SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2879

Length: 3374 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2879
GGGAAAGGGACGGCGAGGAAGAGGAGGTGGAGGTGGGGGAGGACTAGTCCCTATTCACCTCCTGCAGGGCCAGTCAGGCCTTCATTTCCCGATCTGCCCCAAGCTTTTCAGCCCCTTTCAGCTACCGCTGCTCCTTACCAACAGCAGCAGGTCGTAGCAGGAGAGCAGGCTGGAACCGGCATGCAAGTCCGAGCATTCGTTCCAGAATTCCTGATGCCTGCCGAATCTAGCGGTCCTCCTGCTGAATCTAGTGCTCTTCCTGCTGCGGAAGCACCAGGCCCCGTGGAGGAGCAATTTCAAAGGATGACGTTGCAAGCCACTGCAGCTGACGTGGCTGGCACTTCTCAAGTTGTTGCTGCACCTCCAATGTCTAGTAAAGGGGTGCGGTTTCCAATGCGTCCAGGCATGGGGAAATATGGCAATAAGTGCATTGTTAAGGCAAACCATTTCTTTGCCCAGCTTCCAGATAAAGATCTCCATCAGTATGATGTTTCCATCACACCCGAGGTCACTTCTCGTGGTGTCAATAGGGCGGTAATGGAGCAGCTGGTCAAATTATATCGAGAGTCTCATTTGGGCAGGAGGCTACCTGCATATGATGGTCGCAAGAGCCTGTACACTGCCGGGGCACTGCCCTTTACCTCCAAAGAATTTAACATCAATCTTGTTGATGAGGATGATGGTATGGGTGGCCAAAGAAGAGAACGGAACTTCAAGGTTGTTATCAAGTTTGCAGCTCGGGCTGATCTACACCATTTAGGTCAATTTTTATCAGGGAGGCAGGCAGATGCACCCCAGGAAGCTCTACAGGTTCTCGATATTGTTCTGCGCGAATTGCCGACACATAGGTATTCGCCGGTTGGGAGATCCTTCTATTCCCCTGATTTAGGAACGAGGAAACAACTTGGGGAGGGCTTAGAGAGCTGGCGTGGATTTTACCAGAGCATCAGACCCACTCAAATGGGTTTGTCGCTCAACATTGATATGTCCTCAACCGCTTTCATTGAACCGTTGCCTGTAATTGATTTTGTGGCACAACTTTTGAATAGGGATATGGTATCAAGGCCATTGTCTGATGCTGATCGTATAAAGATTAAAAAGGCACTGAGGGGTGTTAAAGTTGAGGTGACACACAGGGCGAACATGCGTAGGAAATACCGCATTTCTGGATTAACGTCACAACCAACGAGGGAGCTTACGTTTCCAGTTGATGAGAGGGGAACAATGAAATCAGTAGTAGAGTATTTCCAAGAGACCTATGGGTTTACGATACAGCATACCTAGCTTGCCTTGTCTTCAAGTTGGAAACCAGCAAAGGCCAAACTATTTGCCCATGGAGGTTTGCAAAATAGTCGAGGGCCAACGCTACTCTAAACGATTGAATGAACGACAAATCACTGCCCTGTTGAAAGTAACATGCCAGCGTCCTAAAGACCGAGAGATGGATATCTTACAGACTGTTTATCACAATGCATATCATGAGGATCCTTATGCAAAGGAATTTGGTATCAAAATTAGTGACAGACTAGCCTCCGTTGAAGCTCGGATTTTGCCTCCACCTTGGCTGAAGTATCATGATACTGGTAGGGAGAAAGATTGTTTGCCGCAGGTTGGCCAATGGAATATGATGAATAAGAAAATGGTGAACGGAGGAACTGTAAACTCCTGGGCCTGTGTCAACTTTTCTCGAAGTGTCCAGGACAGTGTTGCTCGTGGTTTTTGTCATGAATTGGCACAGATGTGTCAGATATCTGGCATGATATTTAATCCAGAACCTATAATTCCTATCCATGGGGCACGACCTGATCAAGTTGAGAGAGCACTGAAGACCGTGTACAAAGATGTTACTAACAAACTCAAGGGAAAGGAACTGGAACTTCTTGTTGTTATTTTGCCTGATAACAATGGTTCTTTGTATGGTGACCTGAAGCGTATATGTGAGACTGACCTTGGTTTGGTTTCCCAGTGCTGTCTGACGAAACATGTCTTTAAAATGAGCAAACAATATCTGGCAAATGTTGCCCTTAAAATTAATGTAAAGGTTGGTGGAAGAAACACTGTCTTAGTTGACGCACTGTCAAGGAGGATACCTTTGGTCAGCGACAAACCTACAATAATCTTTGGAGCAGATGTTACCCATCCACACCCTGGAGAAGATTCGAGCCCGTCAATAGCTGCTGTTGTAGCGTCTCAAGATTGGCCGGAAGTCACTAAATATGCAGGCTTAGTTTGTGCTCAGGCACATCGTCAGGAACTCATTCAGGATCTTTACAAAGTCTGGCAGGATCCTGTGCGAGGGTCTGCAACTGGAGGCATGATAAAGGAATTGTTAATTTCCTTCAGAAGGAATACAGGACACAAGCCGGAGCGTATAATATTTTACAGAGATGGAGTAAGCGAGGGTCAGTTTTATCAAGTTCTATTGTATGAGTTAGATGCTATTCGAAAGGCCTGTGCATCTCTTGAACCAAATTATCAACCTCCCGTTACTTTTGTGGTGGTTCAAAAACGTCACCATACCAGACTCTTTGCAAACAACCATCAAGATCGAAATGCGACAGACAGGAGTGGAAACATATTGCCAGGCACTGTAGTGGATTCCAAAATTTGCCATCCAACAGAATTTGACTTTTACCTCTGCAGCCATGCTGGTATTCAGGGAACTAGTAGGCCTGCCCATTATCATGTTCTTTGGGATGAAAACAAATTCACAGCTGATGGATTGCAGTCCTTAACCAACAATCTCTGTTACACATATGCGAGGTGCACACGGTCAGTTTCTATAGTACCCCCAGCGTATTATGCCCATCTGGCTGCATTTCGGGCTCGGTTTTATATGGAGCCAGAAACATCAGATAGTGGTTCCTTATCTAGTGGTGTTCCTGGTAGTCGCATGACTGCAGCTAGTTCAGGTTCTCGGAGCACTCGTGTACCTGCCGGAACTAGTGTTCGGCCCTTGCCAGCTCTGAAAGAAAATGTCAAGAGAGTTATGTTTTACTGTTAGATTTGATACATAGATGTTTGACATTTTTAAGTTCTATATATGCCATCCCTTTGTTGGGTTAAGTAGGCATTGAGTGACAGGCCAGGTGCATCACTACGATGCTTTCAAATTGCAAAGTTCTAGATTTCCAAAACTTAAGATCACACTCAAATCACTTCCTTTTCACCTCTTGTTCTGTTTGACATTTTTTAATTGGCTGCGGCCATTTAGATTGAAGAGACAATTAAATTTTAGTTTGAACATTTGTGTTGTCAAGTGTCAGGTTTTCTTGAATTACAACTGGGCAATCAGTTCTTGTTCAAGTGGGTGTAACCTTTCATCATGGTGTGAATTAATGGAGTTATTATATGAAACAAGTTAAAATTCGTTA

Ace file of the UniGene sp_v1.1_unigene2879

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Argonaute protein group n=2 Tax=core eudicotyledons RepID=B9N365_POPTR	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	argonaute protein group	-	-	91%

Source	InterPros	Term	Type	Identity
Blast2go	Argonaute/Dicer protein, PAZ	IPR003100	-	91%
Blast2go	Stem cell self-renewal protein Piwi	IPR003165	-	91%
Blast2go	Ribonuclease H-like domain	IPR012337	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACK3

Fln msg: your sequence is longer than subject: 582 - 229

Fln protein: MGLRYSIPSLPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREMDILQTVYHNAYHEDPYAKEFGIKISDRLASVEARILPPPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNSWACVNFSRSVQDSVARGFCHELAQMCQISGMIFNPEPIIPIHGARPDQVERALKTVYKDVTNKLKGKELELLVVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDKPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKVWQDPVRGSATGGMIKELLISFRRNTGHKPERIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSGVPGSRMTAASSGSRSTRVPAGTSVRPLPALKENVKRVMFYC*

Protein Length: 583

Fln nts: GGGAAAGGGACGGCGAGGAAGAGGAGGTGGAGGTGGGGGAGGACTAGTCCCTATTCACCTCCTGCAGGGCCAGTCAGGCCTTCATTTCCCGATCTGCCCCAAGCTTTTCAGCCCCTTTCAGCTACCGCTGCTCCTTACCAACAGCAGCAGGTCGTAGCAGGAGAGCAGGCTGGAACCGGCATGCAAGTCCGAGCATTCGTTCCAGAATTCCTGATGCCTGCCGAATCTAGCGGTCCTCCTGCTGAATCTAGTGCTCTTCCTGCTGCGGAAGCACCAGGCCCCGTGGAGGAGCAATTTCAAAGGATGACGTTGCAAGCCACTGCAGCTGACGTGGCTGGCACTTCTCAAGTTGTTGCTGCACCTCCAATGTCTAGTAAAGGGGTGCGGTTTCCAATGCGTCCAGGCATGGGGAAATATGGCAATAAGTGCATTGTTAAGGCAAACCATTTCTTTGCCCAGCTTCCAGATAAAGATCTCCATCAGTATGATGTTTCCATCACACCCGAGGTCACTTCTCGTGGTGTCAATAGGGCGGTAATGGAGCAGCTGGTCAAATTATATCGAGAGTCTCATTTGGGCAGGAGGCTACCTGCATATGATGGTCGCAAGAGCCTGTACACTGCCGGGGCACTGCCCTTTACCTCCAAAGAATTTAACATCAATCTTGTTGATGAGGATGATGGTATGGGTGGCCAAAGAAGAGAACGGAACTTCAAGGTTGTTATCAAGTTTGCAGCTCGGGCTGATCTACACCATTTAGGTCAATTTTTATCAGGGAGGCAGGCAGATGCACCCCAGGAAGCTCTACAGGTTCTCGATATTGTTCTGCGCGAATTGCCGACACATAGGTATTCGCCGGTTGGGAGATCCTTCTATTCCCCTGATTTAGGAACGAGGAAACAACTTGGGGAGGGCTTAGAGAGCTGGCGTGGATTTTACCAGAGCATCAGACCCACTCAAATGGGTTTGTCGCTCAACATTGATATGTCCTCAACCGCTTTCATTGAACCGTTGCCTGTAATTGATTTTGTGGCACAACTTTTGAATAGGGATATGGTATCAAGGCCATTGTCTGATGCTGATCGTATAAAGATTAAAAAGGCACTGAGGGGTGTTAAAGTTGAGGTGACACACAGGGCGAACATGCGTAGGAAATACCGCATTTCTGGATTAACGTCACAACCAACGAGGGAGCTTACGTTTCCAGTTGATGAGAGGGGAACAATGAAATCAGTAGTAGAGTATTTCCAAGAGACCT_-_ATGGGTTTACGATACAGCATACCTAGCTTGCCTTGTCTTCAAGTTGGAAACCAGCAAAGGCCAAACTATTTGCCCATGGAGGTTTGCAAAATAGTCGAGGGCCAACGCTACTCTAAACGATTGAATGAACGACAAATCACTGCCCTGTTGAAAGTAACATGCCAGCGTCCTAAAGACCGAGAGATGGATATCTTACAGACTGTTTATCACAATGCATATCATGAGGATCCTTATGCAAAGGAATTTGGTATCAAAATTAGTGACAGACTAGCCTCCGTTGAAGCTCGGATTTTGCCTCCACCTTGGCTGAAGTATCATGATACTGGTAGGGAGAAAGATTGTTTGCCGCAGGTTGGCCAATGGAATATGATGAATAAGAAAATGGTGAACGGAGGAACTGTAAACTCCTGGGCCTGTGTCAACTTTTCTCGAAGTGTCCAGGACAGTGTTGCTCGTGGTTTTTGTCATGAATTGGCACAGATGTGTCAGATATCTGGCATGATATTTAATCCAGAACCTATAATTCCTATCCATGGGGCACGACCTGATCAAGTTGAGAGAGCACTGAAGACCGTGTACAAAGATGTTACTAACAAACTCAAGGGAAAGGAACTGGAACTTCTTGTTGTTATTTTGCCTGATAACAATGGTTCTTTGTATGGTGACCTGAAGCGTATATGTGAGACTGACCTTGGTTTGGTTTCCCAGTGCTGTCTGACGAAACATGTCTTTAAAATGAGCAAACAATATCTGGCAAATGTTGCCCTTAAAATTAATGTAAAGGTTGGTGGAAGAAACACTGTCTTAGTTGACGCACTGTCAAGGAGGATACCTTTGGTCAGCGACAAACCTACAATAATCTTTGGAGCAGATGTTACCCATCCACACCCTGGAGAAGATTCGAGCCCGTCAATAGCTGCTGTTGTAGCGTCTCAAGATTGGCCGGAAGTCACTAAATATGCAGGCTTAGTTTGTGCTCAGGCACATCGTCAGGAACTCATTCAGGATCTTTACAAAGTCTGGCAGGATCCTGTGCGAGGGTCTGCAACTGGAGGCATGATAAAGGAATTGTTAATTTCCTTCAGAAGGAATACAGGACACAAGCCGGAGCGTATAATATTTTACAGAGATGGAGTAAGCGAGGGTCAGTTTTATCAAGTTCTATTGTATGAGTTAGATGCTATTCGAAAGGCCTGTGCATCTCTTGAACCAAATTATCAACCTCCCGTTACTTTTGTGGTGGTTCAAAAACGTCACCATACCAGACTCTTTGCAAACAACCATCAAGATCGAAATGCGACAGACAGGAGTGGAAACATATTGCCAGGCACTGTAGTGGATTCCAAAATTTGCCATCCAACAGAATTTGACTTTTACCTCTGCAGCCATGCTGGTATTCAGGGAACTAGTAGGCCTGCCCATTATCATGTTCTTTGGGATGAAAACAAATTCACAGCTGATGGATTGCAGTCCTTAACCAACAATCTCTGTTACACATATGCGAGGTGCACACGGTCAGTTTCTATAGTACCCCCAGCGTATTATGCCCATCTGGCTGCATTTCGGGCTCGGTTTTATATGGAGCCAGAAACATCAGATAGTGGTTCCTTATCTAGTGGTGTTCCTGGTAGTCGCATGACTGCAGCTAGTTCAGGTTCTCGGAGCACTCGTGTACCTGCCGGAACTAGTGTTCGGCCCTTGCCAGCTCTGAAAGAAAATGTCAAGAGAGTTATGTTTTACTGTTAG___ATTTGATACATAGATGTTTGACATTTTTAAGTTCTATATATGCCATCCCTTTGTTGGGTTAAGTAGGCATTGAGTGACAGGCCAGGTGCATCACTACGATGCTTTCAAATTGCAAAGTTCTAGATTTCCAAAACTTAAGATCACACTCAAATCACTTCCTTTTCACCTCTTGTTCTGTTTGACATTTTTTAATTGGCTGCGGCCATTTAGATTGAAGAGACAATTAAATTTTAGTTTGAACATTTGTGTTGTCAAGTGTCAGGTTTTCTTGAATTACAACTGGGCAATCAGTTCTTGTTCAAGTGGGTGTAACCTTTCATCATGGTGTGAATTAATGGAGTTATTATATGAAACAAGTTAAAATTCGTTA

Fln Alignment:

sp_v1.1_unigene2879___MIKELLISFRRNTGHKPERIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSGVPGSRMTAASSGSRSTRVPAGTSVRPLPALKENVKRVMFYC
D5ACK3______________MIKELLISFRRNTGHKPERIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSGVPGSRMTAASSGSRSTRVPAGTTVRPLPALKENVKRVMFYC

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
244	33		66		1.0
603			13	86	0.999973
1504	20		80		0.995493
1537		85		14	0.993533
1594	12		87		0.992554
1838		11		88	0.923564
1863	90		10		0.90298
2400			89	10	0.999919
3200	3			86	1.0
3249	76		23		1.0
3250	3	6		90	0.997952

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain