SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2841

Length: 1368 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2841 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	79%
Blast2go	protein	-	-	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribonuclease H-like domain	IPR012337	-	0.0	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HAL0

Fln msg: your sequence is shorter than subject: 311 - 762

Fln protein: CVYVHAMMEDVVNSVRALQLTVLDDAYKVIYAEDPHGREVADMIRDMRFWNELDAVLSLVKLVKMMIQEIEVERPLVGQCLPLWDDLRTKVKDWCAKYNVDEGPVEEIIEKRFAKNYHPAWSAAFILDPLYLLRDNSGKYLPPFKCLTTEQEKDVDRLITRLVSREEAHIALMELMKWRAEGLDPLYAQAVQVKQRDPVTGKMKIANPQSSRLVWETCLSEFKALGKVAVRLIFLHATSCGLKCNWSFMRWVYAHGHSRTAMDKAQKMIFIASHARLERRDFVNEEEKDAELFANGEDDVLNEVFSDPAM*

Protein Length: 312

Fln nts: ATTGCGTGTATGTTCATGCGATGATGGAAGATGTTGTGAATTCGGTGCGGGCATTGCAGCTGACGGTGTTGGACGATGCCTATAAGGTTATCTATGCAGAGGATCCACATGGAAGAGAGGTTGCAGACATGATCAGGGATATGAGATTTTGGAATGAATTGGATGCAGTGTTGTCATTGGTGAAGCTAGTGAAGATGATGATCCAGGAGATTGAGGTTGAGAGGCCTTTGGTGGGGCAATGCCTTCCTCTTTGGGATGATCTGAGGACGAAAGTTAAGGATTGGTGTGCGAAATACAATGTAGATGAAGGGCCCGTCGAAGAGATCATTGAGAAGAGGTTTGCGAAGAATTATCATCCGGCTTGGTCGGCTGCTTTTATTCTAGATCCTCTGTATCTCCTCAGGGACAACAGTGGGAAATACTTGCCCCCATTTAAATGCTTGACAACAGAACAGGAAAAGGATGTGGATAGGCTGATTACGCGGTTGGTATCCAGAGAAGAAGCACATATTGCACTCATGGAACTCATGAAATGGCGCGCTGAGGGCCTAGACCCATTGTATGCTCAGGCAGTTCAGGTAAAACAACGAGACCCTGTAACAGGTAAAATGAAAATTGCCAATCCTCAAAGCAGTAGGCTTGTGTGGGAGACATGCTTGAGCGAGTTTAAAGCCCTTGGGAAAGTCGCTGTTCGTTTGATATTCCTTCATGCAACTTCATGTGGTCTAAAGTGTAATTGGTCATTCATGAGGTGGGTGTATGCTCATGGGCATTCACGGACAGCAATGGATAAAGCTCAGAAGATGATTTTTATTGCCTCACATGCGAGGCTTGAGCGCAGAGACTTTGTTAATGAAGAAGAGAAGGATGCAGAGCTTTTTGCCAATGGTGAGGATGATGTCCTCAACGAGGTTTTCTCAGATCCGGCAATGTAA___CATTTTAAATGTAGGAGTTTAGGATTGGATTCTTTGTACTGTTCTCTTTGCCTCTGTTACCCTTTCTAGGGTTTTGGTTTCAGGGGGAGGAAGAAAAGAGCAAGGAGGAGCAACCCTATTAGTTTCTCAAGCTCTACTATTGATCTTGTACATGAGTTCTGTTGTTAATACTCACACAGCCTTTTCATAACTGATTTTGTTCGTTGAGGCAGTGCAGCTGCAGATCCTGGTCTCATAGATTTAGGGTTGTTATATAACTTCTACCTTTTCTATTAGATCGGCACACTCATTACTTTCTCTCTTGTAAGGGAATTTAACAATAGAAGTGGAGCTATTCTTGTGGTATGAACTATTTTTTTGTACATCTGCAATTTTCCAATGCATGGGATTGTCTAAGCAACCATAATTCTCCGTTCATAAATAGAATAAATTG

Fln Alignment:

sp_v1.1_unigene2841___VYVHAMMEDVVNSVRALQLTVLDDAYKVIYAEDPHGREVADMIRDMRFWNELDAVLSLVKLVKMMIQEIEVERPLVGQCLPLWDDLRTKVKDWCAKYNVDEGPVEEIIEKRFAKNYHPAWSAAFILDPLYLLRDNSGKYLPPFKCLTTEQEKDVDRLITRLVSREEAHIALMELMKWRAEGLDPLYAQAVQVKQRDPVTGKMKIANPQSSRLVWETCLSEFKALGKVAVRLIFLHATSCGLKCNWSFMRWVYAHGHSRTAMDKAQKMIFIASHARLERRDFVNEEEKDAELF--ANGEDDVLNEVFSD
F6HAL0______________VHVYAMLEDIMSNAQVLQLVVMDESYKVICVEDPAAREVADMIQDVRFWNELDAVHSLVKLIREMAQEIEVERPLVGQCLPLWEELRTKVREWCVKFNIDEEPVEKIVEKRFRKNYHPAWSAAFILDPFYLMRDTSGKYLPPFKCLTHEQEKDVDKLITRLVTREEAHIALMELMKWRSEGLDPLYAQAVQVKQQDPVTGKMKIANPQSSRLVWETCLKDFKSLGKVAVRLIFLHATACGFKCNWSFMRWVCVHGHSRVGLDRAQKMIFIAAHAKLERRDFSSEEEKDAELFAMANGESDMLNEVFAD

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
792		11		88	0.923564
882	85		14		0.993533
889		14		85	0.993533
898		14		85	0.993533
995	75		25		0.996473
996	25		75		0.996473
1016	83		16		0.994512
1332			33	66	0.997452
1334		66	33		0.997452
1339	66	33			0.997452
1342	33			66	0.997452
1343		66	33		0.997452
1344			33	66	0.997452
1351	66		33		0.997452
1353	33	33		33	0.997753
1355		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain