SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2811

Length: 1145 nt

Origin of reads: Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2811 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	tir nbs lrr disease resistance protein	-	-	62%

Source	InterPros	Term	Type	Identity
Blast2go	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	62%
Blast2go	Disease resistance protein	IPR000767	-	62%
Blast2go	NB-ARC	IPR002182	-	62%
Blast2go	AAA+ ATPase domain	IPR003593	-	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRB4

Fln msg: Distance to subject end: 180 aas, your sequence is shorter than subject: 381 - 579

Fln protein: MASTSYGSSSGNNCVFAVFINHRGPDCKKTLAKHLYDRLNKHGLRVFLDEDELQEGEYITPQIQSAIRTASVHIAIFSPRYAESNWCLDELLLMFESRATIIPVFYGGVKPSDLRWGTQGEKGVYGRALQTLEKKTTLDSKPRYDPNTIQKWRKALTDAAEIKGFDMETYNGDEQQLLQQIVEGALEKVKRALHVSRYPTALDEKVEEFERAMLLDQQSIGTKVIGIVGLGGVGKTTLAKEIFNRWRSNYKQTYFQFDVREIAARKSLKSLQKMILKGLAQVHVGIDSTDDGIEKLQRYLQSSHAFLILDDVDHLQQVEALLLPVRDVVRQGSLILVTSRNKDILQSSGIAESSIFKLTGFRRPQSRELFCCHAFDQRYPP

Protein Length: 382

Fln nts: CCATGGCATCCACCTCATATGGATCTTCCAGCGGCAACAACTGTGTCTTTGCTGTCTTTATCAACCACAGGGGTCCGGACTGCAAGAAAACCCTCGCCAAACATCTTTATGACCGCCTTAACAAACACGGACTGCGAGTATTTCTCGACGAAGATGAATTGCAAGAAGGAGAGTATATAACTCCTCAAATCCAGAGTGCCATTCGAACAGCTTCTGTACATATCGCTATTTTCTCTCCGCGATATGCAGAGTCAAATTGGTGCCTTGATGAGCTTTTGCTCATGTTCGAGTCGAGGGCAACGATTATTCCAGTCTTCTATGGTGGTGTCAAACCTTCAGATCTTAGATGGGGAACGCAGGGCGAAAAAGGAGTATATGGTCGAGCACTGCAAACGCTCGAGAAGAAGACAACGTTGGATTCTAAACCACGATACGACCCCAACACCATCCAGAAATGGAGGAAGGCTCTCACTGATGCTGCAGAAATAAAAGGTTTCGATATGGAGACGTATAATGGCGATGAGCAACAGCTCCTTCAACAGATTGTGGAAGGAGCGTTGGAAAAAGTTAAAAGAGCACTACATGTGTCTAGATATCCAACAGCGTTGGATGAAAAGGTTGAAGAATTCGAAAGGGCAATGTTACTCGATCAGCAAAGCATAGGGACTAAAGTTATAGGAATTGTCGGGCTTGGCGGTGTTGGCAAAACCACCCTAGCAAAAGAGATCTTTAACCGTTGGAGATCAAATTACAAGCAAACTTACTTTCAATTCGATGTCAGAGAAATCGCAGCGAGAAAATCTTTAAAATCTTTGCAGAAAATGATTCTTAAGGGCTTGGCTCAAGTGCATGTCGGAATAGACAGCACTGATGATGGTATAGAGAAACTCCAAAGATATCTTCAGTCTTCTCATGCTTTCTTAATTTTAGATGATGTGGACCATCTTCAGCAGGTGGAAGCATTACTTTTACCCGTGAGAGATGTGGTTAGGCAAGGTAGCTTAATTCTGGTCACATCTCGAAACAAGGATATACTTCAAAGCTCAGGGATTGCGGAGTCTTCCATTTTCAAGCTAACAGGATTCAGACGACCACAATCGCGAGAGCTATTCTGCTGCCATGCGTTCGACCAGCGATATCCTCCT

Fln Alignment:

sp_v1.1_unigene2811___ASTSYGSSSGNNCVFAVFINHRGPDCKKTLAKHLYDRLNKHGLRVFLDEDELQEGEYITPQIQSAIRTASVHIAIFSPRYAESNWCLDELLLMFESRATIIPVFYGGVKPSDLRW---GTQGEKGVYGRALQTLEKKTTLD-SKPRYDPNTIQKWRKALTDAAEIKGFDMETYNGDEQQLLQQIVEGALEKVKR-ALHVSRYPTALDEKVEEFERAMLLDQQSXXXXXXXXXXXXXXXXXXLAKEIFNRWRSNYKQTYFQFDVREIAARKSLKSLQKMILKGLAQVHVGIDSTDDGIEKLQRYLQSSH-AFLILDDVDHLQQVEALLLPVRDVVRQGSLILVTSRNKDIL-QSSGIAESSIFKLTGFRRPQSRELFCCHAFDQRYP
B8LRB4______________SSTSPSHANTNSYVYDVFINHRGPDVKKGLASHLYHRLKAYGLGVFLDQQELERGENMTPQIEGAIRTASIHIAIFSPTYAESSWCLKELVMMLESGSTIIPVFY-HVRPCELRWTRGGNGDGDGVYARALCTLEKKRTFDQEKPRHDSNTIEKWRNALSNVAERSGFELTAYNGDEGQLVDDVVQQVLKKVRKPPLDVAKFPTGLVEKSKDLKMTVSLQRKSGKPTIVAIVGLGGIGKTTLAKEFFNSERSNYTRFCFLFDVRS----KSLHSLQSSILHDLIQNNVQINGVDEGKEKLKMHLSSSHKALIVLDDVDQSDQLDALLFPIKDVIHPDSLILITSRNKDVLTTNSEIVESSIYTLKGLNQEQSRELFCRYAFGQPLP

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
416	80		20		0.995493
436	20		80		0.995493
526		33		66	1.0
989	16	83			0.994512
1050	40		60		1.0
1095			60	40	1.0
1096	60		40		1.0
1099	60		40		1.0
1100	60			40	1.0
1103		40		60	1.0
1105			40	60	1.0
1107	60	40			1.0
1111	60		40		1.0
1115		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain