTATAATTACAATTGCATCATAAGATGTTATGGGCACTAGCCTTTGCTATGATTTTGAACATGTTTGCACTAACTTGTTTCACTGACCACTTCAGCAATTGTAGACATACATAATTTTTTCTACCCAAATCAATTCGTTTTGGGTAAGCGATGAGCGATTGCGAGTTTCTTCTTATTC

Fln Alignment:

sp_v1.1_unigene2965___WGCTISGAGPTAVAITDTAEKGKAIAFAMVDMFQKKGKLDATASVQKLDRIGARVV
B8LR75______________FGCTISGAGPTAVAITDTAEKGKAIAVAMVDMFQKKGLLEATASVQKLDRTGARVV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
73	16	16		66	0.988813
74	66	16		16	0.988813
76		28	14	57	1.0
77	28		71		1.0
80			14	85	0.993533
82		14		85	0.993533
83	14		85		0.993533
112	11	88			0.923564
120	11		88		0.923564
201		87	12		0.992554
221	80	20			0.995493
359	69		30		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain