SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2871

Length: 2288 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2871
ATGGGGCTGTCAAAGAAAGCATAGAATTTTCTCCTCATTCTCGCACACGTTATACGTGGAAGTTGGAAGGGCTGATTTCTTCCCCTCATTCTTCCCCACGTTACATATGGTATCTGGAAGGGCTGATCTATTTATAATCTTCGCAAGCAAAATACATTAAAGGATTCGAAATCTCTGTTTGTAATGCATCGCCTTCCCCACATCGACCTCCGTTACGCTGTTGTGATAATCTGCTGGGATATAACACGGGGGCCGAATTATAGTTTTCAGGGTTTCAGAAGAATTTTGGCTCTCAGGGTTTGATAAGGAATTTCATCTGTCAGGGTTTGATAAAGAAACTCTGCTATTAGGGTTCCACGAAATTGGAGAAATTTTGCAGAATTTAAAGTTGCAGTGCAATAGTAGGGACTGTCTTTTTCATGTTTTTATGAATTTTTTGTTGGAAGAAGTTTACGAGGATGTTGAACAATGAGGAAGGAGTGAGCGGGAGCTTAAACAGGATAAGCCTGACCCAACTGGGTTGGAGGAGGGGTGCCGAAGATCCAGTGGAGGAGGAAGAAGCTCCCACATACCTGAATACCACCACCAATTGCCCTTTCTTGGTCATATCAACTGATAAGCTCTCTGCACAGTATAACGGTGAAGCGCGGCATGGCTATGATGTCGGAGCAATACAGGGCAACTGCCCCGCTCCGGTCCGGAAGCTTCTTTATTACTTTGAGATTAATGTCAAGGACAAGGGACAGAAAGGCAACGTTTCTATTGGCTTCACCGATCAGCATTTCAAGATGACCAGACAACCCGGGTGGGAACCGAATAGCTTCGGGTATCACGGAGATGATGGATATCTGTACCATGGAAATGGAAAGGGTGGTGAACCTTTTGGTCCCAAATTTACAACTGGAGATACAGTGGGAGCTGGCATAAATTATGCTTCACAGACTGTGTTTTTTACAAAGAATGGAAAGCTTGTCGGATCAACTCCAAAGGAAGTTAAGGGGCCCTTATATCCTACAATTGGTCTTCATAGCCCAAATGAGAAGACGGATGTGAATTTTGGACAACGGCCATTTGTGTTTGATATTGAGCAATTGGCGCAAGAGGAGAGAGAAAAACGCCAAACAATAATAGAAAAAGTATCGTTGCCCCTTAGTGTCAGCCATTGGATTGTTCGTTCTTACCTACTCCATTATGGATACAAAGAGACACTTGCATCCTTTGATACAGCGAGCGGAAATACATTTCCTCCAGTATTGCCTACTCCTCAAGAAAATATTTCTCTAGAGATAGTGACCTATGCATTAGACCAACGAAAGATATTACGCCAGCTTATTAGGAATGGTGATGTTGATTCTGCATTCAAGAAGCTTCGGGAATGGTATCCACAACTTGTTCAGGATGACATGTCCACTATTTGCTTCCTTCTTCATTGTCAAAAGTACATCGAACTTATTATGAAAGGAATGTTGGAGAGTGCAGTAACTTATGCTCGCTCTGAGTTAGCGAGATTTTTTGGAGTAAAGAATCTTGAGGATCTACTTCAGGATTGTCTTGCATTGCTTGCATATGAGGAACCAGCGAAGTCTTCTGTAGGATACCTACTCAGCCTGGCTCAAAGAGAACTAGTTGCAGATGCAGTAAATGCTATGGTCTTATCAACTAATCCTGCAGTGCAAAATCCAGAAAGTTGTCTGCAATCATCTCTTGAAAGATTACTGAGGCAGCTAACAGCCTGTTGTTTAGAGAGACGGCTTCTTAATGGGGGACAAGGTGAAATATTTTGTTTGCACAAGATGTTACATGGTGGCAAGGAAGGATCATGGTGAACTGTAATTGTACTTATTTTGAATTTCAAGCGCCCTTAGTTCATGTGTATTAATAATTTTGGAAGCGTTATTGCACGTTATTTTGTTAATGGTGGATGTTCATTGTTTTCTATATAATTAGTAGTTTCACGATTCATCTGTGTCCGTATTCCTTGAATGTTACTGATGGTCTGAAATTTGGTTCCCACGTATTTACACTGTTATTTAATGGAAATGTTCGCGAAATACATGAACTTTGAGCGTGCAAAAACAATTTGCATACAAGTTTAAAACTGCCAAGAGTTTGCTTTTTAGTATCATTTTTTTTGATTATCTTCCATAAGTTACAGATTTTTCTTTGAGATACTCAGGCACTGTTGTGCTGTTCCCTTCCAATGAATGAGCAGAACTGAATTTTCTAATAGATTACTAATCTGAAGCAGATCCAATGGACTTGAACTTTGAAGTGATGAACAGAGGTTA

Ace file of the UniGene sp_v1.1_unigene2871

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to SPla/RYanodine receptor (SPRY) domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI00019854FB	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	spla ryanodine receptor domain-containing protein	-	-	72%

Source	InterPros	Term	Type	Identity
Blast2go	B30.2/SPRY domain	IPR001870	-	72%
Blast2go	SPla/RYanodine receptor SPRY	IPR003877	-	72%
Blast2go	CTLH, C-terminal LisH motif	IPR006595	-	72%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	72%
Blast2go	CRA domain	IPR013144	-	72%
Blast2go	SPla/RYanodine receptor subgroup	IPR018355	-	72%
Blast2go	Ran binding protein, CRA domain	IPR019589	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQZ1

Fln msg:

Fln protein: MLNNEEGVSGSLNRISLTQLGWRRGAEDPVEEEEAPTYLNTTTNCPFLVISTDKLSAQYNGEARHGYDVGAIQGNCPAPVRKLLYYFEINVKDKGQKGNVSIGFTDQHFKMTRQPGWEPNSFGYHGDDGYLYHGNGKGGEPFGPKFTTGDTVGAGINYASQTVFFTKNGKLVGSTPKEVKGPLYPTIGLHSPNEKTDVNFGQRPFVFDIEQLAQEEREKRQTIIEKVSLPLSVSHWIVRSYLLHYGYKETLASFDTASGNTFPPVLPTPQENISLEIVTYALDQRKILRQLIRNGDVDSAFKKLREWYPQLVQDDMSTICFLLHCQKYIELIMKGMLESAVTYARSELARFFGVKNLEDLLQDCLALLAYEEPAKSSVGYLLSLAQRELVADAVNAMVLSTNPAVQNPESCLQSSLERLLRQLTACCLERRLLNGGQGEIFCLHKMLHGGKEGSW*

Protein Length: 457

Fln nts: ATGGGGCTGTCAAAGAAAGCATAGAATTTTCTCCTCATTCTCGCACACGTTATACGTGGAAGTTGGAAGGGCTGATTTCTTCCCCTCATTCTTCCCCACGTTACATATGGTATCTGGAAGGGCTGATCTATTTATAATCTTCGCAAGCAAAATACATTAAAGGATTCGAAATCTCTGTTTGTAATGCATCGCCTTCCCCACATCGACCTCCGTTACGCTGTTGTGATAATCTGCTGGGATATAACACGGGGGCCGAATTATAGTTTTCAGGGTTTCAGAAGAATTTTGGCTCTCAGGGTTTGATAAGGAATTTCATCTGTCAGGGTTTGATAAAGAAACTCTGCTATTAGGGTTCCACGAAATTGGAGAAATTTTGCAGAATTTAAAGTTGCAGTGCAATAGTAGGGACTGTCTTTTTCATGTTTTTATGAATTTTTTGTTGGAAGAAGTTTACGAGG_-_ATGTTGAACAATGAGGAAGGAGTGAGCGGGAGCTTAAACAGGATAAGCCTGACCCAACTGGGTTGGAGGAGGGGTGCCGAAGATCCAGTGGAGGAGGAAGAAGCTCCCACATACCTGAATACCACCACCAATTGCCCTTTCTTGGTCATATCAACTGATAAGCTCTCTGCACAGTATAACGGTGAAGCGCGGCATGGCTATGATGTCGGAGCAATACAGGGCAACTGCCCCGCTCCGGTCCGGAAGCTTCTTTATTACTTTGAGATTAATGTCAAGGACAAGGGACAGAAAGGCAACGTTTCTATTGGCTTCACCGATCAGCATTTCAAGATGACCAGACAACCCGGGTGGGAACCGAATAGCTTCGGGTATCACGGAGATGATGGATATCTGTACCATGGAAATGGAAAGGGTGGTGAACCTTTTGGTCCCAAATTTACAACTGGAGATACAGTGGGAGCTGGCATAAATTATGCTTCACAGACTGTGTTTTTTACAAAGAATGGAAAGCTTGTCGGATCAACTCCAAAGGAAGTTAAGGGGCCCTTATATCCTACAATTGGTCTTCATAGCCCAAATGAGAAGACGGATGTGAATTTTGGACAACGGCCATTTGTGTTTGATATTGAGCAATTGGCGCAAGAGGAGAGAGAAAAACGCCAAACAATAATAGAAAAAGTATCGTTGCCCCTTAGTGTCAGCCATTGGATTGTTCGTTCTTACCTACTCCATTATGGATACAAAGAGACACTTGCATCCTTTGATACAGCGAGCGGAAATACATTTCCTCCAGTATTGCCTACTCCTCAAGAAAATATTTCTCTAGAGATAGTGACCTATGCATTAGACCAACGAAAGATATTACGCCAGCTTATTAGGAATGGTGATGTTGATTCTGCATTCAAGAAGCTTCGGGAATGGTATCCACAACTTGTTCAGGATGACATGTCCACTATTTGCTTCCTTCTTCATTGTCAAAAGTACATCGAACTTATTATGAAAGGAATGTTGGAGAGTGCAGTAACTTATGCTCGCTCTGAGTTAGCGAGATTTTTTGGAGTAAAGAATCTTGAGGATCTACTTCAGGATTGTCTTGCATTGCTTGCATATGAGGAACCAGCGAAGTCTTCTGTAGGATACCTACTCAGCCTGGCTCAAAGAGAACTAGTTGCAGATGCAGTAAATGCTATGGTCTTATCAACTAATCCTGCAGTGCAAAATCCAGAAAGTTGTCTGCAATCATCTCTTGAAAGATTACTGAGGCAGCTAACAGCCTGTTGTTTAGAGAGACGGCTTCTTAATGGGGGACAAGGTGAAATATTTTGTTTGCACAAGATGTTACATGGTGGCAAGGAAGGATCATGGTGA___ACTGTAATTGTACTTATTTTGAATTTCAAGCGCCCTTAGTTCATGTGTATTAATAATTTTGGAAGCGTTATTGCACGTTATTTTGTTAATGGTGGATGTTCATTGTTTTCTATATAATTAGTAGTTTCACGATTCATCTGTGTCCGTATTCCTTGAATGTTACTGATGGTCTGAAATTTGGTTCCCACGTATTTACACTGTTATTTAATGGAAATGTTCGCGAAATACATGAACTTTGAGCGTGCAAAAACAATTTGCATACAAGTTTAAAACTGCCAAGAGTTTGCTTTTTAGTATCATTTTTTTTGATTATCTTCCATAAGTTACAGATTTTTCTTTGAGATACTCAGGCACTGTTGTGCTGTTCCCTTCCAATGAATGAGCAGAACTGAATTTTCTAATAGATTACTAATCTGAAGCAGATCCAATGGACTTGAACTTTGAAGTGATGAACAGAGGTTA

Fln Alignment:

sp_v1.1_unigene2871___MLNNEEGVSGSLNRISLTQLGWRRGAEDPVEEEEAPTYLNTTTNCPFLVISTDKLSAQYNGEARHGYDVGAIQGNCPAPVRKLLYYFEINVKDKGQKGNVSIGFTDQHFKMTRQPGWEPNSFXXXXXXXXXXXXXXKGGEPFGPKFTTGDTVGAGINYASQTVFFTKNGKLVGSTPKEVKGPLYPTIGLHSPNEKTDVNFGQRPFVFDIEQLAQEEREKRQTIIEKVSLPLSVSHWIVRSYLLHYGYKETLASFDTASGNTFPPVLPTPQENISLEIVTYALDQRKILRQLIRNGDVDSAFKKLREWYPQLVQDDMSTICFLLHCQKYIELIMKGMLESAVTYARSELARFFGVKNXXXXXXXXXXXXXYEEPAKSSVGYLLSLAQRELVADAVNAMVLSTNPAVQNPXXXXXXXXXXXXXXXTACCLERRLLNGGQGEIFCLHKMLHGGKEGSW
B8LQZ1______________MLNNEEGVSGSLNRISLAQLGWRRGPDDPVEEEEAPTYLNTKINCPFLVISTDKLSAQYNGDARHGYDVGAIQSNCPAPVRKLLYYFEIYVKDKGHKGNVSIGFTDQHFKMSRQPGWEPNTYGYHGDDGLLYHGNGKDGEPFGPKFTTGDTVGAGINYASQTVYFTKNGKFVGSAPKDVKGPLYPTIGLHSPNEKVDVNFGQRPFVFDIEQLAQEEREKCQAIIEKVSLPLSVSHWIVRSYLLHYGYKDTLASFDTASGNTIPSVLPTPQENNSLDIVTYALDERKLLRQLIRNGDIDSAFKRLRERYPQLVQDDMSTICFLLHCQKYIELVMKGMLEIAVTYARSELSRFFGVKYLEDLLQDCLALLAYEEPGKSSVGYLLSLAQRELVADAVNAVVLSTNPAVQNPESCLQSSLERLLRQLTACCLERRLLNGGQGEIFCLHKMLHGVKEGSW

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1036	75		25		0.996473
1959	11		88		0.923564
1962		12		87	0.992554
2005	63			36	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain