SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2851

Length: 499 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2851
AAAATGAGAGAAGAGGAATTTGAGAGTAAATCCGGAAGCGAAAACATCGAGGGAGCATCTGGAGAAGAGCAGGATGTGGATCCACGGTCACGCAAAAAACGATACCATCGGCATGACCCAGGCAGTCAGATATCAAGAGTTGGAGATGTTCTTTCGAGAGTGTCCGCATCCTGATGATAAACAGAGGCAGGAACTCAGTCGGCGACTTTGCCTCGAGCCACGCCAAATTAAATTCTGGTTCCAGAACAAACGTACTCAAATGAAGGCTCACCATGAACGGCAGGATAATATTATGCTAAAATCAGAGAATGAGAAACTTCGTCTGGATAACATGAGGTACCGAGATGCTTTGAGCAGCATAACATGTCCCAACTGTGGAGGTCCGGCCACATTGGGAGAGATTTCATTTGATGAGCAGCAGTTACGTATCGAGAACGCCAAGCTCAGAGAAGAGGTCGAACGCATTTCGGGCATTGCTGCAAAATACGTGGGGAAGCCT

Ace file of the UniGene sp_v1.1_unigene2851

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Homeobox 1 n=1 Tax=Picea abies RepID=Q9FR59_PICAB	-	-	77%
FL-Next	tr=Homeobox 1; Picea abies (Norway spruce) (Picea excelsa).	-	-	78%
Blast2go	protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	epidermal cell differentiation	GO:0009913	Biological Process	87%
Blast2go	cotyledon development	GO:0048825	Biological Process	87%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	87%

Source	InterPros	Term	Type	Identity
Blast2go	Homeodomain	IPR001356	-	87%
Blast2go	Homeodomain-like	IPR009057	-	87%
Blast2go	Homeodomain-related	IPR012287	-	87%
Blast2go	Homeobox, conserved site	IPR017970	-	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FR59

Fln msg: Separated hits, possible frame ERROR between 114 and 134, Distance to subject end: 545 aas, your sequence is shorter than subject: 167 - 763

Fln protein: KMREEEFESKSGSENIEGASGEEQDVDPRSRKKRYHRxxxxxxxxQELEMFFRECPHPDDKQRQELSRRLCLEPRQIKFWFQNKRTQMKAHHERQDNIMLKSENEKLRLDNMRYRDALSSITCPNCGGPATLGEISFDEQQLRIENAKLREEVERISGIAAKYVGKP

Protein Length: 168

Fln nts: AAAATGAGAGAAGAGGAATTTGAGAGTAAATCCGGAAGCGAAAACATCGAGGGAGCATCTGGAGAAGAGCAGGATGTGGATCCACGGTCACGCAAAAAACGATACCATCGGCAxxxxxxxxxxxxxxxxxxxxxTCAAGAGTTGGAGATGTTCTTTCGAGAGTGTCCGCATCCTGATGATAAACAGAGGCAGGAACTCAGTCGGCGACTTTGCCTCGAGCCACGCCAAATTAAATTCTGGTTCCAGAACAAACGTACTCAAATGAAGGCTCACCATGAACGGCAGGATAATATTATGCTAAAATCAGAGAATGAGAAACTTCGTCTGGATAACATGAGGTACCGAGATGCTTTGAGCAGCATAACATGTCCCAACTGTGGAGGTCCGGCCACATTGGGAGAGATTTCATTTGATGAGCAGCAGTTACGTATCGAGAACGCCAAGCTCAGAGAAGAGGTCGAACGCATTTCGGGCATTGCTGCAAAATACGTGGGGAAGCCT

Fln Alignment:

sp_v1.1_unigene2851___KMREEEFESKSGSENIEGASGEEQDVDPRSRKKRYHRHxxxxxxxQELEMFFRECPHPDDKQRQELSRRLCLEPRQIKFWFQNKRTQMKAHHERQDNIMLKSENEKLRLDNMRYRDALSSITCPNCGGPATLGEISFDEQQLRIENAKLREEVERISGIAAKYVGKP
Q9FR59______________KIREEEFESKSGSDNVEGASGEDQDGERRPRKKRYHRHxxxxxxxQEMEMFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRSENEKLRSENMRYREALNNASCPNCGGPAALGEMSFDEQQLRMENARLREEIDRISGIAAKYVGKP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
412		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain