SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2847

Length: 3111 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene2847
ATGGGGATGATGATGAATGGGGGCGGCATACTGATGGAATCCACTTCGTCTCCACTTCGTCTCCTCTGTCAGTCACTACTAATTTAATATTGTTGTTTAGTTGTTGAGAACTATCACTGTTCAGTTTCATTCACTGCTGCTGTTTTAGGTTTACATTGGATCGACTCCGTTGTTGGGTGCAGTGAAATCCGAGTCGGTTTGAGTTTGGCTCGCTCTTTCTCCTCCTTATAATTAATAAAAACAAACTTTACACTGTAAAAAGAAACTTTACTGTGTTGGGTTGGGTTGGTTTGGTACGGAAGTCGATTTTGAGAGTAAAAGCTCTATTTGGCTTTGTTAGAAACATTTGGTTTTTGCCATTACAGGTGATTCTTTATTGGGCCGATGATGGAGCATTGGAATCCGTTAGATAAATCGAAAGCCATGTTAGGTTATGCTGAAACCTGCAAGTTGCTCTAAACTACACATACTTTGGGTTTTGGCTATAGTCGATTTTTCATTTCATTAGGCTTCTAGCTGTCCGAATCTGAATCGACGACGCTCTAGAAATTTTGAACCTTCGGGCGTTTTGCTCTCTCTATCATTCGTGTTCACATTGGACAAAAAATAAAGAAGAATCCTCTTTCTGGGGGAAAATCCCGCTGGATTTGTGAGGGAATCCTCTTTCTGTGAGAAAATTCCACTGGATTTGTAGGGACAATTCAGTCTATTTTTATGAGGGCTTACATTTTAGGGCACTGACGTGATCTGGATCTGGTTCATCGAGAGCACATCTATGCGGGCGTATCTATTAGTAATATTTTTTCCACTACTGTAAGCAGTGAGCTTTCAATACTGAACAGAAGCTTGCTTGCTTTTCAACATGCCAAGGGGCAGAAGTGATGGAGTTCAATTTCAAAGGAAGCCTCTGGTTACATGTCTATTCGTTATGTTGTTTTTAGCAGGTCTTCTTTTTGTCTATTATGGATCTTTCTTTGGGTCCGGAATGCATCTGAGTACTTCAACTCAAGTCGAAAGATCATCTAGAAAGCTTGGAGGGAATAAGGGTGACAATCATGATGAAGATAATGGATCAAATCTCCAGGAGGATATACTCATAAGGGAAAAAAAGAATACAGAGGGTGGCGAAGAAAGCGATCCCAAGCTTGAGAACGAGATCCCAAACGAAGAAAACGTCCAAATTACATTGAAAACCTTCCCTGAGTGCGACAGTAAGCACTCAGAGTTAATTCCATGCTTGGATCGGGATCTTATCTACCAATTAAAGCTTAAACTCGATTTGGGTCTTATGGAGCACTATGAAAGGCACTGCCCTCCTACAGAACGACGCTTTAATTGCCTGATCCCTCCACCGGAGGGCTATAAGGTTCCTATCAAATGGCCAGCAAGTAGGGATGAAGTATGGAAAGTGAATATACCTCATACACATCTGGCAGAGGAAAAATCAGATCAGAATTGGATGATAGTGAATGGAGATAAGATCAATTTCCCTGGTGGTGGTACTCATTTCCATAATGGAGCTGACAAGTACATTGCAGCCATTGCAGATATGCTGAAAATTCCGGGAGGGAATCTGAGTAATGGTGGCAAGATCAGAACAGTTTTGGATGTGGGTTGTGGAGTGGCCAGCTTTGGAGCATATCTCCTTCCTCTTGACATTATAGCTATGTCCCTTGCACCAAATGATGTGCATCAGAATCAGATTCAGTTTGCATTAGAGAGAGGAATACCTGCAACTCTTGGGGTTTTGGGAACAGAGAGATTGCCATATCCAAGCAGGTCATTTGAATTGGCTCACTGTTCTCGGTGTAGAATTGATTGGCTTCAGAGGGATGGCATCCTGCTGTTGGAGTTGGATAGGCTGCTGAGGCCAGGTGGCTATTTTGTATATTCTTCTCCTGAAGCATACATGCAAGATGAAGAAAATCTTCAGATATGGAATGCTATGAGTGATCTCGTGAAACGCATGTGCTGGAAAGTTGCCTCAAAAAGGAACCAGACTGTAATATGGGTCAAGCCTCTGACCAATGATTGTTACTTGAAAAGGGCTCCTGGCACCAAGCCACCACTTTGCAACTCAGAAGAAGACCCAGATGCGTCTTGGCACGTTTTAATGAAGGCATGCATTACGCGTTATTCAGATCAAATTCATAATGCAAAGGGGAGTCGGTTAGCACCTTGGCCAAAGCGGTTGACTGCTCCTCCACCTAGGCTGGTAGAACTTGGTATCAGTGAGGAAGATTTTGTGAAGGACACGAAGGCTTGGCGTGAAAGGGTTAATTCATATTGGAAGCATATGAAGTCCGAGATTGAGCATGATACTTTGAGGAATATCATGGATATGAATGCAAATTTAGGTGCATTTGGTGCTGCCCTTAAAGATAAGCCTGTATGGGTAATGAACGTTGTTCCTGAAAGCGGTCCAAACACATTAAAAGCCATTTATGACCGAGGCCTTATGGGTACTCTACATAACTGGTGTGAAGCATTTTCGGCTTACCCACGTACCTATGATTTACTTCATGCTTGGCATATTTTCTCGGATATCAATGAGCGAGGTTGTAGTATTGAAGATTTGCTTCTAGAGATGGATAGGATTCTCCGTCCGACTGGCTTTATCATTATCAGAGACAAGGCTGCTATTGTAAACTACATCATGAAATATTTGGCACCTTTGCGATGGGATTCGTGGTCTTCCAATGTAGAGCCCGAGTCAGACCCTTTATCTTCAGGAGACGAAATAGTACTAATGGCAAGAAAGCGATTATGGTTGCCTGGAGAAACCCATTAGCAATTTTCTTGTAAATAAGTCGTAGTCAATCTGTATAGTTGTTGAGACCAAACTAAGTATTCAGGCTTTAGCTGAAAGGGGAAGGTGCTTCTTTTTGGAAAATGTTTCTGCTGCAGTTTGATTTATGAGGGATACGTCCTCTTATTTTCTTTTAAACAAAGGAGAAAACTGCTTTTTGATATTACATAGTAATTGACAATGCAAGATAGCAACCAATTCCTAGATTTGCTGACATCTGCATTTCTATGAAAGTTTATCAAAATCTTAATGAACTTTTTATTATTCTTATTATTGAAAGTGAGATATTGTCACGTCTAAAC

Ace file of the UniGene sp_v1.1_unigene2847 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosylmethionine-dependent methyltransferase, putative	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	ankyrin protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	77%
Blast2go	nucleus	GO:0005634	Cellular Component	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKS3

Fln msg:

Fln protein: MPRGRSDGVQFQRKPLVTCLFVMLFLAGLLFVYYGSFFGSGMHLSTSTQVERSSRKLGGNKGDNHDEDNGSNLQEDILIREKKNTEGGEESDPKLENEIPNEENVQITLKTFPECDSKHSELIPCLDRDLIYQLKLKLDLGLMEHYERHCPPTERRFNCLIPPPEGYKVPIKWPASRDEVWKVNIPHTHLAEEKSDQNWMIVNGDKINFPGGGTHFHNGADKYIAAIADMLKIPGGNLSNGGKIRTVLDVGCGVASFGAYLLPLDIIAMSLAPNDVHQNQIQFALERGIPATLGVLGTERLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYMQDEENLQIWNAMSDLVKRMCWKVASKRNQTVIWVKPLTNDCYLKRAPGTKPPLCNSEEDPDASWHVLMKACITRYSDQIHNAKGSRLAPWPKRLTAPPPRLVELGISEEDFVKDTKAWRERVNSYWKHMKSEIEHDTLRNIMDMNANLGAFGAALKDKPVWVMNVVPESGPNTLKAIYDRGLMGTLHNWCEAFSAYPRTYDLLHAWHIFSDINERGCSIEDLLLEMDRILRPTGFIIIRDKAAIVNYIMKYLAPLRWDSWSSNVEPESDPLSSGDEIVLMARKRLWLPGETH*

Protein Length: 644

Fln nts: ATGGGGATGATGATGAATGGGGGCGGCATACTGATGGAATCCACTTCGTCTCCACTTCGTCTCCTCTGTCAGTCACTACTAATTTAATATTGTTGTTTAGTTGTTGAGAACTATCACTGTTCAGTTTCATTCACTGCTGCTGTTTTAGGTTTACATTGGATCGACTCCGTTGTTGGGTGCAGTGAAATCCGAGTCGGTTTGAGTTTGGCTCGCTCTTTCTCCTCCTTATAATTAATAAAAACAAACTTTACACTGTAAAAAGAAACTTTACTGTGTTGGGTTGGGTTGGTTTGGTACGGAAGTCGATTTTGAGAGTAAAAGCTCTATTTGGCTTTGTTAGAAACATTTGGTTTTTGCCATTACAGGTGATTCTTTATTGGGCCGATGATGGAGCATTGGAATCCGTTAGATAAATCGAAAGCCATGTTAGGTTATGCTGAAACCTGCAAGTTGCTCTAAACTACACATACTTTGGGTTTTGGCTATAGTCGATTTTTCATTTCATTAGGCTTCTAGCTGTCCGAATCTGAATCGACGACGCTCTAGAAATTTTGAACCTTCGGGCGTTTTGCTCTCTCTATCATTCGTGTTCACATTGGACAAAAAATAAAGAAGAATCCTCTTTCTGGGGGAAAATCCCGCTGGATTTGTGAGGGAATCCTCTTTCTGTGAGAAAATTCCACTGGATTTGTAGGGACAATTCAGTCTATTTTTATGAGGGCTTACATTTTAGGGCACTGACGTGATCTGGATCTGGTTCATCGAGAGCACATCTATGCGGGCGTATCTATTAGTAATATTTTTTCCACTACTGTAAGCAGTGAGCTTTCAATACTGAACAGAAGCTTGCTTGCTTTTCAAC_-_ATGCCAAGGGGCAGAAGTGATGGAGTTCAATTTCAAAGGAAGCCTCTGGTTACATGTCTATTCGTTATGTTGTTTTTAGCAGGTCTTCTTTTTGTCTATTATGGATCTTTCTTTGGGTCCGGAATGCATCTGAGTACTTCAACTCAAGTCGAAAGATCATCTAGAAAGCTTGGAGGGAATAAGGGTGACAATCATGATGAAGATAATGGATCAAATCTCCAGGAGGATATACTCATAAGGGAAAAAAAGAATACAGAGGGTGGCGAAGAAAGCGATCCCAAGCTTGAGAACGAGATCCCAAACGAAGAAAACGTCCAAATTACATTGAAAACCTTCCCTGAGTGCGACAGTAAGCACTCAGAGTTAATTCCATGCTTGGATCGGGATCTTATCTACCAATTAAAGCTTAAACTCGATTTGGGTCTTATGGAGCACTATGAAAGGCACTGCCCTCCTACAGAACGACGCTTTAATTGCCTGATCCCTCCACCGGAGGGCTATAAGGTTCCTATCAAATGGCCAGCAAGTAGGGATGAAGTATGGAAAGTGAATATACCTCATACACATCTGGCAGAGGAAAAATCAGATCAGAATTGGATGATAGTGAATGGAGATAAGATCAATTTCCCTGGTGGTGGTACTCATTTCCATAATGGAGCTGACAAGTACATTGCAGCCATTGCAGATATGCTGAAAATTCCGGGAGGGAATCTGAGTAATGGTGGCAAGATCAGAACAGTTTTGGATGTGGGTTGTGGAGTGGCCAGCTTTGGAGCATATCTCCTTCCTCTTGACATTATAGCTATGTCCCTTGCACCAAATGATGTGCATCAGAATCAGATTCAGTTTGCATTAGAGAGAGGAATACCTGCAACTCTTGGGGTTTTGGGAACAGAGAGATTGCCATATCCAAGCAGGTCATTTGAATTGGCTCACTGTTCTCGGTGTAGAATTGATTGGCTTCAGAGGGATGGCATCCTGCTGTTGGAGTTGGATAGGCTGCTGAGGCCAGGTGGCTATTTTGTATATTCTTCTCCTGAAGCATACATGCAAGATGAAGAAAATCTTCAGATATGGAATGCTATGAGTGATCTCGTGAAACGCATGTGCTGGAAAGTTGCCTCAAAAAGGAACCAGACTGTAATATGGGTCAAGCCTCTGACCAATGATTGTTACTTGAAAAGGGCTCCTGGCACCAAGCCACCACTTTGCAACTCAGAAGAAGACCCAGATGCGTCTTGGCACGTTTTAATGAAGGCATGCATTACGCGTTATTCAGATCAAATTCATAATGCAAAGGGGAGTCGGTTAGCACCTTGGCCAAAGCGGTTGACTGCTCCTCCACCTAGGCTGGTAGAACTTGGTATCAGTGAGGAAGATTTTGTGAAGGACACGAAGGCTTGGCGTGAAAGGGTTAATTCATATTGGAAGCATATGAAGTCCGAGATTGAGCATGATACTTTGAGGAATATCATGGATATGAATGCAAATTTAGGTGCATTTGGTGCTGCCCTTAAAGATAAGCCTGTATGGGTAATGAACGTTGTTCCTGAAAGCGGTCCAAACACATTAAAAGCCATTTATGACCGAGGCCTTATGGGTACTCTACATAACTGGTGTGAAGCATTTTCGGCTTACCCACGTACCTATGATTTACTTCATGCTTGGCATATTTTCTCGGATATCAATGAGCGAGGTTGTAGTATTGAAGATTTGCTTCTAGAGATGGATAGGATTCTCCGTCCGACTGGCTTTATCATTATCAGAGACAAGGCTGCTATTGTAAACTACATCATGAAATATTTGGCACCTTTGCGATGGGATTCGTGGTCTTCCAATGTAGAGCCCGAGTCAGACCCTTTATCTTCAGGAGACGAAATAGTACTAATGGCAAGAAAGCGATTATGGTTGCCTGGAGAAACCCATTAG___CAATTTTCTTGTAAATAAGTCGTAGTCAATCTGTATAGTTGTTGAGACCAAACTAAGTATTCAGGCTTTAGCTGAAAGGGGAAGGTGCTTCTTTTTGGAAAATGTTTCTGCTGCAGTTTGATTTATGAGGGATACGTCCTCTTATTTTCTTTTAAACAAAGGAGAAAACTGCTTTTTGATATTACATAGTAATTGACAATGCAAGATAGCAACCAATTCCTAGATTTGCTGACATCTGCATTTCTATGAAAGTTTATCAAAATCTTAATGAACTTTTTATTATTCTTATTATTGAAAGTGAGATATTGTCACGTCTAAAC

Fln Alignment:

sp_v1.1_unigene2847___MPRGRSDGVQFQRKPLVTCLFVMLFLAGLLFVYYGSFFGSGMHLSTSTQVERSSRKLGGNKGDNHDEDNGSNLQEDILIREKKNTEGGEESDPKLENEIPNEENVQITLKTFPECDSKHSELIPCLDRDLIYQLKLKLDLGLMEHYERHCPPTERRFNCLIPPPEGYKVPIKWPASRDEVWKVNIPHTHLAEEKSDQNWMIVNGDKINFPGGGTHFHNGADKYIAAIADMLKIPGGNLSNGGKIRTVLDVGCGVASFGAYLLPLDIIAMSLAPNDVHQNQIQFALERGIPATLGVLGTERLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXRPGGYFVYSSPEAYMQDEENLQIWNAMSDLVKRMCWKVASKRNQTVIWVKPLTNDCYLKRAPGTKPPLCNSEEDPDASWHVLMKACITRYSDQIHNAKGSRLAPWPKRLTAPPPRLVELGISEEDFVKDTKAWRERVNSYWKHMKSEIEHDTLRNIMDMNANLGAFGAALKDKPVWVMNVVPESGPNTLKAIYDRGLMGTLHNWCEAFSAYPRTYDLLHAWHIFSDINERGCSIEDLLLEMDRILRPTGFIIIRDKAAIVNYIMKYLAPLRWDSWSSNVEPESDPLSSGDEIVLMARKRLWLPGETH
B8LKS3______________MLRGRSDGVQVQRKPLVTCLCVMVFFVGLLFVYYGSFFGSRMH-----QVGRSSRKLGGNPGDNEDEENGSNLQEDILIREKRNTEDEEESDPKLENEIPNEENNQITLKTFPECDSRYSELIPCLDRNLIYQLKLKLELSLMEHYERHCPPTERRFNCLIPPPEGYKVPIKWPASRDEVWKVNIPHTHLAEEKSDQNWMIVNGDKINFPGGGTHFHNGADKYIAALADMLKISGGNLSNGGKIRTVLDVGCGVASFGAYLLPLDIMAMSLAPNDVHQNQIQFALERGIPATLGVLGTERLPYPSMSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYMQDEENLQIWNAMSDLVKRMCWKVASKRDQTVIWVKPLTNDCYLKRAPGTKPPLCNSEDDPDASWHVLMKACITPYSDKIHHAKGSGLAPWPKRLTAPPPRLVELGISEEDFVKDTKAWRQRVNSYWKHMKSEIEHDTLRNIMDMNANLGAFGAALKDKAVWVMNVVPENGPNTLKAIYDRGLMGTLHNWCEAFSTYPRTYDLLHAWNIFSDIDERGCSIEDLLLEMDRILRPTGFIIIRDKPAIVNYIMKYLAPLRWDSWSSNVEPESDPLSSGDEIVLMARKQLSLPGGSH

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
1116	16		83		0.999991
1272	10		90		0.90298
1277	10	90			0.90298
1312		88	11		0.923564
1323			11	88	0.923564
1327	88		11		0.923564
1329		11		88	0.923564
1487		90		10	0.90298
1488		90	10		0.90298
1491			10	90	0.90298
1497	85		14		0.993533
1498		85	14		0.993533
1499		85		14	0.993533
1503	80		20		0.995493
1504	20			80	0.995493
1506		80	20		0.995493
2874	33		66		1.0
2895			88	11	0.923564
2899	88	11			0.923564
2902	88	11			0.923564
2905	11		88		0.923564
2908		88	11		0.923564
2912	87	12			0.992554
2915			12	87	0.992554
2962		16		83	0.994512
3005	83	16			0.994512
3006		16	83		0.994512
3007		16		83	0.994512
3008		16		83	0.994512
3009	16	83			0.994512
3096	25	75			0.996473
3100	25	75			0.996473
3101		75		25	0.996473
3103	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2823	2837	CCAAC CCAAC CCAAC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain