SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2919

Length: 1430 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2919

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-amylase, putative n=1 Tax=Ricinus communis RepID=B9S2B5_RICCO	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	at1g69830 t17f3_14	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-amylase.	EC:3.2.1.1	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	84%
Blast2go	Metabolic pathways	01100		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	84%
Blast2go	alpha-amylase activity	GO:0004556	Molecular Function	84%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 13	IPR006046	-	84%
Blast2go	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	84%
Blast2go	Glycosyl hydrolase, family 13, subfamily, catalytic domain	IPR006589	-	84%
Blast2go	Alpha-amylase, C-terminal beta-sheet	IPR012850	-	84%
Blast2go	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	84%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	84%
Blast2go	Alpha amylase	IPR015902	-	84%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUX3

Fln msg: your sequence is shorter than subject: 346 - 448

Fln protein: PEGYMPRDLYNLNSRYGSMDELKDTVTRFHEVGVKVLGDAVLNHRCAQYQNHNGVWNIFGGRLNWDDRAIVSDDAHFQGRGNRSSGDFFHAAPNIDHSQEFVRRDLIDWLQWLRSEIGYDGWRLDFVRGFWGGYVKDYIQGSEPYFAVGEYWDSLSYTYGQMDHDQDAHRQRIIDWINATDGNAGAFDVTTKGILHTVLEKCEYWRLYDKKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPAGKEMQGYAYILTHPGTPAVFYDHLFSNNYNGISSLIAVRKRAGIHCRSVIQIVKAERDVYAAKIDERIFVKIGPGHYQPPNSSKWIVATEGPDYKVWEAL*

Protein Length: 347

Fln nts: CCAGAAGGTTACATGCCACGTGACTTGTATAATCTGAATTCAAGATATGGAAGCATGGATGAATTGAAGGATACTGTCACAAGGTTCCATGAGGTTGGGGTAAAAGTCCTTGGAGATGCTGTCTTAAATCACCGCTGTGCTCAATACCAAAATCACAATGGGGTCTGGAATATTTTTGGTGGCCGTTTGAACTGGGATGATCGTGCAATTGTGTCTGATGATGCACATTTTCAGGGCAGGGGCAACAGAAGTAGTGGTGACTTTTTCCATGCAGCTCCAAATATTGACCATTCACAAGAGTTTGTGCGACGCGACTTGATTGATTGGCTGCAGTGGCTAAGGAGTGAAATTGGATATGATGGATGGAGATTAGATTTTGTGAGAGGATTTTGGGGAGGTTATGTGAAAGATTATATACAGGGAAGTGAACCATACTTTGCTGTCGGGGAGTATTGGGATTCACTTTCATACACATATGGTCAAATGGACCATGATCAAGATGCCCATCGGCAACGTATTATTGACTGGATAAATGCCACTGATGGAAATGCGGGAGCTTTTGATGTCACTACAAAGGGTATTCTTCATACGGTGCTGGAAAAATGTGAGTACTGGCGTTTATATGATAAGAAAGGCAAACCTCCCGGGGTGGTTGGATGGTGGCCATCACGAGCAGTTACATTTATTGAGAATCATGATACTGGCTCAACTCAGGGTCACTGGAGATTTCCTGCTGGGAAAGAAATGCAAGGTTATGCATATATTTTGACGCATCCCGGAACTCCTGCTGTTTTCTATGATCATTTGTTTTCAAATAATTATAATGGGATTTCCTCTCTCATTGCTGTAAGAAAGCGTGCAGGAATCCATTGCCGCAGTGTGATCCAGATAGTGAAAGCAGAGAGAGATGTGTATGCAGCAAAGATTGATGAACGAATTTTTGTGAAGATTGGACCTGGGCACTATCAACCCCCAAATTCCTCTAAATGGATCGTGGCGACTGAGGGCCCAGACTACAAGGTTTGGGAGGCATTATGA___GAATTTATTTGTTTTTATGCATGAGGTTCTTTGTCAAGAATGCAAATCGATTATTTTATTCAAAACTGATAAAAAAATGGCATGTATTATAGTTGATATATTATTACTGGTGACGACATGTCAAGCTTCCATTAGTTATCCTAGATGTATTGTGGCAAGGGCAAAGATACAAGGTTTTGGAGGCATTATGATAATCCTTAACGTATACATTTTACAATGAAAATACAAGCCATATGTTTCGCCCAAAATTTACATCTTCTGTAAAACAGGATGTATTATTGGGAGTGTAATATCATTAGGTTCTAGTTATACTCTTATGTATTCACTTCTACTTTTTGTGTTGTACAATTTCTATCTAAAATAAAAATCCTCAATTAGTAAATTTTTTCTCC

Fln Alignment:

sp_v1.1_unigene2919___PEGYMPRDLYNLNS-RYGSMDELKDTVTRFHEVGVKVLGDAVLNHRCAQYQNHNGVWNIF-----GGRLNWDDRAIVSDDAHFQ-GRGNRSSGDFFHAAPNIDHSQEFVRRDLIDWLQWLRSEIGYDGWRLDFVRGFWGGYVKDYIQGSEPYFAVGEYWDSLSYTYGQMDHDQDAHRQRIIDWINATDGNAGAFDVTTKGILHTVLEKCEYWRLYDKKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPAGKEMQGYAYILTHPGTPAVFYDHLFSNNY-NGISSLIAVRKRAGIHCRSVIQIVKAERDVYAAKIDERIFVKIGP----GHYQPPNSSKWIVATEGPDYKVWE
A9NUX3______________PEGYLPQRLYDLNSSKYGSEQELRNAVDAFHQKGIGCVGDMVINHRSGTKQDDKGMWCVFEGGKGDGRLDWGPWAVTVNDKPFACGSGQADTGGDYAAAPDIDHTNPKIQQDLSEWMNWLKSNVGFDGWRFDFAKGYAGNLLAVYLKNTSPKFAVGEVWDDMSYSDGRLAYDQGAHRQRLVDWVHSTGDGAAAFDFTTKGILQEAVKSNELWRLKDSNGKPAGMIGVLPQKAVTFIDNHDTGSTQNIWPFPSDKLLQGYAYILTHPGIPTIFYDHFVDGNLKKEIQNLSAIRKRNNINANSNCRIITAESDLYMAAIDEKIVVKIGSRYDVGNLAPP-SPEFRVVASGNGYCVWE

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
31	66		33		0.997452
32	66		33		0.997452
361		12	87		0.992554
363	87			12	0.992554
364		14		85	0.993533
368		20	80		0.995493
369	80	20			0.995493
372	80		20		0.995493
374	80	20			0.995493
376			20	80	0.995493
378		20		80	0.995493
379	20		80		0.995493
380		20		80	0.995493
381			80	20	0.995493
382	80	20			0.995493
552		66		33	0.997452
713	85			14	0.993533
714		85	14		0.993533
715			14	85	0.993533
716		85	14		0.993533
1119	78			7	0.999974
1288	46	53			1.0
1350		12		87	0.992554
1352	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain