SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2873

Length: 2066 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2873
AAGCAAGTGGTATCAACGCAGAGTACATGGGGATCTCTTTTGGTTGTGTTTTACAAATATTGAATTTGTGTGCGAAAGCAATAGCGTAGGGGAAAGCTATATACCCAGCCACCCAACGTCGTGACCTTGGCTGTCATTGCTGGCCATGGAGACCCTCATTGGCAGAAAATACAGTCTCGGACGCAAGATCGGCAGCGGTGCCTTTGGCGAGATATTTATCGGAACCGATGTTCGGACAAAGGAGGAAGTGGCTATTAAGATGGAGAAAGTGAAAACAAATCACCCACAGTTGATATATGAATCTAAAGTGTATAGACATCTTTATGGAGGAGTTGGTATTCCAAACATCAGATGGTTTGGGACAGAAGGAGATTATAATATTATAGTTCTAGATTTGCTGGGTCCCAGCCTAGAAGATTTATTTCTGTTTTGTGGGCGTAGATTCTCGCTGAAGACTGTATTAATGTTAGCTGATCAGCTGATTGAGAGGGTGGAATATATACATTCAAAATCATTTATGCACAGAGACATGAAGCCTGATAATTTTCTTATGGGGCTTGGTCAGAAAGCAAATCAGGTCTACGTGATTGATTTCGGTCTTGCAAAGAAGTTCCAAGACCCAGTGACCCTACGTCATATTCACTTCAGGGCAAACAAAAGTTTAACTGGAACTGCACGCTATGCAAGTGTCAATACTCACAATGGCATCGAGCAAAGCCGAAGGGATGATATTGAGTCTCTTGGATATGTTCTCATGTACTTCTTAAGGGGAAGCCTTCCTTGGCAAGGTCTGAAGGCAGCAAATAAGAAGCAAAAGTATGATAAAATATGTCAGAAGAAGATAGCTACCCCTATTGAATCATTATGCAAGTCCCATCCGACAGAGTTTGCATTGTACTTTCAACATTGCAAGTCTCTGGCTTTTGATGACACGCCAGATTACGTATATTTGAAGGGCTTGTTCCAAGATTTGTTTAAACGTGAAGGTTTCAAGTATGATTATGTGTTCGATTGGACCATCCTAAAATATCAACAAGCACAAAGTTCCGGAGCTGTACCACGGTTGCCTCCTGCACAGGGAGGTACAAGCAGTGGAGCAACACCATCGGCTGCTGACATGGTTGCAGGAGTAAAAGATGGCCATGATGCAACTGAAACTGCAGAACCTGCAGGAGAAGCTCTCAAAGTAGGTTTTGGAGGTGGCCCACATTTGGATTCAACAAAGCACAAAGCCAGTAATGTTCATGCTACTAAAGATGGAGATCTCCCTGATAAAGAGCTTATCCAACCACGGATATATACACCACGGATATACAACCCGCGGAGACCTGTGATTTCCACTGACAGACCAGTTATATCAACAGAAGCAGCTGATGCAAAACGTGTATTTGGTGGCAAGATTGGTGCAACGAACTTTCACGCTCCAACAACAGATCGTCTTTCAAAAGCAGATCGTCTTTCTTCATCAGATTCCAAGAGAATGGTACAAGAGGCCCCATTGCAAAGTTCTGGCAGAAATCATGAAGCGCGTTCTCAAGTCCTCATGAAGCGCTTTTAGAGTTTTGGAGATGCCCCTGGACATTGAAAATATCTGGTTTCATGATGTCCTCTGTATGGTGGTTGCAAATCAGTGGATCCAAGACACTGCTGAAATGCAACCTATTTGTGATCCTTCCCGTTGATCTTTGTATCTTAGTGTATTGCCAACTTTCAAAAACCAATCTGTGAAACCCTGAGAGATTTCCTGTCATTGTTTACATCGATCTGCAAGATTTACACGCGCTTTGTAATTAGACCATTTTCCACTCTTTAGTTACATTACCTTGTAATTAAACAGAAATGCCAATAATTGTTCAGTTAGATTGATGTCTACAACACCACAGCATTATGAAGTATTGTATCAGATCGAAGAAATCTGATTTCGACTAACAGGATAAGGATATTAAGGCAACTCGTTGATTTTGTTATTGTTTTAACCTCCCATGGCCTCTGTAAACTATATTAATGATATGTCTAGGCTCGCAATTCAAGGACATCTAATAAAATTATTAATGTTGTCTCAGCTG

Ace file of the UniGene sp_v1.1_unigene2873

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os01g0570500 protein n=2 Tax=Oryza sativa RepID=Q656Y0_ORYSJ	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	protein	-	-	73%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	73%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	73%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	73%
Blast2go	Protein kinase-like domain	IPR011009	-	73%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	73%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	73%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUC1

Fln msg:

Fln protein: METLIGRKYSLGRKIGSGAFGEIFIGTDVRTKEEVAIKMEKVKTNHPQLIYESKVYRHLYGGVGIPNIRWFGTEGDYNIIVLDLLGPSLEDLFLFCGRRFSLKTVLMLADQLIERVEYIHSKSFMHRDMKPDNFLMGLGQKANQVYVIDFGLAKKFQDPVTLRHIHFRANKSLTGTARYASVNTHNGIEQSRRDDIESLGYVLMYFLRGSLPWQGLKAANKKQKYDKICQKKIATPIESLCKSHPTEFALYFQHCKSLAFDDTPDYVYLKGLFQDLFKREGFKYDYVFDWTILKYQQAQSSGAVPRLPPAQGGTSSGATPSAADMVAGVKDGHDATETAEPAGEALKVGFGGGPHLDSTKHKASNVHATKDGDLPDKELIQPRIYTPRIYNPRRPVISTDRPVISTEAADAKRVFGGKIGATNFHAPTTDRLSKADRLSSSDSKRMVQEAPLQSSGRNHEARSQVLMKRF*

Protein Length: 472

Fln nts: AAGCAAGTGGTATCAACGCAGAGTACATGGGGATCTCTTTTGGTTGTGTTTTACAAATATTGAATTTGTGTGCGAAAGCAATAGCGTAGGGGAAAGCTATATACCCAGCCACCCAACGTCGTGACCTTGGCTGTCATTGCTGGCC_-_ATGGAGACCCTCATTGGCAGAAAATACAGTCTCGGACGCAAGATCGGCAGCGGTGCCTTTGGCGAGATATTTATCGGAACCGATGTTCGGACAAAGGAGGAAGTGGCTATTAAGATGGAGAAAGTGAAAACAAATCACCCACAGTTGATATATGAATCTAAAGTGTATAGACATCTTTATGGAGGAGTTGGTATTCCAAACATCAGATGGTTTGGGACAGAAGGAGATTATAATATTATAGTTCTAGATTTGCTGGGTCCCAGCCTAGAAGATTTATTTCTGTTTTGTGGGCGTAGATTCTCGCTGAAGACTGTATTAATGTTAGCTGATCAGCTGATTGAGAGGGTGGAATATATACATTCAAAATCATTTATGCACAGAGACATGAAGCCTGATAATTTTCTTATGGGGCTTGGTCAGAAAGCAAATCAGGTCTACGTGATTGATTTCGGTCTTGCAAAGAAGTTCCAAGACCCAGTGACCCTACGTCATATTCACTTCAGGGCAAACAAAAGTTTAACTGGAACTGCACGCTATGCAAGTGTCAATACTCACAATGGCATCGAGCAAAGCCGAAGGGATGATATTGAGTCTCTTGGATATGTTCTCATGTACTTCTTAAGGGGAAGCCTTCCTTGGCAAGGTCTGAAGGCAGCAAATAAGAAGCAAAAGTATGATAAAATATGTCAGAAGAAGATAGCTACCCCTATTGAATCATTATGCAAGTCCCATCCGACAGAGTTTGCATTGTACTTTCAACATTGCAAGTCTCTGGCTTTTGATGACACGCCAGATTACGTATATTTGAAGGGCTTGTTCCAAGATTTGTTTAAACGTGAAGGTTTCAAGTATGATTATGTGTTCGATTGGACCATCCTAAAATATCAACAAGCACAAAGTTCCGGAGCTGTACCACGGTTGCCTCCTGCACAGGGAGGTACAAGCAGTGGAGCAACACCATCGGCTGCTGACATGGTTGCAGGAGTAAAAGATGGCCATGATGCAACTGAAACTGCAGAACCTGCAGGAGAAGCTCTCAAAGTAGGTTTTGGAGGTGGCCCACATTTGGATTCAACAAAGCACAAAGCCAGTAATGTTCATGCTACTAAAGATGGAGATCTCCCTGATAAAGAGCTTATCCAACCACGGATATATACACCACGGATATACAACCCGCGGAGACCTGTGATTTCCACTGACAGACCAGTTATATCAACAGAAGCAGCTGATGCAAAACGTGTATTTGGTGGCAAGATTGGTGCAACGAACTTTCACGCTCCAACAACAGATCGTCTTTCAAAAGCAGATCGTCTTTCTTCATCAGATTCCAAGAGAATGGTACAAGAGGCCCCATTGCAAAGTTCTGGCAGAAATCATGAAGCGCGTTCTCAAGTCCTCATGAAGCGCTTTTAG___AGTTTTGGAGATGCCCCTGGACATTGAAAATATCTGGTTTCATGATGTCCTCTGTATGGTGGTTGCAAATCAGTGGATCCAAGACACTGCTGAAATGCAACCTATTTGTGATCCTTCCCGTTGATCTTTGTATCTTAGTGTATTGCCAACTTTCAAAAACCAATCTGTGAAACCCTGAGAGATTTCCTGTCATTGTTTACATCGATCTGCAAGATTTACACGCGCTTTGTAATTAGACCATTTTCCACTCTTTAGTTACATTACCTTGTAATTAAACAGAAATGCCAATAATTGTTCAGTTAGATTGATGTCTACAACACCACAGCATTATGAAGTATTGTATCAGATCGAAGAAATCTGATTTCGACTAACAGGATAAGGATATTAAGGCAACTCGTTGATTTTGTTATTGTTTTAACCTCCCATGGCCTCTGTAAACTATATTAATGATATGTCTAGGCTCGCAATTCAAGGACATCTAATAAAATTATTAATGTTGTCTCAGCTG

Fln Alignment:

sp_v1.1_unigene2873___METLIGRKYSLGRKIGSGAFGEIFIGTDVRTKEEVAIKMEKVKTNHPQLIYESKVYRHLYGGVGIPNIRWFGTEGDYNIIVLDLLGPSLEDLFLFCGRRFSLKTVLMLADQLIERVEYIHSKSFMHRDMKPDNFLMGLGQKANQVYVIDFGLAKKFQDPVTLRHIHFRANKSLTGTARYASVNTHNGIEQSRRDDIESLGYVLMYFLRGSLPWQGLKAANXXXXXXXXXXXXXATPIESLCKSHPTEFALYFQHCKSLAFDDTPDYVYLKGLFQDLFKREGFKYDYVFDWTILKYQQAQSSGAVPRLPPAQGGTSSGATPSAADMVAGVKDGHDATETAEPAGEALKVGFGGGPHLDS-TKHKASNVHATKDG---------DLPDKELIQPRIYTPRIYNPRRPVISTDRPVISTEAADAKRVFGGKIGATNFHAPTTDRLSKADRLSSSDSKRMVQEAPLQSSGRNHEA
A9NUC1______________MEPRVGNKYRLGRKIGSGSFGEIYLGTNIQSNEEVAIKLENVKTKHPQLVYEAKLYRLLQGGTGIANVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRIEFVHSRCFLHRDVKPDNFLMGLGRRANQVYVIDFGLAKKYRDPVSHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATPIEVLCKTYPSEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVLDWTILKYQQTQMANTPPPSIGAAVGSSSRA-PPVADKSSGGQDGRDNPWSSAGADSSRRRNTGAIVNAGSLSKHKSPAQNESGAGKDVVNVGRPERPDRVHLSGLI-SQTGSTSRRGVISSSRQAILSDADSSSRPRAADLSPIALHNTGGQRSSP---VSSADPKRS-GSGRIMPSSRNYEA

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
1535		21		78	1.0
1536		78	21		1.0
1538		78	21		1.0
1540	78	21			1.0
1541		21	78		1.0
1543		78		21	1.0
1544		78	21		1.0
1545			23	76	1.0
1550	76			23	1.0
1551	76	23			1.0
1552	23		76		1.0
1554			76	23	1.0
1576		60	40		1.0
1577		60	4	36	1.0
1579			36	60	1.0
1580			64	36	1.0
1584	64	36			1.0
1588	61		34	3	1.0
1589	61	38			1.0
1590	61		3	34	1.0
1591	61		34		1.0
1593	80	19			1.0
1594	19	3		69	1.0
1596	7			92	0.999664
1597		26	73		1.0
1598	26		73		1.0
1945	85			14	0.999981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain