SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2861

Length: 2172 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2861
AAATTATAGAAGATGATGAAGATGAAGACGAGGAGGTCCACTTAGTTCCAAATAGTGCTGATGATGCTCCTCGTGATGCCGTTTTGGAGCAGAATGCCAAGGGGGTTGAAGGTCATATTACAGCCCGTCCAACTGGGCGTGTTATTGGTATAATTAAGAGGAATTGGCATTCGTACTGTGGGTCTCTGGAGCCAATGCCTATGCCTGCAGGTGGTGGTGGAATTGTCAACGCTTTATTTGTATCTACTGATCGCAGATTACCTAAGATCCGAATTCAAACCCGACAACTTGGAAATCTCATTGACAAGCGGATCATTGTAGCTGTTGATTCATGGGATCGGTTATCACGGTATCCATCTGGTCACTATGTGCGGACAATAGGAGAAATAGGTGATCGTGCTACAGAAACCGAGGTTTTGCTAATTGAGAACGACATCAACACAAGAGCATTTTCTGAACAGGTTCTAGCTTGCTTGCCACCCTTGCCCTGGACATTACAACCAGAAGATTTGAGTGATCCTCACCGAGAGGATCTACGCCACTTGAGAGTATTCAGTGTGGATCCACCTGGTTGCAAGGATATTGATGATGCACTATGCTGCCGAGCACTCCCAAATGGAAATTTCGAAGTTGGAGTCCACATTGCTGATGTTACAAATTTTGTTCTCCCCGGTACACCTCTTGATGAAGAAGCTTCGGAAAGAGGCACGTCTGTTTACTTGGTTGAGCGGAGAATAGATATGCTCCCAAAACCACTTACTGAAGATATATGCTCACTCCGTTCAGATGTTGAAAGATTGGCCTTTTCAGTTCTTTGGGAAATGACTCCTTCAGCAGATATTGTTTCTGTGAGATTTACCAAAAGTGTTATCAAGTCATGTGCAGCATTGTCTTACATCGAGGCTCAAGCACGGATGGATGACAGTCGGTTGGCTGATCCTATAACAGTCGATCTGCGCAATATGAATTCATTAGCAAAGATCATGAGGGCCAGACGGATTGAAAGGGGAGCTCTGACTCTTGCATCTGCGGAGGTTAAGTTTGACATAGATACTGAAACACATGATCCACTTGATATTGGTATTTATCAAATTCGTGAGGCAAATCAAATGGTTGAGGAGTTTATGCTAGCTGCAAATGTTTCAGTTGCTGAGAAAATATTAAAACATTTCCCTTTGTGTTCACTTCTGAGGCGTCATCCAAGTCCAACGCCAGAAATGCTTGAACCCTTGTTGTGCATAACGGCATCTGTTGGAGTTGAACTGGATATTTCATCTTCAAAAGCATTAGCTGATTCTCTTGATCGTGCTGTGGATGATGATCCATATTTTAACAAGCTGGTCCGAATTCTTACAACACGATGCATGACCCAGGCAGTTTATTTCTGCAGTGGAGACCTCACTCCTCCGGAATTCCATCATTATGGTCTTGCATCTCCCTTGTATACACATTTTACATCACCAATTAGGCGATATGCAGATGTTATAGTTCACAGATTACTTGCTGCTGCTTTGGATTTGTATAAGTTACCTGGTGTGTTTCAAGACCGGGCACGTCTGACGAGTATTGCTGACAATTTGAACTATCGGCATCGAAATGCTCAAATGGCTGGCCGTGCTTCTGTTGAGCTTCATACTCTTATTTATTTCAGAAAACGGCCAATAGATGCAGAAGCGAGAATTGTCAAAATCAGATCTAATGGCTTAATTGTGTTTGTTCCCAAATATGGTATTGAAGGTCCCGTTTATTTGATCCCAAAGGAAAAAACTAAAGATAATCAATCAGGAAAGGGAAGTAATGGACAGATTGAATGGGTAGTCGATCAGGAACATCAGACAGTGACAAAAGCAGATAGAAGTGTATCCTATAAAGTACTGAAATCAGTAAAGGTTCATATAGAGGTGGTTGAACCTCAACCTAATCGGCCCAAGCTTCAGCTTACTCTCATCAATGTCTAGTTTCTGTTGTAATATATCCCTGTTTATTTTTCATGCCACTGGAAGTTGAGACATTGGAAGTTGGGACATCTAGTGTTCTTCTCATTATGATAAATGGCTTCTGTATGATATTCATTATTTTGATAAGTTAAATCTCAATGATGTCTTAGTTTATTAGTGGTATTTGCCTTTTTCGGTGGCCAACCATGACATCTGTTTTTTCTGATTAAAAACG

Ace file of the UniGene sp_v1.1_unigene2861

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mitotic control protein dis3, putative (EC:3.1.13.1); K12585 exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	81%
Blast2go	protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on ester bonds, Exoribonucleases producing 5'-phosphomonoesters.	EC:3.1.13.-	-	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribonuclease II/R	IPR001900	-	0.0	80%
Blast2go	Ribonuclease II/R, conserved site	IPR022966	-	0.0	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7SWC0

Fln msg: your sequence is shorter than subject: 652 - 937

Fln protein: IIEDDEDEDEEVHLVPNSADDAPRDAVLEQNAKGVEGHITARPTGRVIGIIKRNWHSYCGSLEPMPMPAGGGGIVNALFVSTDRRLPKIRIQTRQLGNLIDKRIIVAVDSWDRLSRYPSGHYVRTIGEIGDRATETEVLLIENDINTRAFSEQVLACLPPLPWTLQPEDLSDPHREDLRHLRVFSVDPPGCKDIDDALCCRALPNGNFEVGVHIADVTNFVLPGTPLDEEASERGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVLWEMTPSADIVSVRFTKSVIKSCAALSYIEAQARMDDSRLADPITVDLRNMNSLAKIMRARRIERGALTLASAEVKFDIDTETHDPLDIGIYQIREANQMVEEFMLAANVSVAEKILKHFPLCSLLRRHPSPTPEMLEPLLCITASVGVELDISSSKALADSLDRAVDDDPYFNKLVRILTTRCMTQAVYFCSGDLTPPEFHHYGLASPLYTHFTSPIRRYADVIVHRLLAAALDLYKLPGVFQDRARLTSIADNLNYRHRNAQMAGRASVELHTLIYFRKRPIDAEARIVKIRSNGLIVFVPKYGIEGPVYLIPKEKTKDNQSGKGSNGQIEWVVDQEHQTVTKADRSVSYKVLKSVKVHIEVVEPQPNRPKLQLTLINV*

Protein Length: 653

Fln nts: AAATTATAGAAGATGATGAAGATGAAGACGAGGAGGTCCACTTAGTTCCAAATAGTGCTGATGATGCTCCTCGTGATGCCGTTTTGGAGCAGAATGCCAAGGGGGTTGAAGGTCATATTACAGCCCGTCCAACTGGGCGTGTTATTGGTATAATTAAGAGGAATTGGCATTCGTACTGTGGGTCTCTGGAGCCAATGCCTATGCCTGCAGGTGGTGGTGGAATTGTCAACGCTTTATTTGTATCTACTGATCGCAGATTACCTAAGATCCGAATTCAAACCCGACAACTTGGAAATCTCATTGACAAGCGGATCATTGTAGCTGTTGATTCATGGGATCGGTTATCACGGTATCCATCTGGTCACTATGTGCGGACAATAGGAGAAATAGGTGATCGTGCTACAGAAACCGAGGTTTTGCTAATTGAGAACGACATCAACACAAGAGCATTTTCTGAACAGGTTCTAGCTTGCTTGCCACCCTTGCCCTGGACATTACAACCAGAAGATTTGAGTGATCCTCACCGAGAGGATCTACGCCACTTGAGAGTATTCAGTGTGGATCCACCTGGTTGCAAGGATATTGATGATGCACTATGCTGCCGAGCACTCCCAAATGGAAATTTCGAAGTTGGAGTCCACATTGCTGATGTTACAAATTTTGTTCTCCCCGGTACACCTCTTGATGAAGAAGCTTCGGAAAGAGGCACGTCTGTTTACTTGGTTGAGCGGAGAATAGATATGCTCCCAAAACCACTTACTGAAGATATATGCTCACTCCGTTCAGATGTTGAAAGATTGGCCTTTTCAGTTCTTTGGGAAATGACTCCTTCAGCAGATATTGTTTCTGTGAGATTTACCAAAAGTGTTATCAAGTCATGTGCAGCATTGTCTTACATCGAGGCTCAAGCACGGATGGATGACAGTCGGTTGGCTGATCCTATAACAGTCGATCTGCGCAATATGAATTCATTAGCAAAGATCATGAGGGCCAGACGGATTGAAAGGGGAGCTCTGACTCTTGCATCTGCGGAGGTTAAGTTTGACATAGATACTGAAACACATGATCCACTTGATATTGGTATTTATCAAATTCGTGAGGCAAATCAAATGGTTGAGGAGTTTATGCTAGCTGCAAATGTTTCAGTTGCTGAGAAAATATTAAAACATTTCCCTTTGTGTTCACTTCTGAGGCGTCATCCAAGTCCAACGCCAGAAATGCTTGAACCCTTGTTGTGCATAACGGCATCTGTTGGAGTTGAACTGGATATTTCATCTTCAAAAGCATTAGCTGATTCTCTTGATCGTGCTGTGGATGATGATCCATATTTTAACAAGCTGGTCCGAATTCTTACAACACGATGCATGACCCAGGCAGTTTATTTCTGCAGTGGAGACCTCACTCCTCCGGAATTCCATCATTATGGTCTTGCATCTCCCTTGTATACACATTTTACATCACCAATTAGGCGATATGCAGATGTTATAGTTCACAGATTACTTGCTGCTGCTTTGGATTTGTATAAGTTACCTGGTGTGTTTCAAGACCGGGCACGTCTGACGAGTATTGCTGACAATTTGAACTATCGGCATCGAAATGCTCAAATGGCTGGCCGTGCTTCTGTTGAGCTTCATACTCTTATTTATTTCAGAAAACGGCCAATAGATGCAGAAGCGAGAATTGTCAAAATCAGATCTAATGGCTTAATTGTGTTTGTTCCCAAATATGGTATTGAAGGTCCCGTTTATTTGATCCCAAAGGAAAAAACTAAAGATAATCAATCAGGAAAGGGAAGTAATGGACAGATTGAATGGGTAGTCGATCAGGAACATCAGACAGTGACAAAAGCAGATAGAAGTGTATCCTATAAAGTACTGAAATCAGTAAAGGTTCATATAGAGGTGGTTGAACCTCAACCTAATCGGCCCAAGCTTCAGCTTACTCTCATCAATGTCTAG___TTTCTGTTGTAATATATCCCTGTTTATTTTTCATGCCACTGGAAGTTGAGACATTGGAAGTTGGGACATCTAGTGTTCTTCTCATTATGATAAATGGCTTCTGTATGATATTCATTATTTTGATAAGTTAAATCTCAATGATGTCTTAGTTTATTAGTGGTATTTGCCTTTTTCGGTGGCCAACCATGACATCTGTTTTTTCTGATTAAAAACG

Fln Alignment:

sp_v1.1_unigene2861___VHLVPNSADDAPRDAVLEQNAKGVEGHITARPTGRVIGIIKRNWHSYCGSLEPMPMPAGGGGIVNALFVSTDRRLPKIRIQTRQLGNLIDKRIIVAVDSWDRLSRYPSGHYVRTIGEIGDRATETEVLLIENDINTRAFSEQVLACLPPLPWTLQPEDLSDPHREDLRHLRVFSVDPPGCKDIDDALCCRALPNGNFEVGVHIADVTNFVLPGTPLDEEASERGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVLWEMTPSADIVSVRFTKSVIKSCAALSYIEAQARMDDSRLADPITVDLRNMNSLAKIMRARRIERGALTLASAEVKFDIDTETHDPLDIGIYQIREANQMVEEFMLAANVSVAEKILKHFPLCSLLRRHPSPTPEMLEPLLCITASVGVELDISSSKALADSLDRAVDDDPYFNKLVRILTTRCMTQAVYFCSGDLTPPEFHHYGLASPLYTHFTSPIRRYADVIVHRLLAAALDLYKLPGVFQDRARLTSIADNLNYRHRNAQMAGRASVELHTLIYFRKRPIDAEARIVKIRSNGLIVFVPKYGIEGPVYLIPKEKTKDNQSGKGSNGQIEWVVDQEHQTVTKADRXXXXXXXXXXXXHIEVVEPQPNRPKLQLTLI
D7SWC0______________VHLVPSSADDAPRNTDLAQGSVGGTKAVLCRPSGRVVGIIKRNWHSYCGSLEPMPMPAGNGGIAHALFVSKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCLSRYPSGHYVRTIGEIGDRDTESEVVLIENDINSRPFSLQVLACLPPLPWSVSSEDLANPCRLDLRHVCVFSVDPPGCKDIDDALHCTTLPNGNFEVGVHIADVTNFVHPGTPLDDEAAQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPQAEIISTKYTKSIIKSCAALSYIEAQARMDDSRLMDPLTMDLRNMNALAKVMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEKILKHFPLCSLLRRHPSPTREMLEPLLRTAAAVGLNLDVSSSKALADSLDHAVGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEFHHYGLAAPLYTHFTSPIRRYADVIVHRLLAASLGLYKLPTIFQDNAQLTSTADNLNYRHRNAQMAGRASVELHTLIYFRKRPTDTEARIVKIRSNGFIVFVPKYGIEGPVYLTP----------RGEKGGGEWVVDEQQQKVKKMDGSISYSVLQTVMIHMEVVEPQPNRPKLELALI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
554			10	90	0.90298
555	11		11	77	0.968132
1913	83	16			0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain