SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2828

Length: 1595 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2828

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	D-glycerate 3-kinase, chloroplast precursor, putative (EC:2.7.1.31)	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glycerate kinase.	EC:2.7.1.31	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Glycine, serine and threonine metabolism	00260	78%
Blast2go	Glycerolipid metabolism	00561	78%
Blast2go	Glyoxylate and dicarboxylate metabolism	00630	78%
Blast2go	Methane metabolism	00680	78%
Blast2go	Metabolic pathways	01100	78%

Source	GOs	Term	Type	Identity
Blast2go	photorespiration	GO:0009853	Biological Process	78%
Blast2go	glycerate kinase activity	GO:0008887	Molecular Function	78%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	78%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL83

Fln msg:

Fln protein: MIQLLRLGNPSALNLNPKADNRGIPPFKFVRNVADNKFVNRGFTTASSSSRVVEFGSDRKRRLMSGQMLAMALPSKTASSAMVSSVADLYEFICRGPLLEKMGSNLQEVADTIDRWLECGIQLCRLLGFDELLLTEAQKVRVYHYYVPVYLWCERELLQHRAKFKDDADEIPPLVFGISAPQGSGKTTLVYALDYLFNVAGRKAASISIDDFYLTAADQANLSGEYAGNTLLELRGNAGSHDLAFGTDTLKNLCSLTKEGAKAKIPRYDKSAYNGRGDRADPSTWPEIEGPLEVILLEGWMLGFKPLSSEVVKAVDPQLEAVNRNLESYYDAWEMFIGSWIIIKVDDTQWVYEWRLQAEIAMREDGKPGMSDEEVADFVSRYMPAYKAYLPVLYSDGPRGSKPEHTLVVEVDENRNPLG*

Protein Length: 421

Fln nts: ATGGTAATGGTTTAAG_-_ATGATCCAGTTACTGCGATTGGGCAACCCAAGTGCCCTTAATTTGAACCCCAAGGCCGACAATCGGGGTATCCCGCCCTTCAAATTCGTCCGAAATGTAGCGGACAACAAATTCGTGAACCGCGGGTTCACTACCGCGAGTTCGAGTTCAAGGGTGGTGGAATTTGGATCTGATAGGAAGCGCCGGCTAATGTCGGGGCAAATGTTAGCGATGGCATTACCGTCAAAGACTGCATCCTCTGCAATGGTATCCTCGGTGGCTGACCTTTATGAATTCATATGCAGAGGCCCCCTGCTGGAAAAGATGGGGTCGAATCTCCAGGAGGTCGCTGATACTATTGACCGGTGGCTTGAGTGCGGGATCCAGCTCTGCCGCCTTCTCGGGTTTGATGAGCTTCTTCTGACAGAGGCGCAGAAGGTTAGGGTTTATCATTATTATGTACCAGTCTATTTATGGTGCGAGCGTGAGCTGTTGCAGCACAGGGCCAAGTTCAAAGATGATGCAGATGAAATTCCTCCCCTTGTGTTTGGCATCAGTGCACCTCAGGGTAGTGGCAAGACAACTCTAGTGTATGCACTTGATTATCTCTTCAACGTAGCAGGCAGAAAGGCTGCCTCGATATCCATTGATGACTTCTATTTAACAGCAGCTGATCAGGCAAATCTCTCTGGTGAATATGCAGGAAATACCCTATTGGAGTTACGGGGTAACGCTGGAAGCCATGATTTAGCATTTGGAACAGATACTTTAAAGAATCTGTGTAGCTTGACAAAAGAAGGTGCAAAGGCCAAGATACCACGGTATGATAAGTCAGCTTACAACGGGCGTGGGGACAGGGCAGATCCTTCTACATGGCCTGAAATTGAAGGGCCATTGGAGGTGATTTTGCTTGAAGGATGGATGCTTGGTTTTAAGCCACTATCAAGTGAAGTTGTGAAAGCTGTTGATCCACAGTTGGAAGCTGTAAACAGAAATCTTGAATCTTATTACGATGCATGGGAAATGTTTATTGGTTCGTGGATAATCATCAAAGTTGATGATACACAGTGGGTATATGAGTGGCGTTTGCAGGCTGAGATTGCAATGAGGGAAGATGGCAAGCCTGGAATGTCGGATGAAGAGGTTGCCGACTTTGTCTCAAGATATATGCCAGCATATAAAGCATATCTGCCTGTTCTGTACTCTGATGGACCAAGGGGTTCAAAGCCTGAACATACTCTTGTTGTTGAAGTTGATGAAAATCGAAATCCACTTGGTTGA___TACTTGTTCTGAACTCAAAGATGAAGAAGCATCATTGGGACTTAATTGTGCGCCATCCTTCTGCCAACAACCGACACAAAAATGGTACCGAGGGTTAATTTATCTCGGATTGTCTCAAGTTTTACCAGTCCAGTGTGTTGGTGTACAAAATATTTGTACTTTATATTAGAAAATAACTGGAAGCATTGATTTCGATTTTTTCTGCAGACAAAAATGATAGCGTTCACATAAACATCTAAAGTTCTGTCATGCTAGATATTCAGAAGAACACTCTATTTATCTCGGACATAGAATTGGAGTTGGGGAAGTGATAACAAGG

Fln Alignment:

sp_v1.1_unigene2828___MIQLLRLGNPSALNLNPKADNRGIPPFKFVRNVA----DNKFVNRGFTTASSSSRVVEFGSDRKRRLMSGQMLAMALPSKTASSAMVSSVADLYEFICRGPLLEKMGSNLQEVADTIDRWLECGIQLCRLLGFDELLLTEAQKVRVYHYYVPVYLWCERELLQHRAKFKDDADEIPPLVFGISAPQGSGKTTLVYALDYLFNVAGRKAASISIDDFYLTAADQANLSGEYAGNTLLELRGNAGSHDLAFGTDTLKNLCSLTKEGAKAKIPRYDKSAYNGRGDRADPSTWPEIEGPLEVILLEGWMLGFKPLSSEVVKAVDPQLEAVNRNLESYYDAWEMFIGSWIIIKVDDTQWVYEWRLQAEIAMREDGKPGMSDEEVADFVSRYMPAYKAYLPVLYSDGPRGSKPEHTLVVEVDENRNPLG
B8LL83______________MIQLLRLGTPSALNLNPKASNRSIQPFKFYRNVAVNGADNTFVDRGSNTAGSSSRVAEFGFGRKRWMMSGKMLAMALPSNAASSAMVSSVADLYEFICRGPLLEKTGSSVQEVANTIDQWLECGIQLCRLLGFNELLLTEAQKVRVYHYYVPVYLWCERELLQHRAKFKDDAEEIPPFVFGVSAPQGSGKTTLVYALDHLFNITGRKAASISIDDFYLTATDQAKLAGENAGNTLLELRGNAGSHDLAFGADTLKKLCSLTKTGTKAKIPRYDKSAYSGRGDRGDPFTWPEIEGPLDVILLEGWMLGFKPLSSEVVKAVDPQLEAVNRNLEAYYDAWEKFIGSWIIIKVDDTHWVYEWRLQAEIAMRKEGKPGMSDEQVADFVSRYMPAYKAYLPVLYSDGPRGSNPEHTLIVEVDEHRNPLG

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
630	33		66		0.997452
631		66		33	0.997452
632		66	33		0.997452
633			33	66	0.997452
634		66	33		0.997452
789	83			16	0.994512
790	83			16	0.994512
791	83	16			0.994512
793	83	16			0.994512
797	16			83	0.994512
799		83	16		0.994512
801	83	16			0.994512
1193		11		88	1.0
1194		88	11		1.0
1197	3			88	0.999079
1200		7		92	0.999664
1201		88		11	1.0
1204	88	3	7		0.999079
1205		7		92	0.999664
1206			92	8	0.999718
1208	88			8	0.999262
1213		9	85	4	0.999726
1214		4	85	9	0.999726
1215	4	9	85		0.999726
1216	9		90		0.999872
1290	81		18		1.0
1348	41	58			1.0
1481		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain