SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2769

Length: 1113 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2769

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SEE4_RICCO	-	-	50%
FL-Next	tr=Transcription factor, putative; Ricinus communis (Castor bean).	-	-	50%
Blast2go	lil3 protein	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Chlorophyll a/b binding protein domain	IPR023329	-	0.0	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SEE4

Fln msg:

Fln protein: MASLLQSTACIKPFSFLDISNSRYLLKARKLEQSNFGSKSLSIQAKLEENGIIATAISAAGPASSDLEGNTSSLQTEKEGTASKFCGKFQNPKWKNGTWDVQQFSKNGRVDWDAVMDAEVQRRKCLEDNPEPSSDDEPVVFHTYMIPWWVWVKRFHLPEAELIGGRAAMIGLFMAYLVESFTGVGLVDQMDTVFGKMFLLSTVAVMLLIRKNENISELKQFVKEWVLYDKQWRATWQDKTPENPQKD*

Protein Length: 249

Fln nts: CGTCGTGGGGATGGTGGACATGTGTATTTTCACCTGGTTTTGAAATATAGTTAATGGAGATTACCATCATCATAAAATATATCACCTCCCAGAAATTGTCATTACACCCTTCAGC_-_ATGGCAAGTTTGTTGCAGTCAACAGCCTGCATAAAACCCTTTTCTTTTCTCGACATTTCCAACTCCAGGTACTTGCTCAAAGCCAGGAAACTTGAGCAATCCAATTTTGGAAGCAAAAGCTTGAGCATTCAGGCGAAGTTAGAAGAAAATGGAATAATAGCTACTGCAATAAGTGCAGCAGGCCCAGCAAGCAGCGATTTGGAGGGGAATACTTCGTCTTTGCAGACAGAAAAGGAAGGGACTGCCTCGAAGTTTTGCGGAAAATTTCAAAACCCAAAGTGGAAAAATGGTACTTGGGATGTCCAGCAGTTCTCCAAAAATGGAAGAGTTGATTGGGATGCTGTGATGGATGCTGAGGTGCAGAGGAGAAAATGTCTTGAAGATAATCCAGAACCATCCAGTGATGACGAGCCTGTTGTTTTTCACACATACATGATACCATGGTGGGTGTGGGTTAAGAGATTCCATCTACCAGAGGCTGAACTGATAGGTGGTCGTGCTGCAATGATAGGCCTTTTCATGGCTTATTTAGTTGAAAGTTTTACTGGTGTAGGACTTGTTGACCAAATGGACACTGTTTTTGGCAAAATGTTTTTGCTGAGTACCGTAGCTGTGATGCTATTGATTCGAAAGAATGAAAATATATCAGAGTTGAAGCAATTTGTGAAGGAATGGGTTTTATATGATAAGCAGTGGCGAGCAACATGGCAAGATAAGACACCAGAAAATCCACAGAAAGATTGA___AATTCCTGGCTCTATGTATTGTGCTTCACACATTTTGTCACCAGTGATTGCATTGCTAATCACAATATGCTTTCCTTTTCTGGTCTACTGTTGCATGTATTAGGTTACCATGATATTTCGTCTATTTTTAATTTGTTATTGTTTCAGCACAGTTTTTCCATAATATAGTTTCACTATAAGAACGAATGTAATAATTTGATTTCTAAGAACAAGCTAGACAACTCTTTACTTTTCTCTAGTAAGTGTTGCATTCC

Fln Alignment:

sp_v1.1_unigene2769___KPFSFLDISNSRYLLKARKLEQSNFGSKSLSIQAKLEENGIIATAISAAGPASSDLEGNTSSLQTEKEGTASKFCGKFQNPKWKNGTWDVQQFSKNGRVDWDAVMDAEVQRRKCLEDNPEPSSDDEPVVFHTYMIPWWVWVKRFHLPEAELIGGRAAMIGLFMAYLVESFTGVGLVDQMDTVFGKMFLLSTVAVMLLIRKNENISELKQFVKEWVLYDKQWRATWQDKTPENPQKD
B9SEE4______________KPTSFLTPINPPFLFSAPKASTDNGAGISAAAAAVEEPK---EAEPKAAEPSPAAVESSLGSNGAVKDAEV-KLESKFVDPRWIGGTWDLKQFQKDGSTDWDSVIDAEVRRRKWLESNPESSTNDDPVVFDTSIIPWWAWMKRFHLPEAELLNGRAAMVGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFIAVAGVLLIRKNEDIETLKKLVDETTFYDKQWQATWQDETPSSSKTE

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
172	83			16	0.994512
174	83		16		0.994512
176			16	83	0.994512
177	16			83	0.994512
181	83			16	0.994512
182		83		16	0.994512
183			16	83	0.994512
184		83	16		0.994512
186	83			16	0.994512
188			83	16	0.994512
189		16		83	0.994512
193		16		83	0.994512
194	16		83		0.994512
460		87		12	0.992554
527	28	71			1.0
529	90	10			0.90298
530			90	10	0.90298
532	10	90			0.90298
618		18	81		0.999994
619		81	18		0.999994
623	75	16			0.99999
624	75		8	16	0.99999
629	72	9		18	0.999994
634	9			72	0.999994
639	78		21		1.0
641		28	71		1.0
645			21	78	1.0
647		21		78	1.0
650	78		21		1.0
652		21		78	1.0
655	78			21	1.0
656	78	21			1.0
658		21	78		1.0
895	91			8	0.999807
987	90			10	0.90298
988		12		87	0.992554
989		14		85	0.993533
990	14			85	0.993533
991			14	85	0.993533
993	85		14		0.993533
996			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain