SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2827

Length: 3115 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2827
ATGGGGCCGGAGGTCCGGATGTTTTGAAATTTGGTCTCCCTTGGCTGTCACTGTAATTCTATACCGGTTCAACTGTCAGTGGAATCCAATACGGGGGTACCGGCGATCCTTTGAAACAGCGGTAACGACTAATTCCCCGAGCGTCCGCTGTTGTGTTGCCGAAGATGGACGATAGTCTGTATGACGAATTCGGGAACTATATCGGTCCAGAGATCGATTCCGACGAGGAGTCGGAGCAGGATGAAGAACAGGACGATGTTCGCATGCACGACCGCGACGAAGAAGATGCAAATGAGGATGGAGACGCCGCATGGCTCGCTCGAACCCACGGCCCCCTCGACCACCACAATCAACAAGGCCCCGACGACGATGACGACGTCGACATGGAAGGCCAAGTGGTTCTTGCAGAGGACAAGAAATACTATCCGACTGCAGAGGAAGTCTATGGCGAGGGCGTCGAAACTCTGGTCATGGAGGAGGACGCCCAGCCTTTGGAGCAACCCATCGTCAAGCCCGTCAGAAACATTAAATTCGAAGTGGGTGTCAAGGACTCCACCACATATGTTTCCACTGATTTCTTGCTGGGCTTGATGTCAAACCCTACGCTAGTCAGAAATGTGGCACTTGTCGGGCACCTTCAGCACGGAAAAACTCTGTTTATGGACATGCTGATTGAGCAAACCCATCATATCGCGACATTTGATGTTAACAGCGAGAAGCACATGCGGTATACCGACACCAGGGTTGATGAGCAGGAGAGGCAGATTTCCATCAAGGCAGTGCCCATGTCTCTCGTATTGGAGGACGGCAATGCCAAGTCTTATCTCTGTAATATTATGGATACCCCAGGCCATGTGAACTTTTCCGACGAGATGACTGCAGCTCTCAGACTTGCAGACGGGGCCGTCTTGGTCGTTGACGCTGCCGACGGCGTGATGGTAAATACAGAGAGGGCTATACGTCATGCTATCCAGGAAAGGCTTCCAATAGTTGTTGTTATCAACAAGGTGGACAGGCTGATAACAGAGCTAAAATTGCCACCGACAGATGCTTATCACAAATTGAAGCATACAATAGAAGAAGTCAATAACTTGATTACTGCATTTTCAACTGGAGCGGGGGGGTCTCAGTTGGTTGATCCAGCAATTGGGAATGTCTGTTTTGCGAGTGCGTCTGCAGGGTGGTCTTTTACTTTACAATCATTTGCCAAGATTTATGTGAAACTCCATGGAATTCCATTTGATTCAGCTCGTTTTGCATCCCGCCTTTGGGGGGACCTGTATTTTCAACCAGATACTAGGACTTTTAAAAAGAGGCCTCCCCCAACTGGAGGTGAGAGGTCATTTGTGCAGTTTGTTCTTGAACCTTTATATAAAATTTACAGCCAAGTCATTGGTGAACACAGGAAGAGTGTCGAAACTACCCTAGCAGAGTTAGGAGTGACACTTAGCAATGCTGCATATAAACTTAATGTAAGGTCCTTGCTGAGGTTATCTTGCAGCTCTATCTTTGGGTCTGCAACTGGCTTCACGGACATGGTGGTGCAACATATTCCCTCTGCAAAGGATGCTGCAGCTAAGAAAATAGAGCATATATACACAGGTCCCCAAGACACACCGCTTGTCCAAGCTATGAAAGATTGTGCTCCTGAAGGCCCACTTATGGTGAATGTAACTAAATTATATCCAAAATCTGATTGCAGTGTTTTTGATTCATTTGGTAGAGTCTATAGTGGCACAATCCAAACAGGCCAAACTGTTCGGGTACTTGGAGAAGGGTATTCTCCTGATGATGAGGAGGACATGGCAGTCAAGGAAGTAACTAAACTGTGGGTCTACCAAGCTCGATATCGAATTCCTATAAGCAAAGCACCTGCTGGATCTTGGGTTCTAATAGAGGGTGTAGATGCTTCAATTATGAAGACAGCAACACTGTGTCCGGAGTATCTTGATGAAGATGTATTTATTTTCCGTCCTTTACGCTTTAACACATTATCAGTTGTCAAAACAGCAACTGAACCTCTGAACCCAAGTGAATTGCCGAAGATGGTGGAAGGTCTTCGTAAAATTAGTAAGAGTTATCCATTGGCCATTACAAAGGTTGAGGAGTCGGGGGAACACACCATTCTGGGGACTGGGGAGATCTATTTGGACTCTATTATGAAGGACCTTAGAGAGCTCTATTCAGAAGTAGAAGTGAAGGTGGCAGATCCAGTAGTTTCCTTTTGTGAAACAGTAGTGGAGTCATCCTCGATGAAATGTTTTGCTGAAACTCCAAATAAGAAAAATAAGATTACTATGCTTGCAGAACCACTAGAGAAGGGTTTGGCAGAGGATATAGAGAATGGTGTGGTGAGCATAGATTGGCCACGTAAGAAGTTGGGTGACTTTTTTCAGACTAGATATGATTGGGATTTACTTGCAGCTCGATCAATATGGGCATTTGGACCAGATAAGCAGGGTCCAAACATTCTTCTAGATGATACACTTCCTAGTGAAGTTGACAAAAACTTGCTGAATTCTGTAAAGGATTCCATTGTGCAAGGATTTCAATGGGGTGCTCGAGAGGGACCTCTTTGTGATGAACCTATTCGCAATGTGAAGTTCAAAATTCTGGATGCAACAATAGCACCAGAGCCCTTGCACCGTGGTGGTGGTCAGATAATACCTACTGCGAGACGAGTTGCTTATTCAGCTTTTCTAATGGCAAACCCACATTTAATGGAGCCGGTGTATTATGTAGAGATCCAAACTCCTGCTGACTGTATTTCTGCAATATATACAGTGCTGTCTCGTAGAAGAGGTCATGTCACAGCTGATATAGCAAAGCCTGGGACACCAGCTTATATTGTTAAGGCTTTTTTACCTGTCATTGAATCCTTTGGTTTTGAGACAGACCTTAGGTACCATACACAGGGGCAAGCATTTTGCCTATCTGTATTTGACCATTGGTCTATAGTGCCAGGAGATCCACTGGACAAGTCTGTTGTTTTGCGACCATTAGAGCCTGCACCTGTTCAGCATCTTGCACGTGAGTTCATGGTGAAAACCAGGCGCAGAAAGGGTATGAGTGAGGATGTGAGTATCAACAAATTTTTCGATGATCCTATGTTACT

Ace file of the UniGene sp_v1.1_unigene2827

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	116 kD U5 small nuclear ribonucleoprotein component, putative; K12852 116 kDa U5 small nuclear ribonucleoprotein component	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	elongation factor tu gtp-binding domain protein 2	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	regulation of embryo sac egg cell differentiation	GO:0045694	Biological Process	86%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	86%
Blast2go	binding	GO:0005488	Molecular Function	86%
Blast2go	nucleolus	GO:0005730	Cellular Component	86%
Blast2go	nuclear speck	GO:0016607	Cellular Component	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	86%
Blast2go	Protein synthesis factor, GTP-binding	IPR000795	-	86%
Blast2go	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	86%
Blast2go	Small GTP-binding protein domain	IPR005225	-	86%
Blast2go	Translation elongation factor EFG/EF2, domain IV	IPR005517	-	86%
Blast2go	Translation elongation/initiation factor/Ribosomal, beta-barrel	IPR009000	-	86%
Blast2go	Elongation factor G/III/V	IPR009022	-	86%
Blast2go	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	86%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	86%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACX5

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is longer than subject: 983 - 267

Fln protein: MDDSLYDEFGNYIGPEIDSDEESEQDEEQDDVRMHDRDEEDANEDGDAAWLARTHGPLDHHNQQGPDDDDDVDMEGQVVLAEDKKYYPTAEEVYGEGVETLVMEEDAQPLEQPIVKPVRNIKFEVGVKDSTTYVSTDFLLGLMSNPTLVRNVALVGHLQHGKTLFMDMLIEQTHHIATFDVNSEKHMRYTDTRVDEQERQISIKAVPMSLVLEDGNAKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLVVDAADGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPTDAYHKLKHTIEEVNNLITAFSTGAGGSQLVDPAIGNVCFASASAGWSFTLQSFAKIYVKLHGIPFDSARFASRLWGDLYFQPDTRTFKKRPPPTGGERSFVQFVLEPLYKIYSQVIGEHRKSVETTLAELGVTLSNAAYKLNVRSLLRLSCSSIFGSATGFTDMVVQHIPSAKDAAAKKIEHIYTGPQDTPLVQAMKDCAPEGPLMVNVTKLYPKSDCSVFDSFGRVYSGTIQTGQTVRVLGEGYSPDDEEDMAVKEVTKLWVYQARYRIPISKAPAGSWVLIEGVDASIMKTATLCPEYLDEDVFIFRPLRFNTLSVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGEIYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMLAEPLEKGLAEDIENGVVSIDWPRKKLGDFFQTRYDWDLLAARSIWAFGPDKQGPNILLDDTLPSEVDKNLLNSVKDSIVQGFQWGAREGPLCDEPIRNVKFKILDATIAPEPLHRGGGQIIPTARRVAYSAFLMANPHLMEPVYYVEIQTPADCISAIYTVLSRRRGHVTADIAKPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWSIVPGDPLDKSVVLRPLEPAPVQHLAREFMVKTRRRKGMSEDVSINKFFDDPML

Protein Length: 984

Fln nts: ATGGGGCCGGAGGTCCGGATGTTTTGAAATTTGGTCTCCCTTGGCTGTCACTGTAATTCTATACCGGTTCAACTGTCAGTGGAATCCAATACGGGGGTACCGGCGATCCTTTGAAACAGCGGTAACGACTAATTCCCCGAGCGTCCGCTGTTGTGTTGCCGAAG_-_ATGGACGATAGTCTGTATGACGAATTCGGGAACTATATCGGTCCAGAGATCGATTCCGACGAGGAGTCGGAGCAGGATGAAGAACAGGACGATGTTCGCATGCACGACCGCGACGAAGAAGATGCAAATGAGGATGGAGACGCCGCATGGCTCGCTCGAACCCACGGCCCCCTCGACCACCACAATCAACAAGGCCCCGACGACGATGACGACGTCGACATGGAAGGCCAAGTGGTTCTTGCAGAGGACAAGAAATACTATCCGACTGCAGAGGAAGTCTATGGCGAGGGCGTCGAAACTCTGGTCATGGAGGAGGACGCCCAGCCTTTGGAGCAACCCATCGTCAAGCCCGTCAGAAACATTAAATTCGAAGTGGGTGTCAAGGACTCCACCACATATGTTTCCACTGATTTCTTGCTGGGCTTGATGTCAAACCCTACGCTAGTCAGAAATGTGGCACTTGTCGGGCACCTTCAGCACGGAAAAACTCTGTTTATGGACATGCTGATTGAGCAAACCCATCATATCGCGACATTTGATGTTAACAGCGAGAAGCACATGCGGTATACCGACACCAGGGTTGATGAGCAGGAGAGGCAGATTTCCATCAAGGCAGTGCCCATGTCTCTCGTATTGGAGGACGGCAATGCCAAGTCTTATCTCTGTAATATTATGGATACCCCAGGCCATGTGAACTTTTCCGACGAGATGACTGCAGCTCTCAGACTTGCAGACGGGGCCGTCTTGGTCGTTGACGCTGCCGACGGCGTGATGGTAAATACAGAGAGGGCTATACGTCATGCTATCCAGGAAAGGCTTCCAATAGTTGTTGTTATCAACAAGGTGGACAGGCTGATAACAGAGCTAAAATTGCCACCGACAGATGCTTATCACAAATTGAAGCATACAATAGAAGAAGTCAATAACTTGATTACTGCATTTTCAACTGGAGCGGGGGGGTCTCAGTTGGTTGATCCAGCAATTGGGAATGTCTGTTTTGCGAGTGCGTCTGCAGGGTGGTCTTTTACTTTACAATCATTTGCCAAGATTTATGTGAAACTCCATGGAATTCCATTTGATTCAGCTCGTTTTGCATCCCGCCTTTGGGGGGACCTGTATTTTCAACCAGATACTAGGACTTTTAAAAAGAGGCCTCCCCCAACTGGAGGTGAGAGGTCATTTGTGCAGTTTGTTCTTGAACCTTTATATAAAATTTACAGCCAAGTCATTGGTGAACACAGGAAGAGTGTCGAAACTACCCTAGCAGAGTTAGGAGTGACACTTAGCAATGCTGCATATAAACTTAATGTAAGGTCCTTGCTGAGGTTATCTTGCAGCTCTATCTTTGGGTCTGCAACTGGCTTCACGGACATGGTGGTGCAACATATTCCCTCTGCAAAGGATGCTGCAGCTAAGAAAATAGAGCATATATACACAGGTCCCCAAGACACACCGCTTGTCCAAGCTATGAAAGATTGTGCTCCTGAAGGCCCACTTATGGTGAATGTAACTAAATTATATCCAAAATCTGATTGCAGTGTTTTTGATTCATTTGGTAGAGTCTATAGTGGCACAATCCAAACAGGCCAAACTGTTCGGGTACTTGGAGAAGGGTATTCTCCTGATGATGAGGAGGACATGGCAGTCAAGGAAGTAACTAAACTGTGGGTCTACCAAGCTCGATATCGAATTCCTATAAGCAAAGCACCTGCTGGATCTTGGGTTCTAATAGAGGGTGTAGATGCTTCAATTATGAAGACAGCAACACTGTGTCCGGAGTATCTTGATGAAGATGTATTTATTTTCCGTCCTTTACGCTTTAACACATTATCAGTTGTCAAAACAGCAACTGAACCTCTGAACCCAAGTGAATTGCCGAAGATGGTGGAAGGTCTTCGTAAAATTAGTAAGAGTTATCCATTGGCCATTACAAAGGTTGAGGAGTCGGGGGAACACACCATTCTGGGGACTGGGGAGATCTATTTGGACTCTATTATGAAGGACCTTAGAGAGCTCTATTCAGAAGTAGAAGTGAAGGTGGCAGATCCAGTAGTTTCCTTTTGTGAAACAGTAGTGGAGTCATCCTCGATGAAATGTTTTGCTGAAACTCCAAATAAGAAAAATAAGATTACTATGCTTGCAGAACCACTAGAGAAGGGTTTGGCAGAGGATATAGAGAATGGTGTGGTGAGCATAGATTGGCCACGTAAGAAGTTGGGTGACTTTTTTCAGACTAGATATGATTGGGATTTACTTGCAGCTCGATCAATATGGGCATTTGGACCAGATAAGCAGGGTCCAAACATTCTTCTAGATGATACACTTCCTAGTGAAGTTGACAAAAACTTGCTGAATTCTGTAAAGGATTCCATTGTGCAAGGATTTCAATGGGGTGCTCGAGAGGGACCTCTTTGTGATGAACCTATTCGCAATGTGAAGTTCAAAATTCTGGATGCAACAATAGCACCAGAGCCCTTGCACCGTGGTGGTGGTCAGATAATACCTACTGCGAGACGAGTTGCTTATTCAGCTTTTCTAATGGCAAACCCACATTTAATGGAGCCGGTGTATTATGTAGAGATCCAAACTCCTGCTGACTGTATTTCTGCAATATATACAGTGCTGTCTCGTAGAAGAGGTCATGTCACAGCTGATATAGCAAAGCCTGGGACACCAGCTTATATTGTTAAGGCTTTTTTACCTGTCATTGAATCCTTTGGTTTTGAGACAGACCTTAGGTACCATACACAGGGGCAAGCATTTTGCCTATCTGTATTTGACCATTGGTCTATAGTGCCAGGAGATCCACTGGACAAGTCTGTTGTTTTGCGACCATTAGAGCCTGCACCTGTTCAGCATCTTGCACGTGAGTTCATGGTGAAAACCAGGCGCAGAAAGGGTATGAGTGAGGATGTGAGTATCAACAAATTTTTCGATGATCCTATGTTACT

Fln Alignment:

sp_v1.1_unigene2827___AETPNKKNKITMLAEPLEKGLAEDIENGVVSIDWPRKKLGDFFQTRYDWDLLAARSIWAFGPDKQGPNILLDDTLPSEVDKNLLNSVKDSIVQGFQWGAREGPLCDEPIRNVKFKILDATIAPEPLHRGGGQIIPTARRVAYSAFLMANPHLMEPVYYVEIQTPADCISAIYTVLSRRRGHVTADIAKPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWSIVPGDPLDKSVVLRPLEPAPVQHLAREFMVKTRRRKGMSEDVSINKFFDDPM
D5ACX5______________SKSPNKHNRLYFEARPLEEGLAEAIDDGRIGPKDDPKARAKILSEEFGWDKDLAKKIWCFGPETTGPNLVVDMCKGVQY----LNEIKDSVVAAFQWASKEGALAEENMRGICFEVCDVVLHTDAIHRGGGQIIPTARRVMYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRQGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMGSDPLETG------------SQAGQLVTDIRKRKGLKESMTPLSDFEDKL

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
454		16		83	0.994512
619		88		11	0.923564
848		10		90	0.90298
860			90	10	0.90298
871			10	90	0.90298
873			10	90	0.90298
874	10			90	0.90298
876	10	90			0.90298
878	90		10		0.90298
880		10	90		0.90298
919		62		37	1.0
938		12	87		0.992554
1085	80			20	0.995493
1087	80	20			0.995493
1089	80	20			0.995493
1092	80		20		0.995493
1096		80	20		0.995493
1099			20	80	0.995493
1100	75		25		0.996473
1101	75	25			0.996473
1439		66	33		0.997452
1500		40		60	1.0
1502	60			40	1.0
1503		40	60		1.0
1506			40	60	1.0
1508		40		60	1.0
1515	60			40	1.0
1520	40			60	1.0
1521	60	40			1.0
1576			83	16	0.994512
1577		83		16	0.994512
1578	83		16		0.994512
1579	83		16		0.994512
1580	83		16		0.994512
1805	14	85			0.993533
1809			14	85	0.993533
1824	14		85		0.993533
1902			14	85	0.993533
1903			14	85	0.993533
1951		80		20	0.995493
1991	20		80		0.995493
2012		10		90	0.90298
2673	10		90		0.90298
2679	90		10		0.90298
2681	90		10		0.90298
2718		11		88	0.923564
2782		90	10		0.90298
2786	90		10		0.90298
2788			10	90	0.90298
2789	10			90	0.90298
2791			10	90	0.90298
2794	90	10			0.90298
2835	11	88			0.923564
2838	88		11		0.923564
2839			11	88	0.923564
2862	10	90			0.90298
2864			10	90	0.90298
2865	90		10		0.90298
2874	90		10		0.90298
2999	86	8	4		0.999539
3058		91		8	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain