SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2817

Length: 1932 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2817

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MAD domain containing protein	-	-	2.0e-05	18%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	45%
Blast2go	protein	-	-	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	0.0	66%
Blast2go	S-ribonuclease binding protein, SBP1, pollen	IPR017066	-	0.0	66%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9NH30

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MAVQAQYSSNMRNRHLFAGENKVSIPIAFFGPGNYMDQIQQQQQQQIQSQSQNQSPPVNGLPNQPPYINQYTTCNRGQQATGAGLHGSENDLAWNLLAPRKRTREHELLENSQISSIDFLQSQRTAQIALPQSNGAVSTGLRLSLDDEKLNSSSNMSLSTSKVSLMSEELSGVLQQQNAEIDQFLRVQEEQFRQALDEKTRRFQMNILASLEEAALRKLRDKDLEVENMNKKNLELEEKMKQLSMEAHAWQYRAKCSETMINALKFNLQQAYAQNRESKEGCGDSEVDDAASCFNADVGDFQALIYKENRDLKDQRTCKVCRSNDVCILLLPCRHLCLCKDCESRLDVCPLCRSFKSASMQIYMS*

Protein Length: 367

Fln nts: ACGTCGTGACCTTGGCTGGCTGCTCAGATAAATCAACTCGGCTGCAATTTCTAGACCCATTGACTCACTATGGATTCATTCATACCATTTCGTATATAATACAATCATCCCACTTTCATCCGTTCATGTAATACGAAGAACATCAAGGATCTCTGTAATCGGAGCTATCGGGATTGTCTCAGGTTCAAATCTGTGCGGCTTTCGATAACCCTTCTCCCCGTTTGTTTGAAGGCTCGAC_-_ATGGCGGTTCAGGCACAATACTCGTCCAACATGCGCAACAGGCACTTGTTTGCAGGTGAGAACAAAGTTTCCATTCCAATTGCTTTCTTTGGGCCCGGAAATTACATGGATCAGATTCAGCAGCAGCAACAGCAGCAGATTCAGTCCCAATCCCAAAACCAATCCCCACCTGTTAACGGGTTGCCCAATCAGCCCCCATACATCAACCAGTATACTACTTGTAACCGTGGACAACAGGCCACAGGCGCAGGCTTACATGGGTCTGAGAATGATCTGGCTTGGAATTTACTGGCACCGAGGAAGAGGACCAGAGAGCACGAGCTTCTGGAAAATTCTCAAATTTCATCTATTGATTTTCTGCAGAGCCAGCGCACTGCTCAGATTGCCCTCCCTCAGTCCAATGGTGCCGTTTCGACTGGGTTGCGCTTATCGTTGGATGATGAAAAGCTGAATTCCTCCAGCAACATGTCGTTGAGTACTTCAAAGGTTTCCCTTATGAGCGAAGAACTGAGTGGAGTTTTACAGCAGCAGAATGCTGAGATCGATCAATTTTTAAGAGTTCAGGAGGAGCAATTTAGGCAAGCTCTGGATGAAAAAACACGGAGGTTTCAGATGAATATCTTGGCATCTCTTGAGGAAGCTGCACTAAGGAAGCTCAGGGATAAGGATTTGGAGGTGGAAAACATGAATAAAAAAAATCTGGAACTAGAAGAGAAGATGAAGCAATTGAGCATGGAAGCACATGCATGGCAATATCGGGCAAAATGTAGTGAAACTATGATTAATGCACTTAAATTCAATCTGCAGCAGGCTTATGCCCAAAACAGGGAGAGTAAAGAAGGATGTGGAGACAGTGAAGTAGATGATGCAGCTTCTTGTTTTAATGCTGATGTGGGTGATTTCCAGGCTCTCATCTACAAGGAGAATAGGGACTTAAAAGATCAGAGGACTTGCAAGGTATGCAGAAGCAATGATGTATGCATTCTTTTGCTGCCTTGCAGGCATCTTTGCCTTTGCAAAGACTGTGAGAGTAGGCTTGATGTTTGCCCCTTGTGCCGGTCATTTAAGAGTGCTAGCATGCAGATCTATATGTCATGAATTACCACTATGAATAAATGCAGCCTATGATTGTCTATGTTCCTTAGTGACCAATTTTATCTTTGGTCACCACATTGATGTCATTTGGGTATGCATTGCATCTCCCTTGTGCTTTCATAGCTAGATCTACATATGGACAGGGGATTTTTGAAAGAGGCAACTTGGATTCTGGTCATTGGCTGCTCTGGATCTTGAGCTTCTTAACCATATAAGGAATGCCATGTTGTAGGGTCCAACATTTTGTTCCGTGTTCATATTGACCTCTAAAATTAGTTTGGTGTTCATATTGACCTCTCCATTTAGTTTGATGTTCATATTAACCTCTAAATTACCATATTCATGGTAAAATGGAATTTTTTTAGGAGAGACGCCTAAATGGGCATTTGTAATGCTGATCTTGAAATATATTATTTTGGGCACCTCCTTCATAAAGCTAAACTATTTGAAGTCACCATTACATTGCAGTGGATTCTAGAGTGTGTATATTTACGAATTAATACCACTCATAGGAATTTGATGGTGTCAGGTTTCATGCCCTTGTAGATATCTGACTGTAAGCAGTGTTATCACAATTAAAATTCTAGTTCATTTAAAGC

Fln Alignment:

sp_v1.1_unigene2817___QAQYSSNMRNRHLFAGENKVSIPIAFFGPGNYMDXXXXXXXXXXXXXXXXXXPPVNGLPNQPPYINQYTTCNRGQQATGAGLHGSEN--DLAWN--LLAPRKRTREHELLEN-SQISSIDFLQSQRTAQIALPQSNGAVSTGLRLSLDDEXXXXXXXXXXXXXXXXXMSEELSGVLQQQNAEIDQFLRVQEEQFRQALDEKTRRFQMNILASLEEAALRKLRDKDLEVXXXXXXXXXXXXXXXQLSMEAHAWQYRAKCSETMINALKFNLQQAYAQNRESKEGCGDSEVDDAASCFNADVGDFQALIYKENRDLKDQRTCKVCRSNDVCILLLPCRHLCLCKDCESRLDVCPLCRSFKSASMQIYM
B9NH30______________QQQQPKNLRN--LYAIDSQISPAVAYFNPSNLQDQS-----------------------QHPPYVPPFHVVGF---APGPGNDGSDGGLELQWNYGLEPKRKRLKEQDFLENNSQISSVDFLQAR------------SVSTGLGLSLDNTRVSSSGDSALLSL----IGDDIDSELQRQDVEVDKFLKIQGDRLRQTILEKVQADQLQTISLVEEKVLQKLRQKEAEVESINKKNLELEEKMEQLSMEAGAWQERARYNENMINAIKFNIQQVYAQSRDSKEGCGDSEVDDTASCCNGRAIDFH-LLSNDNNDMKELMTCKACRVNEVCMLLLPCKHLCLCKDCESKLSFCPLCHSSKFIGMEVYM

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
883		83		16	0.994512
891	40	60			1.0
969	87		12		0.992554
1750	37			62	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain