SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2855

Length: 1416 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2855

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	prohibitin, putative	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	cell growth	GO:0016049	Biological Process	88%
Blast2go	response to salt stress	GO:0009651	Biological Process	88%
Blast2go	cell division	GO:0051301	Biological Process	88%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	88%
Blast2go	mitochondrion organization	GO:0007005	Biological Process	88%
Blast2go	lateral root development	GO:0048527	Biological Process	88%
Blast2go	response to nitric oxide	GO:0071731	Biological Process	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	88%
Blast2go	nucleolus	GO:0005730	Cellular Component	88%
Blast2go	vacuole	GO:0005773	Cellular Component	88%
Blast2go	respiratory chain complex I	GO:0045271	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Prohibitin	IPR000163	-	0.0	88%
Blast2go	Band 7 protein	IPR001107	-	0.0	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACQ5

Fln msg: your sequence is shorter than subject: 276 - 294

Fln protein: MSVQRALSNIAALAISVGTGVGLLNASLYTVDGGHKAVLFDRFRGVLDTTVGEGTHFLIPWLQKPYVFEIRTKPRSISTITGTKDLQMVNISLRILARPKEDSLPDIFQRLGLDYDERVLPSIGNEVLKAVVAQFNADQLLTERPTVSALVREALLHRAKDFNILLDDVAITHLSYGPEFSKAVEQKQVAQQEAERSKFVVAKAEQERRAAVVRAEGESEAAKLISLATSAAGLGLIELRRIEAAKEIASTLSRSPNVVYLPSGNNMLLGLNPSH*

Protein Length: 277

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATGTTTTGAGGTTCTGGGTTTTGTGTAAAGCATAACATTGCGATAATCGAGAAGAGAGAGAGCA_-_ATGTCTGTACAAAGAGCGTTATCAAACATAGCTGCGCTAGCCATCAGCGTTGGAACGGGAGTCGGCCTCCTAAACGCGTCGCTGTATACCGTGGATGGGGGGCACAAAGCGGTCCTTTTCGACAGATTCAGAGGCGTCCTGGACACCACCGTGGGGGAAGGCACCCACTTCCTCATTCCATGGCTTCAGAAGCCCTACGTATTCGAGATCAGAACGAAACCCCGCTCCATCAGCACCATCACGGGCACCAAGGACCTCCAGATGGTGAACATCTCCCTGAGGATACTTGCCAGGCCCAAAGAGGACTCGTTACCCGACATATTCCAGAGGCTCGGCCTCGATTACGACGAGAGAGTGTTGCCCTCCATTGGGAATGAGGTCTTGAAGGCCGTCGTGGCGCAGTTCAACGCTGACCAGCTCTTGACCGAGAGGCCAACGGTTTCTGCTCTGGTCAGGGAGGCTCTGCTGCATCGCGCCAAAGATTTTAACATTTTGTTGGACGACGTGGCCATCACCCATCTGTCCTATGGCCCCGAGTTCTCAAAAGCAGTGGAGCAGAAGCAGGTGGCGCAGCAGGAAGCCGAGAGGTCGAAGTTTGTGGTTGCCAAAGCTGAGCAGGAGAGGAGAGCTGCCGTGGTGAGAGCAGAGGGGGAGAGTGAGGCTGCTAAGCTTATTTCCCTGGCCACGTCTGCTGCGGGACTAGGGCTAATTGAGCTCAGGCGTATCGAGGCTGCCAAGGAGATTGCTTCCACCCTTTCTCGGAGCCCTAATGTGGTCTACTTGCCCTCTGGCAACAACATGCTCTTGGGCTTGAACCCTTCGCATTGA___ACAGGAGGCTACTGATCCATCTTTAGATGGTAAGAAGTTGATGATGAGCCCAAGTCACGGATGCGATCAGCATGCCCAGTATTTCTTGATAAATATACAAGAAATTATTTCTGTATATTTTTTATGCGGTGGAGGTTTTTTGGGCAAAGAATATTCATATTACCGATTTAGAACTCGAAAATATTTCAAATATCAAGATGCAGAGAAATAACAAGCTTAAGCCTTCTAGGAAAAAATAAGCTTTCCGAAAAACAGCTTTGCTCGGATATATATGTTATATGTTATTAATTTATCAAGGTTGGGATGTATATGTTATCTGTTATTCATTTATCAAGGTTGGAGCGTTCCATGTATGTTTGAAGACAAAGTTGATGTGATCCGTTTTAAAGTAGTGAGTTTAATGTCATACACCTGGTTGTATTTTCATCTTTTGAGCATGGCAATGTTGAGAACTACTATCAATAAGCGAACTAGTGAGCTAAAGTTTCCTCCTAGAAAC

Fln Alignment:

sp_v1.1_unigene2855___GVGLLNA--SLYTVDGGHKAVLFDRFRGVLDTTVGEGTHFLIPWLQKPYVFEIRTKPRSISTITGTKDLQMVNISLRILARPKEDSLPDIFQRLGLDYDERVLPSIGNEVLKAVVAQFNADQLLTERPTVSALVREALLHRAKDFNILLDDVAITHLSYGPEFSXXXXXXXXXXXXXXRSKFXXXXXXXXXXXXXXXXXXXXXXXKLISLATSAAGLGLIELRRIEAAKEIASTLSRSPNVVYLPSGNNMLLGL
D5ACQ5______________GAGLYGALNSLYNVEGGHRAIVFNRIVGVKDKVYPEGTHLMIPWFDRPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPMPDQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRRILTERASHFNIALDDVSITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAIIRAQGEATSAQLIGEAIS-NNPAFITLRKIEASREIAHTISNSTNRVFLNS-DSLLLNL

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
48			66	33	0.997452
760			10	90	0.90298
762	88	11			0.923564
763			11	88	0.923564
765			11	88	0.923564
766	11	88			0.923564
770			88	11	0.923564
772		88	11		0.923564
775		88		11	0.923564
779		11		88	0.923564
780			88	11	0.923564
782	11			88	0.923564
856		87		12	0.992554
858	87		12		0.992554
859	87	12			0.992554
863	12		87		0.992554
864		12	87		0.992554
934		87		12	0.992554
940	12	12		75	0.975346
941	25			75	1.0
951			87	12	0.992554
952	87	12			0.992554
956	12			87	0.992554
975		37		62	1.0
1003			11	88	0.923564
1005		11	88		0.923564
1006	88		11		0.923564
1008	88		11		0.923564
1010	88	11			0.923564
1011		11		88	0.923564
1012	88			11	0.923564
1014	88		11		0.923564
1016	90	3		6	0.997952
1019	92			7	0.999664
1022		8		92	0.999718
1064	81		18		0.999994
1153	83			16	0.994512
1154		20		40	1.0
1155	80	20			0.995493
1320			40	60	1.0
1346		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain