SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2790

Length: 2187 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene2790
GTTGGTGGGGCTTTGGGATGAAAAATTTNTAATCCTTTGATTGCTTGGTTGACCGCACCTGGGAAAGCTCTGCATCAATACAAAATGAGTAGCATGGATATAAACTATTCCAATATCAATGCTGGATCGGAGGAATCCAGCATGAGAGCTGCAAGGTGGAAATACCCTACGCGAATCCTTGCCATTGCCCTGGCATCCACATTGCTCATGGTTTCTGTTACTGCTTTATCAGAAGGGGTTTCCAATAGATTTAGTAAAGAGAGGAATGGTGGAGGTGCGCAAATAATGCACTGGAAATCGACATCCAATGCTGTCCACCGCGCCTGCAGCAGCACACTGTATCCGGAATTCTGTGTATCCAGCGTTTCGAGCTTTCCTGGATTATCTAGACGGCCAAACCCCATGGAGATTGTGAAGGCCGTCGTGCATCTGAGTATAAATGCGGTAAAGAAGGCAAATGCCAAAGCCCGCGGGCTATGTCGCCCCGGTCTCGACCAGAGACAACGCGGTGCCCTGAAAGATTGTTTCGAGTTATTCCACGACACGCTCCATGAATTGCACGGCACGCTCTCAGATTTGAAGAACGCGACTTTCATGTCAATTCCACAGCACGCCAATGACCTCGAGACATTGCTGAGCGCGGCCATCACGAATCAGTACACCTGCCTTGATAGTTTTTCTCACAGCAAGGGGAATCTCAAGCAACGTTTGCTGGGAGGGCTGCGCAATGTGTCTCATCTGGTCAGCAATTCGCTGGCTATGGTCAAGAATATTTCAGCCGAAGCTTCAAGCCTGGCCAATCAGCGGCGAACTTTTCCGACACAGAATCGCCGTCTGTTGTCGGATCAATCTGATCCCAATTTCATGCCCATGGATTCCGATGGTTTTCCGACCTGGATGTCAGCCGGAGATCGAAGGCTTCTGCAAACCTCTACGAGCACGGTGAAGCCGAACGCTGTGGTTGCGAAGGACGGCAGTGGAAATTACACGAACATTACAGAAGCAGTGGAGAAGGCTCCCGAGAAGAGCCAGACGAGATACGTAATTCATATAAAAGCAGGAGTTTATGCAGAGAATGTGGAGTTGCACAAGAAGAAAACTAATATCATGTTCATTGGAGATGGTATGGATGTCACAGTGGTGACCGGAAACCGAAATGTGAAGGACAATTTCACAACCTTTCGTTCTGCAACTGTTGCTGTGACTGGAAACGGATTCATCGCTCGCGACATGACCTTCGAGAACACGGCAGGACCCGCAAAACACCAGGCGGTGGCCCTGCGTGTGGGATCAGATCTCTCGGCTTTCTATCGATGCAGTTTCAAGGGTTACCAGGACACCCTATACGCCCATTCCCTTCGTCAGTTTTACAGAGAATGCAACATCTATGGCACCGTAGATTTCATCTTCGGCAACTCCGCCGTCGTTTTTCAGGATTGCAATTTGCTGGCGCGGAGACCCCTCGAGAATCAGAAGATTCTTTACACCGCTCAGGGCAGGCAGGACCCCAATGAGAACACTGGAATTTCCATTCAGAACTGTAATGTGACCGCAGCCCCAGACCTGGCTCCAGTGAAGAGCTCGTTCGAGGCATATCTTGGGAGGCCATGGAAAGAGTACTCTCGCACTGTCTTCATGCAGTCTTTTCTGGGCGACCTGATTCAACCTGCCGGTTGGCTCGAATGGAATGGATCCTTCGCCCTCAGCACCCTGTACTATGGGGAATATATGAACCGCGGCCCTGGTGCGGGCACTACAAATCGGGTCAAATGGGCGGGGTATCGAGTGATTAATAGCTCAAGCGAGGCAAGCCAATTTACAGTCTCAAAATTCATTGAAGGAGATTCATGGTTACCTTCCACCGGAGTTAAGTACGTCTCAGGTTTCACTAGCACCACCACTGGGACTTAGCGCGCAATGGAGTTTCTGGACTTTTTGTCACTAGTACGTATTCTCATAAAACGTAACCAGCTGCATGCATTTGACAATGGAGATCATGGTCTCGTTTTATGCTTTGGTTAAAATATGTCTCGCCAAATTAAGGTTGTGTAGTGGTTCGATCCTGGGCTTGTAACAGATAGAAACAATGATGTACCTCTTTGCAGTTTTGAAGGGTTAACAAATTTGATTCGATTAGTGAATAATATTAAGTATCTAGAAATTCAAATGGTATACTGACAGTTTAAC

Ace file of the UniGene sp_v1.1_unigene2790

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=1 Tax=Picea sitchensis RepID=C0PT44_PICSI	-	-	69%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	pectin methylesterase	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	70%

Source	InterPros	Term	Type	Identity
Blast2go	Pectinesterase, catalytic	IPR000070	-	70%
Blast2go	Pectinesterase inhibitor	IPR006501	-	70%
Blast2go	Pectin lyase fold/virulence factor	IPR011050	-	70%
Blast2go	Pectin lyase fold	IPR012334	-	70%
Blast2go	Pectinesterase, active site	IPR018040	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT44

Fln msg:

Fln protein: MSSMDINYSNINAGSEESSMRAARWKYPTRILAIALASTLLMVSVTALSEGVSNRFSKERNGGGAQIMHWKSTSNAVHRACSSTLYPEFCVSSVSSFPGLSRRPNPMEIVKAVVHLSINAVKKANAKARGLCRPGLDQRQRGALKDCFELFHDTLHELHGTLSDLKNATFMSIPQHANDLETLLSAAITNQYTCLDSFSHSKGNLKQRLLGGLRNVSHLVSNSLAMVKNISAEASSLANQRRTFPTQNRRLLSDQSDPNFMPMDSDGFPTWMSAGDRRLLQTSTSTVKPNAVVAKDGSGNYTNITEAVEKAPEKSQTRYVIHIKAGVYAENVELHKKKTNIMFIGDGMDVTVVTGNRNVKDNFTTFRSATVAVTGNGFIARDMTFENTAGPAKHQAVALRVGSDLSAFYRCSFKGYQDTLYAHSLRQFYRECNIYGTVDFIFGNSAVVFQDCNLLARRPLENQKILYTAQGRQDPNENTGISIQNCNVTAAPDLAPVKSSFEAYLGRPWKEYSRTVFMQSFLGDLIQPAGWLEWNGSFALSTLYYGEYMNRGPGAGTTNRVKWAGYRVINSSSEASQFTVSKFIEGDSWLPSTGVKYVSGFTSTTTGT*

Protein Length: 610

Fln nts: GTTGGTGGGGCTTTGGGATGAAAAATTTaTAATCCTTTGATTGCTTGGTTGACCGCACCTGGGAAAGCTCTGCATCAATACAAA_-_ATGAGTAGCATGGATATAAACTATTCCAATATCAATGCTGGATCGGAGGAATCCAGCATGAGAGCTGCAAGGTGGAAATACCCTACGCGAATCCTTGCCATTGCCCTGGCATCCACATTGCTCATGGTTTCTGTTACTGCTTTATCAGAAGGGGTTTCCAATAGATTTAGTAAAGAGAGGAATGGTGGAGGTGCGCAAATAATGCACTGGAAATCGACATCCAATGCTGTCCACCGCGCCTGCAGCAGCACACTGTATCCGGAATTCTGTGTATCCAGCGTTTCGAGCTTTCCTGGATTATCTAGACGGCCAAACCCCATGGAGATTGTGAAGGCCGTCGTGCATCTGAGTATAAATGCGGTAAAGAAGGCAAATGCCAAAGCCCGCGGGCTATGTCGCCCCGGTCTCGACCAGAGACAACGCGGTGCCCTGAAAGATTGTTTCGAGTTATTCCACGACACGCTCCATGAATTGCACGGCACGCTCTCAGATTTGAAGAACGCGACTTTCATGTCAATTCCACAGCACGCCAATGACCTCGAGACATTGCTGAGCGCGGCCATCACGAATCAGTACACCTGCCTTGATAGTTTTTCTCACAGCAAGGGGAATCTCAAGCAACGTTTGCTGGGAGGGCTGCGCAATGTGTCTCATCTGGTCAGCAATTCGCTGGCTATGGTCAAGAATATTTCAGCCGAAGCTTCAAGCCTGGCCAATCAGCGGCGAACTTTTCCGACACAGAATCGCCGTCTGTTGTCGGATCAATCTGATCCCAATTTCATGCCCATGGATTCCGATGGTTTTCCGACCTGGATGTCAGCCGGAGATCGAAGGCTTCTGCAAACCTCTACGAGCACGGTGAAGCCGAACGCTGTGGTTGCGAAGGACGGCAGTGGAAATTACACGAACATTACAGAAGCAGTGGAGAAGGCTCCCGAGAAGAGCCAGACGAGATACGTAATTCATATAAAAGCAGGAGTTTATGCAGAGAATGTGGAGTTGCACAAGAAGAAAACTAATATCATGTTCATTGGAGATGGTATGGATGTCACAGTGGTGACCGGAAACCGAAATGTGAAGGACAATTTCACAACCTTTCGTTCTGCAACTGTTGCTGTGACTGGAAACGGATTCATCGCTCGCGACATGACCTTCGAGAACACGGCAGGACCCGCAAAACACCAGGCGGTGGCCCTGCGTGTGGGATCAGATCTCTCGGCTTTCTATCGATGCAGTTTCAAGGGTTACCAGGACACCCTATACGCCCATTCCCTTCGTCAGTTTTACAGAGAATGCAACATCTATGGCACCGTAGATTTCATCTTCGGCAACTCCGCCGTCGTTTTTCAGGATTGCAATTTGCTGGCGCGGAGACCCCTCGAGAATCAGAAGATTCTTTACACCGCTCAGGGCAGGCAGGACCCCAATGAGAACACTGGAATTTCCATTCAGAACTGTAATGTGACCGCAGCCCCAGACCTGGCTCCAGTGAAGAGCTCGTTCGAGGCATATCTTGGGAGGCCATGGAAAGAGTACTCTCGCACTGTCTTCATGCAGTCTTTTCTGGGCGACCTGATTCAACCTGCCGGTTGGCTCGAATGGAATGGATCCTTCGCCCTCAGCACCCTGTACTATGGGGAATATATGAACCGCGGCCCTGGTGCGGGCACTACAAATCGGGTCAAATGGGCGGGGTATCGAGTGATTAATAGCTCAAGCGAGGCAAGCCAATTTACAGTCTCAAAATTCATTGAAGGAGATTCATGGTTACCTTCCACCGGAGTTAAGTACGTCTCAGGTTTCACTAGCACCACCACTGGGACTTAG___CGCGCAATGGAGTTTCTGGACTTTTTGTCACTAGTACGTATTCTCATAAAACGTAACCAGCTGCATGCATTTGACAATGGAGATCATGGTCTCGTTTTATGCTTTGGTTAAAATATGTCTCGCCAAATTAAGGTTGTGTAGTGGTTCGATCCTGGGCTTGTAACAGATAGAAACAATGATGTACCTCTTTGCAGTTTTGAAGGGTTAACAAATTTGATTCGATTAGTGAATAATATTAAGTATCTAGAAATTCAAATGGTATACTGACAGTTTAAC

Fln Alignment:

sp_v1.1_unigene2790___MSSMDINYSNINAGSEESSMRAARWKYPTRILAIALASTLLMVSVTALSEGVSNRFSKERNGGG----AQIMHWKSTSNAVHRACSSTLYPEFCVSSVSSFPGLSRRPNPMEIVKAVVHLSINAVKKANAKARGL-CRPGLDQRQRGALKDCFELFHDTLHELHGTLSDLKNATFMSIPQHANDLETLLSAAITNQYTCLDSFSHSKGNLKQRLLGGLRNVSHLVSNSLAMVKNISAEASSLANQRRTFPTQNRRLLSDQSDPNFMPMDSDGFPTWMSAGDRRLLQTSTSTVKPNAVVAKDGSGNYTNITEAVEKAPEKSQTRYVIHIKAGVYAENVELHKKKTNIMFIGDGMDVTVVTGNRNVKDNFTTFRSATVAVTGNGFIARDMTFENTAGPAKHQAVALRVGSDLSAFYRCSFKGYQDTLYAHSLRQFYRECNIYGTVDFIFGNSAVVFQDCNLLARRPLENQKILYTAQGRQDPNENTGISIQNCNVTAAPDLAPVKSSFEAYLGRPWKEYSRTVFMQSFLGDLIQPAGWLEWNGSFALSTLYYGEYMNRGPGAGTTNRVKWAGYRVINSSSEASQFTVSKFIEGDSWLPSTGVKYV
C0PT44______________MNSTSMNYAKFNAVSEQSPMRATRWKSGKRILVTAVASTLLVISVICLSVGIAGRFKKEKNEDDDRQIGHIKNWKSVPKVVQDACSSTLYPELCVSSVSSFPGLSDRAGPIEIVHVVLSVSIAAVEKANALARIMWTRPGLSHRKRGALQDCLELFDETLDELYETVSNLKNGSCMSAPEKVNDLETLLSAAITNQYTCLDSSARS--NLRQELQGGLMSISHLVSNSLAIVKNIATRASNVTVNS----IHNRRLLSDDQGSEFMAMESDGFPSWMSAKERSLLQSSRDNIMPNAVVAKDGSGHHTSIGDAVNAAPQKSRTRYVIHIKAGIYWENVEVNKKKTHLMFIGDGIGATVVAGNRNVKDGYTTYRSATVAVNGNGFIARDITFENTAGAAKHQAVALRVGSDFSAFYRCSFQGYQDTLYVHSLRQFYRECNVYGTVDFIFGNAAVVLQNCNLFARKPLANQQIVYTAQGRQDPNENTGISIQNCQVIAASDLIPVKRSFPAYLGRPWRQYSRTVFMQSYLGDLIQPAGWLEWNGNFALNTLYYGEFMNRGPGAGVANRVRWPGYRAIRSSNEAKQFTVSQFIKGDSWLPSTGVKYV

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
224		50	50		1.0
294	20	80			0.995493
348	20		80		0.995493
392	80		20		0.995493
448	25		75		0.996473
454	75		25		0.996473
455	75	25			0.996473
510		83		16	0.994512
597		75		25	0.996473
1006	75		25		0.996473
1031			75	25	0.996473
1090			20	80	0.995493
1124	80		20		0.995493
1380	18		81		0.999994
1401	25		75		1.0
1449		25		75	1.0
1451		25	75		1.0
1469		75	25		1.0
1470	25		75		1.0
1480	71		28		1.0
1485	28	71			1.0
1489	71			28	1.0
1494			71	28	1.0
1506		69	30		1.0
1533			36	63	1.0
1550			36	63	1.0
1555		63		36	1.0
1562		60		40	1.0
1564		60	40		1.0
1565	60			40	1.0
1569		90		10	0.90298
1573		60		40	1.0
1586		60		40	1.0
1601		44		55	1.0
1658		50		50	1.0
1662		71		28	1.0
1673		28		71	1.0
1683	28	71			1.0
1698		28		71	1.0
1711	23	7	69		1.0
1718		27	72		1.0
1748		30		70	1.0
1751		30		70	1.0
1756	30		70		1.0
1791	20		80		0.999996
1792			20	80	0.999996
1798	80		20		0.999996
1808		80	20		0.999996
1814	80	20			0.999996
1817		80		20	0.999996
1943			45	54	1.0
2091	31		68		1.0
2160	14	85			0.993533
2180	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain