SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2908

Length: 2116 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene2908
CGTCGTGACCTTGGCTGTCACTCATGTTATTTGTTTTGGTATTAGTCTGAAGTTTTTTTTATAGATCTTTCTAGCCAGAATAGTATGAGATTTTGTGTAAATGATTTTGAGAATTCATGAGATTCAAGATGTATCAAAGATTTGAAGATTTACATTCGATTGTGATGCCGTTTCTGATCAAGTCCTAAATCAATTGGGTTTTCTGTGGTTATGTGCTATATTGAGGAATATCTATATTGATCCAAACATGGGGTTTAATTCATCATTAGACCACTTTGACAGGCTCCCAGATTCACTCGTGTTGCTTATATTCAACAAATTTGATGATATTAAGGTTTTAGGACGATGCCGTGCAGTTTCAAAGAGGTTCTCTAGTATAGTCCCGCAAGTGCAGACCGTGGTAGTTAAGGTAGACTGTGTTATATCCAGTGAAGAAACCAACCTTAACAATAATGGTAAAAGCAAAGGGATATGGAGTTATTTGATGAGAATCATGATGAGTAGCATTGTTAGGCCATGGCAGACATTGCAGCATGTTTTGGGCCCGAAGAAATCCATGGTTGCAGAGGTCTCCCATCATTCTCCCGGTGAGGTTTTAAAGAATTTCAAGGAAGTGCAGAATCTGAGGATTGAATTGCCCGGTGGAGAACTGGGCATTGAAGATGGTTTGCTGTTGAAGTGGAAAGCCGTTTTTGGGAGTACTTTGGAGAGTTGTGTTATCCTCGGGGCCTCTTCGGTCTTCAATCCCGCGAAGGATAAGAGAGATGGTAACTGTGATTTAGAGAAGTCATGGCTTCTTCAAGAAAATGGGGCTTCAGAGGATGAAGACACTGGGAACATTCCTGAATCATTTTACACCAATGGGGCCCTGAAACTGAGAGTGGTTTGGACCATTAGCTCCCTTATTGCAGCCTCTGCAAGGCATTATCTTCTTCAAAATATCATATCTGAGCATCCCACCTTGGAAAATCTTATTCTTACTGATTCAGATCAGCAAGGAGTTCTATGCATGAACAGAAGTCAATTGCAAGAATTTCGTGATAAACCTCTTGCAGCCTCTGCTTCATCTAACAGAACCCAAGTTCCTGCACTAAATATGAAGCTTTGGTATGCCCCATGTCTGGAGCTCCCATGTGGAATGGTGTTGAAGGGTGCGACACTGGTCTCAATTCGCCCTTGTGAGTACCCAATATGCAAGGAAACTGATGGATTTTTGGCTGGAGCTTTCGAAGGACCATTCAAGACTGCAGCTAGCCTGCTTTCAAAGCGGAGGACATATCTTCTGGAAATGAATTCATTCTAGGCCTCTGAAGTTTGAATATAGGCAGTTAGCTCAACTGTTACAGGATTCTCTATGATTTATCCCTAGTTTCTATACATTCAAGAAGTCTGTGAATGGAATATCAGTTGATATCAGAGTAATTTGATCCCGCCTTTGAATTTGGTGCTTCCATAAATTGTCCAAATGGGTAAAAGCTGGCAACCATTCTGATTATCAATGAGCTGGAGTGGGGATGCTGTTACCACTTTCCCTTGCTCGACAATTTGTCCAGATCCACTACAATCTTTTCAAAAGTTCATCAGAGTACTTTTCAGCCCTGCATTTCCTCTTCGTGTCACTGATATGCCAGTGTAAGAACTCTTGATGACCATTTGATTTGTTGCGAGGATGATAAGAGTCAGGAAATTGTTATTTGTAGAGAGACCATCATTTCTAATTTCTGATAAAGTTTTATCACGTGAAGGCTATGTACAAGTTGGGTTGAAAAATTCCAACATCTCTCATTGCCATGCAAGGATAAAACTATACAGGACAAGTGAAAGAATATGTCCTCAGCAAGCATAACCATAGATTACCTTTAATGTTTTGGAGTATTGGAGGACTACTGTTCACTGAACATCCCTATTTCAATAAGTACCTTCTCTTCATCTCAAAAAGGACTTGTAAATTTCAATAAAAATCTGTAGTTGTAAAGCATAATAAAAAGCTGTCCACTGATTTCAGGTTGTGGGAGCTAAGTTGCTGCTATTCAGCGGTGCCAAGCAATAAATAAATACAAAATACAAACTACAAATTGACAAAACAAATTTGTAGATATCTCTTGTTCTGCTTGTT

Ace file of the UniGene sp_v1.1_unigene2908 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box family protein	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	f-box family protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	heat acclimation	GO:0010286	Biological Process	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	F-box domain, cyclin-like	IPR001810	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW74

Fln msg:

Fln protein: MGFNSSLDHFDRLPDSLVLLIFNKFDDIKVLGRCRAVSKRFSSIVPQVQTVVVKVDCVISSEETNLNNNGKSKGIWSYLMRIMMSSIVRPWQTLQHVLGPKKSMVAEVSHHSPGEVLKNFKEVQNLRIELPGGELGIEDGLLLKWKAVFGSTLESCVILGASSVFNPAKDKRDGNCDLEKSWLLQENGASEDEDTGNIPESFYTNGALKLRVVWTISSLIAASARHYLLQNIISEHPTLENLILTDSDQQGVLCMNRSQLQEFRDKPLAASASSNRTQVPALNMKLWYAPCLELPCGMVLKGATLVSIRPCEYPICKETDGFLAGAFEGPFKTAASLLSKRRTYLLEMNSF*

Protein Length: 353

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTATTTGTTTTGGTATTAGTCTGAAGTTTTTTTTATAGATCTTTCTAGCCAGAATAGTATGAGATTTTGTGTAAATGATTTTGAGAATTCATGAGATTCAAGATGTATCAAAGATTTGAAGATTTACATTCGATTGTGATGCCGTTTCTGATCAAGTCCTAAATCAATTGGGTTTTCTGTGGTTATGTGCTATATTGAGGAATATCTATATTGATCCAAAC_-_ATGGGGTTTAATTCATCATTAGACCACTTTGACAGGCTCCCAGATTCACTCGTGTTGCTTATATTCAACAAATTTGATGATATTAAGGTTTTAGGACGATGCCGTGCAGTTTCAAAGAGGTTCTCTAGTATAGTCCCGCAAGTGCAGACCGTGGTAGTTAAGGTAGACTGTGTTATATCCAGTGAAGAAACCAACCTTAACAATAATGGTAAAAGCAAAGGGATATGGAGTTATTTGATGAGAATCATGATGAGTAGCATTGTTAGGCCATGGCAGACATTGCAGCATGTTTTGGGCCCGAAGAAATCCATGGTTGCAGAGGTCTCCCATCATTCTCCCGGTGAGGTTTTAAAGAATTTCAAGGAAGTGCAGAATCTGAGGATTGAATTGCCCGGTGGAGAACTGGGCATTGAAGATGGTTTGCTGTTGAAGTGGAAAGCCGTTTTTGGGAGTACTTTGGAGAGTTGTGTTATCCTCGGGGCCTCTTCGGTCTTCAATCCCGCGAAGGATAAGAGAGATGGTAACTGTGATTTAGAGAAGTCATGGCTTCTTCAAGAAAATGGGGCTTCAGAGGATGAAGACACTGGGAACATTCCTGAATCATTTTACACCAATGGGGCCCTGAAACTGAGAGTGGTTTGGACCATTAGCTCCCTTATTGCAGCCTCTGCAAGGCATTATCTTCTTCAAAATATCATATCTGAGCATCCCACCTTGGAAAATCTTATTCTTACTGATTCAGATCAGCAAGGAGTTCTATGCATGAACAGAAGTCAATTGCAAGAATTTCGTGATAAACCTCTTGCAGCCTCTGCTTCATCTAACAGAACCCAAGTTCCTGCACTAAATATGAAGCTTTGGTATGCCCCATGTCTGGAGCTCCCATGTGGAATGGTGTTGAAGGGTGCGACACTGGTCTCAATTCGCCCTTGTGAGTACCCAATATGCAAGGAAACTGATGGATTTTTGGCTGGAGCTTTCGAAGGACCATTCAAGACTGCAGCTAGCCTGCTTTCAAAGCGGAGGACATATCTTCTGGAAATGAATTCATTCTAG___GCCTCTGAAGTTTGAATATAGGCAGTTAGCTCAACTGTTACAGGATTCTCTATGATTTATCCCTAGTTTCTATACATTCAAGAAGTCTGTGAATGGAATATCAGTTGATATCAGAGTAATTTGATCCCGCCTTTGAATTTGGTGCTTCCATAAATTGTCCAAATGGGTAAAAGCTGGCAACCATTCTGATTATCAATGAGCTGGAGTGGGGATGCTGTTACCACTTTCCCTTGCTCGACAATTTGTCCAGATCCACTACAATCTTTTCAAAAGTTCATCAGAGTACTTTTCAGCCCTGCATTTCCTCTTCGTGTCACTGATATGCCAGTGTAAGAACTCTTGATGACCATTTGATTTGTTGCGAGGATGATAAGAGTCAGGAAATTGTTATTTGTAGAGAGACCATCATTTCTAATTTCTGATAAAGTTTTATCACGTGAAGGCTATGTACAAGTTGGGTTGAAAAATTCCAACATCTCTCATTGCCATGCAAGGATAAAACTATACAGGACAAGTGAAAGAATATGTCCTCAGCAAGCATAACCATAGATTACCTTTAATGTTTTGGAGTATTGGAGGACTACTGTTCACTGAACATCCCTATTTCAATAAGTACCTTCTCTTCATCTCAAAAAGGACTTGTAAATTTCAATAAAAATCTGTAGTTGTAAAGCATAATAAAAAGCTGTCCACTGATTTCAGGTTGTGGGAGCTAAGTTGCTGCTATTCAGCGGTGCCAAGCAATAAATAAATACAAAATACAAACTACAAATTGACAAAACAAATTTGTAGATATCTCTTGTTCTGCTTGTT

Fln Alignment:

sp_v1.1_unigene2908___DHFDRLPDSLVLLIFNKFDDIKVLGRCRAVSKRFSSIXXXXXXXXXXXXXVISSEETNLNNNGKSKGIWSYLMRIMMSSIVRPWQTLQHVLGPKKSMVAEVSHHSPGEVLKNFKEVQNXXXXXXXXXXXXXXXXXLKWKAVFGSTLESCVILGASSVFNPAKDKRDGNCDLEKSWLLQENGASEDEDTGNIPESFYTNGALKLRVVWTISSLIAASARHYLLQNIISEHPTLENLILTDSDQQGVLCMNRSQLQEFRDKPLAASASSNRTQVPALNMKLWYAPCLELPCGMVLKGATLVSIRPCEYPICKETDGFLAGAFEGPFKTAASLLSKRRTYLLEMNSF
A9NW74______________DHFDRLPNSLVLVIFNKLGDIKALGRCSAVSKRFNCLVPQVEDVVVKVDCVISSEESG-SLSGRSRGFIGLFVKLVIGSIVKPLQALQQILGTKKVVLAEVSHHSPGEVLKNFKEIQNLRIELPGGELGVEDGVLLRWRAEFGSTLESCVILGSTSYFCEKNSRKNPRSAIQRTEEFNEGL----DDNGNIPESFYTDGGLKLRVVWTISSLIAASARHYLLQQIISDHPTLQNLVLTDADGQGMLCMGKAQLREFRDKPLAASATASRTQVPALNMKLWYAPYLELPEGGGMEGATLVSIRPSDRPIKKDAEAFLAGAFDEPFGAAAKEMVKKRTYLLEMNSF

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1807	75		25		0.996473
1853	75	25			0.996473
1923		25		75	0.996473
2034	80			20	0.995493
2036	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain