SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2793

Length: 2019 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2793
ATGAATACAGAGTAGCGTAGTACTTTTGATCACCCTTAAATTATTAATAAAAGGACGAAGACAATCGACTGAACGCTTGTGTCCGGAACTGTCCGGAACTCAACAGTTAGCAGGGTCCCTAGACAGTGTGAAGGGAGGACCGTGGGAGAAACGTAAGTCGAACGCCGTGGTTCACAACTTTGCCAGCCCCTTTGGTTCACAACTTTGCATGGTTATCGCTGCAAAACCGCCCCTCCAAAACCAGACTGGTTTTGAATTTCCATCCATATAGGTAGATCTGCAAACAAAATTCGAAGATGACAACTCAAAAAAGCTAACCTCGCCATTACTTCTCCTATTATTACGGTGTCGGTGACCCCTTTGAGGTGAAATCTAGTGATTTCGGCACTGTTACTTAAATTCAGCTTAATTCAAGTAGCTGACGGACTGTGGAGGAGATCCTTCGTTGAAAGAGTTAAGTCAATTTTGTATAAGAGATGTCGATTGGTGATAGAAAGTCCGTTGCTGTCATCATGGTTGGAGGTCCAACTAAAGGCACTCGCTTTCGGCCTTTGTCATTGAATCTGGCTAAACCTCTCTTTCCGTTAGCTGGACAGCCTATGGTGCATCATCCAATTCTGGCCTGCAAAAAGATACCAAATTTGGCTCACATTTATCTTATAGGCTTTTACGAGGAGCGGGAGTTTGCTCTCTATGTTTCATCGATTTCAAATGAACTCAAGATTCCTGTCAGGTACCTGAGAGAAGATAAGCCACATGGTTCTGCAGGTGGACTTTACCATTTCAAAGACTTGATTATGGAGGAAGATCCAGCAAATATATTTTTGCTGAATTGTGATGTTTGCTGCAGCTTTCCTCTTGCAGATATGCTTGAGGCCCATTGCAGATATGGTGGAATGGGAACAATCTTGGTGATTAAGGTGTCTGCTGAATCGGCCAACCAGTTTGGTGAATTGGTTGCAGATTCTGTCACTGGTGAACTACTGCACTATGCAGAGAAGCCAGAGACTTTTGTAAGTGACCGAATCAACTGTGGTGTCTATGTTTTCACCCCGGATATATTTTTGGGAATACAGGATGTTTCAACCCAGCGAAAGGATAGAGCAACCATGCGGCGTGTATCTAGTTTTGAGGCTCTTCAGTCTGCAACAAAGGCCCTGCCAACAGACTTTGTCAGGTTAGACCAAGACATATTGACCCCTCTTGCTGGGAAGAAGAAATTGTACACATATGAGACATCGGATTTCTGGGAGCAGATCAAGACTCCAGGAATGTCTTTGAGATGCTCTTCACTATACCTTTCACAATATCGACTTACTAGTCCTGAACTCTTAGCAAAAAGCGATGGTGGTAGGACTGCTACTATTGTTGGTGATGTTTATATTCATCCTTCAGCAAAAGTGCATCCAACAGCAAAGATTGGGCCAAATGTCTCTATTTCGGCAAATGCTCGTATTGGGGCAGGGGTTAGATTGATTGGTTGCATAATTCTTGATGATGTAGAACTGAAGGAGAATTCAATTGTGATGCACTCCATTGTTGGCTGGAAGTCATCAATAGGAAGATGGTCGAGAGTTCAGGGTGAGGCAAATTATACGTCAAAACTTGGAATTACAATTCTTGGTGAGGACGTGACTGTTGAAGATGAAGTAGTTGTGGCTAACTGTATTGTACTTCCCCATAAGATGCTCAATATGAGTGTACAAGAGGAAATAATTTTGTAACTTGTGCTCATTTTTATCTTTCTTTCTTAACACATTTGAGAACATGGCTAGCCATTTTAGGCTGGATACTGTATCAATTTCAGAGCATATTCAGAAGTGTTTTATGGATTCAACCCATAGCGAGAATTAAAAATTAATTGTAAGAGAAACTCCATAGCAAGATTAAATTATTTGTACTAGAATTTCGTGAGTGTAATATAATATTTGATGAGATTGTGTCTGAACATTATATTAACAGTTGGTTTTGGACATAATTGAAAACTTCGATTTCATGGCTTCCAGCAATTGATAAAAC

Ace file of the UniGene sp_v1.1_unigene2793

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mannose-1-phosphate guanyltransferase, putative n=2 Tax=Malpighiales RepID=B9R8Y9_RICCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	88%
Blast2go	transferase activity	GO:0016740	Molecular Function	88%
Blast2go	peroxisome	GO:0005777	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nucleotidyl transferase	IPR005835	-	0.0	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8N1

Fln msg: your sequence is longer than subject: 416 - 308

Fln protein: MSIGDRKSVAVIMVGGPTKGTRFRPLSLNLAKPLFPLAGQPMVHHPILACKKIPNLAHIYLIGFYEEREFALYVSSISNELKIPVRYLREDKPHGSAGGLYHFKDLIMEEDPANIFLLNCDVCCSFPLADMLEAHCRYGGMGTILVIKVSAESANQFGELVADSVTGELLHYAEKPETFVSDRINCGVYVFTPDIFLGIQDVSTQRKDRATMRRVSSFEALQSATKALPTDFVRLDQDILTPLAGKKKLYTYETSDFWEQIKTPGMSLRCSSLYLSQYRLTSPELLAKSDGGRTATIVGDVYIHPSAKVHPTAKIGPNVSISANARIGAGVRLIGCIILDDVELKENSIVMHSIVGWKSSIGRWSRVQGEANYTSKLGITILGEDVTVEDEVVVANCIVLPHKMLNMSVQEEIIL*

Protein Length: 417

Fln nts: ATGAATACAGAGTAGCGTAGTACTTTTGATCACCCTTAAATTATTAATAAAAGGACGAAGACAATCGACTGAACGCTTGTGTCCGGAACTGTCCGGAACTCAACAGTTAGCAGGGTCCCTAGACAGTGTGAAGGGAGGACCGTGGGAGAAACGTAAGTCGAACGCCGTGGTTCACAACTTTGCCAGCCCCTTTGGTTCACAACTTTGCATGGTTATCGCTGCAAAACCGCCCCTCCAAAACCAGACTGGTTTTGAATTTCCATCCATATAGGTAGATCTGCAAACAAAATTCGAAGATGACAACTCAAAAAAGCTAACCTCGCCATTACTTCTCCTATTATTACGGTGTCGGTGACCCCTTTGAGGTGAAATCTAGTGATTTCGGCACTGTTACTTAAATTCAGCTTAATTCAAGTAGCTGACGGACTGTGGAGGAGATCCTTCGTTGAAAGAGTTAAGTCAATTTTGTATAAGAG_-_ATGTCGATTGGTGATAGAAAGTCCGTTGCTGTCATCATGGTTGGAGGTCCAACTAAAGGCACTCGCTTTCGGCCTTTGTCATTGAATCTGGCTAAACCTCTCTTTCCGTTAGCTGGACAGCCTATGGTGCATCATCCAATTCTGGCCTGCAAAAAGATACCAAATTTGGCTCACATTTATCTTATAGGCTTTTACGAGGAGCGGGAGTTTGCTCTCTATGTTTCATCGATTTCAAATGAACTCAAGATTCCTGTCAGGTACCTGAGAGAAGATAAGCCACATGGTTCTGCAGGTGGACTTTACCATTTCAAAGACTTGATTATGGAGGAAGATCCAGCAAATATATTTTTGCTGAATTGTGATGTTTGCTGCAGCTTTCCTCTTGCAGATATGCTTGAGGCCCATTGCAGATATGGTGGAATGGGAACAATCTTGGTGATTAAGGTGTCTGCTGAATCGGCCAACCAGTTTGGTGAATTGGTTGCAGATTCTGTCACTGGTGAACTACTGCACTATGCAGAGAAGCCAGAGACTTTTGTAAGTGACCGAATCAACTGTGGTGTCTATGTTTTCACCCCGGATATATTTTTGGGAATACAGGATGTTTCAACCCAGCGAAAGGATAGAGCAACCATGCGGCGTGTATCTAGTTTTGAGGCTCTTCAGTCTGCAACAAAGGCCCTGCCAACAGACTTTGTCAGGTTAGACCAAGACATATTGACCCCTCTTGCTGGGAAGAAGAAATTGTACACATATGAGACATCGGATTTCTGGGAGCAGATCAAGACTCCAGGAATGTCTTTGAGATGCTCTTCACTATACCTTTCACAATATCGACTTACTAGTCCTGAACTCTTAGCAAAAAGCGATGGTGGTAGGACTGCTACTATTGTTGGTGATGTTTATATTCATCCTTCAGCAAAAGTGCATCCAACAGCAAAGATTGGGCCAAATGTCTCTATTTCGGCAAATGCTCGTATTGGGGCAGGGGTTAGATTGATTGGTTGCATAATTCTTGATGATGTAGAACTGAAGGAGAATTCAATTGTGATGCACTCCATTGTTGGCTGGAAGTCATCAATAGGAAGATGGTCGAGAGTTCAGGGTGAGGCAAATTATACGTCAAAACTTGGAATTACAATTCTTGGTGAGGACGTGACTGTTGAAGATGAAGTAGTTGTGGCTAACTGTATTGTACTTCCCCATAAGATGCTCAATATGAGTGTACAAGAGGAAATAATTTTGTAA___CTTGTGCTCATTTTTATCTTTCTTTCTTAACACATTTGAGAACATGGCTAGCCATTTTAGGCTGGATACTGTATCAATTTCAGAGCATATTCAGAAGTGTTTTATGGATTCAACCCATAGCGAGAATTAAAAATTAATTGTAAGAGAAACTCCATAGCAAGATTAAATTATTTGTACTAGAATTTCGTGAGTGTAATATAATATTTGATGAGATTGTGTCTGAACATTATATTAACAGTTGGTTTTGGACATAATTGAAAACTTCGATTTCATGGCTTCCAGCAATTGATAAAAC

Fln Alignment:

sp_v1.1_unigene2793___MEEDPANIFLLNCDVCCSFPLADMLEAHCRYGGMGTILVIKVSAESANQFGELVADSVTGELLHYAEKPETFVSDRINCGVYVFTPDIFLGIQDVSTQRKDRATMRRVSSFEALQSATKALPTDFVRLDQDILTPLAGKKKLYTYETSDFWEQIKTPGMSLRCSSLYLSQYRLTSPELLAKSDGGRTATIVGDVYIHPSAKVHPTAKIGPNVSISANARIGAGVRLIGCIILDDVELKENSIVMHSIVGWKSSIGRWSRVQGEANYTSKLGITILGXXXXXXXXXXXANCIVLPHKMLNMSVQEE
D5A8N1______________MEDDPANIFLLNCDVCCSFPLADMLEAHCGYGGMGTILVIKVSAESASQFGELVADPVTGELLHYAEKPETFVSDRINCGVYIFTPDIFLGIQDVSTQRKDRATMRRVSSFEALQSATKALPTDFVRLDQDILSPLAGKRKLYTYETSDFWEQIKTPGMSLRCSSLYLSQYRLTSPELLAKSDGGRTATIVGDVYIHPSAKVHPTAKIGPNVSISANARVGAGVRLIGCIILDDVELKENSIVMHSIVGWKSSIGRWSRVQGEANYTSKFGITILGEDVTVEDEVVVANCIVLPHKMLNMSVQEE

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
78			25	75	0.996473
156	75		25		0.996473
158			25	75	0.996473
159		75	25		0.996473
203	25	75			0.996473
205			25	75	0.996473
206			25	75	0.996473
208		75	25		0.996473
290	25			75	0.996473
292		75	25		0.996473
294	75		25		0.996473
295	75		25		0.996473
352		16	83		0.994512
353	16			83	0.994512
355	83		16		0.994512
356		66	16		0.988813
357		83		16	0.994512
358	16	83			0.994512
361	16			83	0.994512
364	83		16		0.994512
467	25			75	1.0
585		10		90	0.90298
626	10	90			0.90298
627	90	10			0.90298
1649	90	9			1.0
1650			90	9	1.0
1652	90			9	1.0
1653		10	90		1.0
1742		60		40	1.0
1755		87		12	0.992554
1850	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain