SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2845

Length: 1206 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2845 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat family protein / protein kinase family protein	-	-	48%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	49%
Blast2go	protein	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	66%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	66%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	66%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	66%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	66%
Blast2go	Protein kinase-like domain	IPR011009	-	66%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	66%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9GQI1

Fln msg: your sequence is longer than subject: 361 - 307

Fln protein: MTHGSKSMVIVPNTTKSRAFTLEEMTTATQNFSHKIGQGGFGSVFFGRLEQGEDIAVKVLSVVSKQGVQEFLNEVELFSRVHHKNLVSLLGYCIESRELMLVYEHMSGGSLKDRLYGPIAEHSQLNWKTRLQIASDAAQGLEYLHIGCTPKIIHRDIKTANILLDRKFNGKLADFGLSRMTIDGEASYVITSVKGTLGYLDPAYFSTHMLTEKSDVYSFGVVLLEIICGRRPINVKLPGDQLNLIRWVTPYVEMDENPAKMEEIIDKRLGRNYDINSIIGVAKLAIRCVQPEPSSRPSVDEVVAKLKEAIKLEKDKDSLISEIDIEYGDLGASSACLSVDSSGLKEMDSAESSSKISKQR*

Protein Length: 362

Fln nts: AAAAGGAATCCAAACATGTCGTTGACCAAGGTCAGGAACACCTTGATTTTACGATTGTTCAT_-_ATGACCCACGGCAGTAAGTCCATGGTTATAGTGCCCAATACAACAAAGTCCCGGGCATTTACTCTAGAAGAGATGACGACAGCCACACAAAACTTCAGTCACAAGATTGGTCAAGGGGGTTTTGGATCGGTTTTCTTTGGTAGATTGGAGCAAGGAGAAGATATAGCGGTCAAAGTGCTCTCCGTCGTCTCCAAACAAGGAGTTCAGGAGTTCCTTAATGAGGTTGAGCTTTTCTCTAGAGTCCATCATAAGAACTTGGTGTCATTGCTAGGATACTGCATTGAATCAAGAGAACTTATGCTTGTCTACGAGCACATGTCTGGAGGGTCCTTAAAGGATCGCCTATATGGTCCTATTGCAGAACATTCTCAACTAAATTGGAAAACCAGGCTCCAAATAGCTTCAGATGCAGCTCAGGGACTGGAATACCTCCATATAGGTTGCACTCCAAAGATAATTCACAGGGATATCAAGACGGCCAACATTCTTCTAGACAGGAAGTTCAATGGAAAACTCGCCGATTTCGGCCTTTCAAGAATGACAATTGATGGGGAGGCTTCTTATGTTATTACTTCAGTGAAAGGAACCTTAGGATACCTGGATCCAGCGTATTTTAGCACTCACATGTTGACGGAGAAGAGCGATGTATATAGTTTTGGAGTTGTTTTGCTGGAGATCATCTGCGGTAGACGGCCCATAAATGTAAAATTACCTGGAGACCAACTGAACCTTATTCGATGGGTGACACCGTATGTGGAGATGGACGAAAATCCTGCAAAAATGGAGGAAATCATAGACAAGAGGTTGGGTAGAAATTACGACATCAACTCCATCATTGGGGTTGCCAAATTAGCGATCCGGTGTGTTCAGCCCGAACCATCCTCTAGGCCGAGCGTAGATGAGGTAGTGGCAAAGCTCAAAGAGGCTATCAAACTCGAGAAGGATAAGGATTCCCTAATTTCGGAAATTGATATTGAATACGGAGATTTAGGTGCGAGCTCGGCCTGTTTATCTGTAGATTCCAGTGGACTCAAGGAAATGGACTCTGCTGAAAGCAGCTCAAAAATATCTAAACAACGATGA___TCATATGTTCACGAGATTGATATCAATATCGATTATTAGTAATGAAAGATATTTAAGGTTT

Fln Alignment:

sp_v1.1_unigene2845___NTTKSRAFTLEEMTTATQNFSHKIGQGGFGSVFFGRLEQGEDIAVKVLSVVSKQGVQEFLNEVELFSRVHHKNLVSLLGYCIESRELMLVYEHMSGGSLKDRLYGPIAEHSQLNWKTRLQIASDAAQGLEYLHIGCTPKIIHRDIKTANILLDRKFNGKLADFGLSRMTIDGEASYVITSVKGTLGYLDPAYFSTHMLTEKSDVYSFGVVLLEIICGRRPINVKLPGDQLNLIRWVTPYVEMDENPAKMEEIIDKRLGRNYDINSIIGVAKLAIRCVQPEPSSRPSVDEVVAKLKEAIKLE
B9GQI1______________NWNAARIFSYKEIKAATNNFKEVIGRGSFGSVYLGKLSDGKLVAVKVRFDKSQLGADSFINEVYLLSQVRHQNLVCLEGFCHESKQQILVYEYLPGGSLADQLYGPNSQKVSLSWVRRLKIAADAAKGLDYLHNASDPRIIHRDVKCSNILLDKEMNAKVCDFGLSKQVMQADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLRRSGTPDSFNLVLWAKPYLQ-----AGALEIVDENLKGTFDVESMRKAAIVAVRSVERDASQRPTIAEVLAELKEAYSIQ

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
163		90		10	0.90298
220	11		88		0.923564
276		16	83		0.994512
285		83		16	0.994512
306		66	33		1.0
330	83			16	0.994512
392		80		20	0.995493
797	20	80			0.995493
865	80		20		0.995493
920			20	80	0.995493
955		20	80		0.995493
956		20	80		0.995493
957	80	20			0.995493
958		20	80		0.995493
960		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain