SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2802

Length: 2472 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2802
CCAATACGAATTTCTACCCTGCCATGACTGATCCCGGTCCGTGGGCATTCCGTGTGAACGAACATAGGGACATGCATAGCAGACAAAAGAAAAGTCACTATTTTATGCCATGTGACCAGAGGCAAATCAACACCTTTTCGAAGTCAAAGTCTGACAGAGGCCACAGTCTTATCCCTCCTTCCTCCATGTACTTGNGCCTNNCNNNTGCCNTGNCANNTGCCCTCTTTTTGGCCCAACTACCATTTTCACTGCAATGCAATAAATCTGCTTCGTCGTCGCCCTTATTCGCCAGGGCTCCTGAACGGATGCATTTGGTATCATTCTCGGGGAAGCTGTGCAGATCCAGTCTTGACCCATTGAACTGCAGCCTCGCACTCTACAGTCAATCCCATCGTATCCTGCAAAATTTTCTGTTTTTCCTTTGTTTTGACCGATTTATTTGGTGCTCATCTGCCCAAGCTTGCCTTTTTACGGAAGATGTGATCTGGGAAGCCGTCTGAATAAGAAAACTAAACATGGGGAATTGTTGGGGCACGTCTCTGATATCTGACAATCATGACCACACTGCTACATCCGGGTCTGGGGAATCGAAACCCAGTAGCAGAGATACCATATTCTCCTCGCCTTCCACACAGACCATTTCATCTCTCAGCGGTACGACGCTTAGCGAAAGCTTCCCATCGACTCCAAGGCCCGAAGGGCGAATCCTGCCATCGGCGAATTTGAAGGCTTTCAGCTTCAATGACCTCAAGAATGCAACCAGGAACTTTCGCCCGGATAGCGTACTCGGCCAAGGGGGATTTGGGTCTGTTTTTAAAGGATGGATTGATGAGCATGGATTCATGGCGGCAAAGCCAGGCACTGGTATGGTTATTGCTGTGAAGAAACTGAACCAGGAGAGCTTGCAGGGCCGTGATGAATGGCTGGCTGAAGTGAACTATTTGGGGCAACTCTCCCACCCCAATCTCGTGAAGCTCGTAGGATACTGCACCGAGGATGATCATCTTCTCTTGGTCTATGAGTTTATGCCAAAGGGGAGTTTGGAAAACCACCTCTTTAGAAAAGGTTCATATTATCAACCTCTTTCCTGGGCTCTTCGGATCAAGATAGCCCTTGGCGCTGCAAGGGGACTTGCATTTCTGCATGATGCAAAACCACAAGTTATATATCGTGATTTCAAGACCTCAAACATACTACTTGATTCGAATTATAGCGCGAAGCTTTCTGACTTTGGACTAGCCAAGGATGGTCCACAAGGAAGTAACACACATGTCTCTACAAGGATCATGGGGACTTATGGTTATGCTGCTCCTGAATATATGGCAACAGGTCATCTGACAGCCAAGAGTGATGTGTATGGTTTTGGAGTCGTCTTACTGGAAATGTTATCAGGCGAACGTGCTATAGATATAAACCGGCCTGCTGGACAACATAAACTAGTGGAGTGGCTCAAACCCTTTTTGAATGATAAACGGAAATTGTTTCGTGTTATGGACTCCCGATTGGATGGACACTATCCATCAAAGGGGGCTTACAAGGCAGCCATTCTTGCTCTACACTGTCTCACTCCAGAAGCAAAACAAAGGCCTCGCATGAGTGAAGTTGTTGAAAAATTGGAAGTGATACAATCTATTAAAGACACATCAAAGTATTCTCAACGTGATGGACCTGGAAATGGAAATGGAAACAGAAATTTGAACCACAGCCCTCAAAACATGCCCTATCGCTCTCCAGGCCATCCTAGACAGAATGGTTCTCCTCTTCATTCGCATGCACGGTCTCCAAGACAACGATGATGTAAGCAATAAGGACAGCAACACAACTGATAAATTGTGAGCTGTTACATGTTTGTAATTGTAATCCATGCCAGGTTGCTTTGAAGGGACTCGATGTATTAATTACAAGGATGTCAACAGTGGGGTTCTTTGGCCCTGAGCTTGTAGTTTCTGAACATCCAAATAGTTCTCGTAACCTTGGTTTTGCATCAAATTATATGTATTGGATAAGCCATGTTTCTGTTTTGTAAGAATTTTTTCAGAGCAGTTGGAAAAATGTCGACTTCTTAGCGGACATGATTTTACTGTGCTGTGCACATTCTGCATTGTAATACATTAAATTATTATATTAACAGCTATTGAGTTCAGAAAAGGACCCACGAAAAAACGGACTGAAAAGATCAGGACCAGGGGTCTATGCCATTTCACATGGACGTTAAAATTAAATATGATCAATCAGCAAGGATTGCCTTACAGAGGTCATGGCATCAGCAGGGAACTTTGGCCGAGGGCATCCTTGCTATCTGGTCCAAGTCCACAAGTTTTACTTATTTATATCTCTCTGTTCTTTCGGACTGGCCTGAGGACCGAGATTTCCTTTTTACAAAAGGGTAAATTTAGGCATCTCGTGCCATGACTTAATTTTATCAAAGAATTCAATGCAATTACAAATTTGTTTTTGAAGTTTAGATTGAGC

Ace file of the UniGene sp_v1.1_unigene2802

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	7.0e-21	33%
FL-Next	sp=Protein kinase APK1B, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	72%
Blast2go	protein	-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	defense response to insect	GO:0002213	Biological Process	79%
Blast2go	defense response to fungus	GO:0050832	Biological Process	79%
Blast2go	transferase activity	GO:0016740	Molecular Function	79%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	79%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	79%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	79%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	79%
Blast2go	Protein kinase-like domain	IPR011009	-	79%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	79%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P46573

Fln msg:

Fln protein: MGNCWGTSLISDNHDHTATSGSGESKPSSRDTIFSSPSTQTISSLSGTTLSESFPSTPRPEGRILPSANLKAFSFNDLKNATRNFRPDSVLGQGGFGSVFKGWIDEHGFMAAKPGTGMVIAVKKLNQESLQGRDEWLAEVNYLGQLSHPNLVKLVGYCTEDDHLLLVYEFMPKGSLENHLFRKGSYYQPLSWALRIKIALGAARGLAFLHDAKPQVIYRDFKTSNILLDSNYSAKLSDFGLAKDGPQGSNTHVSTRIMGTYGYAAPEYMATGHLTAKSDVYGFGVVLLEMLSGERAIDINRPAGQHKLVEWLKPFLNDKRKLFRVMDSRLDGHYPSKGAYKAAILALHCLTPEAKQRPRMSEVVEKLEVIQSIKDTSKYSQRDGPGNGNGNRNLNHSPQNMPYRSPGHPRQNGSPLHSHARSPRQR*

Protein Length: 428

Fln nts: CCAATACGAATTTCTACCCTGCCATGACTGATCCCGGTCCGTGGGCATTCCGTGTGAACGAACATAGGGACATGCATAGCAGACAAAAGAAAAGTCACTATTTTATGCCATGTGACCAGAGGCAAATCAACACCTTTTCGAAGTCAAAGTCTGACAGAGGCCACAGTCTTATCCCTCCTTCCTCCATGTACTTGaGCCTctCgacTGCCtTGgCAacTGCCCTCTTTTTGGCCCAACTACCATTTTCACTGCAATGCAATAAATCTGCTTCGTCGTCGCCCTTATTCGCCAGGGCTCCTGAACGGATGCATTTGGTATCATTCTCGGGGAAGCTGTGCAGATCCAGTCTTGACCCATTGAACTGCAGCCTCGCACTCTACAGTCAATCCCATCGTATCCTGCAAAATTTTCTGTTTTTCCTTTGTTTTGACCGATTTATTTGGTGCTCATCTGCCCAAGCTTGCCTTTTTACGGAAGATGTGATCTGGGAAGCCGTCTGAATAAGAAAACTAAAC_-_ATGGGGAATTGTTGGGGCACGTCTCTGATATCTGACAATCATGACCACACTGCTACATCCGGGTCTGGGGAATCGAAACCCAGTAGCAGAGATACCATATTCTCCTCGCCTTCCACACAGACCATTTCATCTCTCAGCGGTACGACGCTTAGCGAAAGCTTCCCATCGACTCCAAGGCCCGAAGGGCGAATCCTGCCATCGGCGAATTTGAAGGCTTTCAGCTTCAATGACCTCAAGAATGCAACCAGGAACTTTCGCCCGGATAGCGTACTCGGCCAAGGGGGATTTGGGTCTGTTTTTAAAGGATGGATTGATGAGCATGGATTCATGGCGGCAAAGCCAGGCACTGGTATGGTTATTGCTGTGAAGAAACTGAACCAGGAGAGCTTGCAGGGCCGTGATGAATGGCTGGCTGAAGTGAACTATTTGGGGCAACTCTCCCACCCCAATCTCGTGAAGCTCGTAGGATACTGCACCGAGGATGATCATCTTCTCTTGGTCTATGAGTTTATGCCAAAGGGGAGTTTGGAAAACCACCTCTTTAGAAAAGGTTCATATTATCAACCTCTTTCCTGGGCTCTTCGGATCAAGATAGCCCTTGGCGCTGCAAGGGGACTTGCATTTCTGCATGATGCAAAACCACAAGTTATATATCGTGATTTCAAGACCTCAAACATACTACTTGATTCGAATTATAGCGCGAAGCTTTCTGACTTTGGACTAGCCAAGGATGGTCCACAAGGAAGTAACACACATGTCTCTACAAGGATCATGGGGACTTATGGTTATGCTGCTCCTGAATATATGGCAACAGGTCATCTGACAGCCAAGAGTGATGTGTATGGTTTTGGAGTCGTCTTACTGGAAATGTTATCAGGCGAACGTGCTATAGATATAAACCGGCCTGCTGGACAACATAAACTAGTGGAGTGGCTCAAACCCTTTTTGAATGATAAACGGAAATTGTTTCGTGTTATGGACTCCCGATTGGATGGACACTATCCATCAAAGGGGGCTTACAAGGCAGCCATTCTTGCTCTACACTGTCTCACTCCAGAAGCAAAACAAAGGCCTCGCATGAGTGAAGTTGTTGAAAAATTGGAAGTGATACAATCTATTAAAGACACATCAAAGTATTCTCAACGTGATGGACCTGGAAATGGAAATGGAAACAGAAATTTGAACCACAGCCCTCAAAACATGCCCTATCGCTCTCCAGGCCATCCTAGACAGAATGGTTCTCCTCTTCATTCGCATGCACGGTCTCCAAGACAACGATGA___TGTAAGCAATAAGGACAGCAACACAACTGATAAATTGTGAGCTGTTACATGTTTGTAATTGTAATCCATGCCAGGTTGCTTTGAAGGGACTCGATGTATTAATTACAAGGATGTCAACAGTGGGGTTCTTTGGCCCTGAGCTTGTAGTTTCTGAACATCCAAATAGTTCTCGTAACCTTGGTTTTGCATCAAATTATATGTATTGGATAAGCCATGTTTCTGTTTTGTAAGAATTTTTTCAGAGCAGTTGGAAAAATGTCGACTTCTTAGCGGACATGATTTTACTGTGCTGTGCACATTCTGCATTGTAATACATTAAATTATTATATTAACAGCTATTGAGTTCAGAAAAGGACCCACGAAAAAACGGACTGAAAAGATCAGGACCAGGGGTCTATGCCATTTCACATGGACGTTAAAATTAAATATGATCAATCAGCAAGGATTGCCTTACAGAGGTCATGGCATCAGCAGGGAACTTTGGCCGAGGGCATCCTTGCTATCTGGTCCAAGTCCACAAGTTTTACTTATTTATATCTCTCTGTTCTTTCGGACTGGCCTGAGGACCGAGATTTCCTTTTTACAAAAGGGTAAATTTAGGCATCTCGTGCCATGACTTAATTTTATCAAAGAATTCAATGCAATTACAAATTTGTTTTTGAAGTTTAGATTGAGC

Fln Alignment:

sp_v1.1_unigene2802___SESFPSTPRPEGRILPSANLKAFSFNDLKNATRNFRPDSVLGQGGFGSVFKGWIDEHGFMAAKPGTGMVIAVKKLNQESLQGRDEWLAEVNYLGQLSHPNLVKLVGYCTEDDHLLLVYEFMPKGSLENHLFRKGSYYQPLSWALRIKIALGAARGLAFLHDAKPQVIYRDFKTSNILLDSNYSAKLSDFGLAKDGPQGSNTHVSTRIMGTYGYAAPEYMATGHLTAKSDVYGFGVVLLEMLSGERAIDINRPAGQHKLVEWLKPFLNDKRKLFRVMDSRLDGHYPSKGAYKAAILALHCLTPEAKQRPRMSEVVEKLEVIQSIKD
P46573______________SVSIRTNPRTEGEILQSPNLKSFTFAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWTLRLKVALGAAKGLAFLHNAETSVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPTGDKSHVSTRIMGTYGYAAPEYLATGHLTTKSDVYSYGVVLLEVLSGRRAVDKNRPPGEQKLVEWARPLLANKRKLFRVIDNRLQDQYSMEEACKVATLALRCLTFEIKLRPNMNEVVSHLEHIQTLNE

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
593			75	25	0.996473
1136		25		75	0.996473
1276		10		90	0.90298
1356	10		90		0.90298
1661	82			17	1.0
1867	14	85			0.993533
2076	75		25		1.0
2081		25		75	1.0
2084			25	75	1.0
2085	75		25		1.0
2092	22			77	0.999999
2093		22	77		0.999999
2095		22	77		0.999999
2096	22	77			0.999999
2162	14		85		0.993533
2365	22		77		0.999999
2379	16			83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1670	1687	TGGAAA TGGAAA TGGAAA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain