SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2761

Length: 1673 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2761

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Golgi SNARE 12 protein n=3 Tax=Arabidopsis RepID=GOS12_ARATH	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	qb- gos1 gs28-family	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular membrane fusion	GO:0006944	Biological Process	0.0	85%
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Golgi SNAP receptor complex, subunit 1	IPR023601	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYW3

Fln msg:

Fln protein: MGETLDAMDVGWEELRREARKLEGDLDVRLSSYAKLGGRLAHGGYADAGSSTDVIAGDRSWKSMEMEIQSLLEKLLDINDAMSRCAATATPTTSITQKLARHRDILHEFTQEFKRTKGNINAMREHAELLTSVRNDISEYKASGSMSPGPSLLRERAAIHGSISQIDDVIGQAQATRSVLSSQRTLFAEIQGKVKQLSDRFPVIRGLLGAIKRKRSKDTLILSAVIAGCTLFLILYWIAK*

Protein Length: 242

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTCGTGATCTTGGCTTCAGTGTGGGGAGAAATAAAATTAAAAACCAGGGTGGGGTTCCACTTCGCGGTGACCTGCATTATAATATCCGAGACACAGACTCTGGGAAAATTGTTCACAGTACTCTCTATGGTTTTCAAACGATGGTGATGGATTCTCAAGCGCGCACGACTGGTGCACTGCTGGATCCTCCATAACATTAATCAATTTTACAAGATAAGCAGACGGCAAGCAGATCCACTCTGCCGTTTAAAAAAAAATCGAAACCTAATTTCCGGAGATCGGAGCTGGAGGGATTTCATTTTGTTCAAGCTATGAATGATGCGCATTGTGATCTTATAAATATACATTAAGTACGAGAAACGAAGGGCCTGTGCGGGGGAAGAAAGAAA_-_ATGGGGGAAACATTGGATGCCATGGATGTGGGATGGGAAGAACTAAGAAGGGAAGCTCGTAAATTAGAAGGTGATTTGGACGTCAGACTCTCTTCTTATGCCAAGCTGGGAGGGAGGCTTGCTCACGGAGGGTATGCAGATGCTGGATCATCAACTGATGTTATTGCAGGGGATCGGTCATGGAAATCCATGGAAATGGAAATCCAGTCACTACTTGAGAAATTGTTGGATATAAATGATGCAATGAGTCGGTGTGCTGCCACTGCAACACCAACTACTTCTATTACACAAAAGCTTGCAAGGCATAGAGACATTCTTCATGAATTTACACAGGAATTTAAGCGCACGAAAGGAAACATTAATGCCATGAGGGAGCATGCTGAGCTCCTTACGTCTGTTCGTAATGACATCAGTGAGTACAAGGCTTCTGGAAGTATGTCACCTGGACCAAGTTTGCTACGAGAGAGGGCAGCCATACATGGAAGCATTTCCCAGATTGATGATGTGATTGGTCAAGCGCAAGCAACCAGAAGTGTACTAAGCTCCCAAAGAACCTTGTTCGCTGAAATTCAGGGGAAAGTCAAGCAATTAAGTGACAGATTTCCAGTTATTCGTGGCTTGTTAGGAGCCATCAAAAGGAAACGTTCCAAAGATACACTCATTCTCTCAGCTGTGATTGCTGGTTGCACGTTGTTCCTCATTCTTTACTGGATTGCTAAATGA___AATCATTGATTGACCATATAAAAATATGGGTATCATGTTTGTCGAGATATGGTTTTGACATCTTGAATTTAAGTGTCATGAAAATGATATTTGGAAGCCAAGATTTGTCCATGTATTTTGTTAGGCTTTTATTCATTTATTAGTTTATGCTCCGAGTAACTGGACGAATATGCTGCCCAATACAGTAATCATCATTATATAGTTATTACAATTGGCAGCATATCGGTTCTGCCTACTATATGCACATCTAAAATTCTTTTGGTTGGTTTGTTCTTTTGTAAACATTCATAATATTGAGCCCAACTACCTATCATCGTCTGAAATTTTACAGCTCAATGATTAAATGATATGCAGTAATTTCTGTTCCTATCAGACTGAAATGCTCCACCACAGATGTCTACCTGATAGATTATTGAATAACATGTTAATAATTTAAGTTGGTAGCATCAGCCATGGTTGACCAATGACTATCATATTTTTATTCAGAGATGTAATCTGAAGAATATCACCTAATTTCATACATTATTTTTAACCTTTT

Fln Alignment:

sp_v1.1_unigene2761___MGETLDAMDVGWEELRREARKLEGDLDVRLSSYAKLGGRLAHGGYADAGSSTDVIAGDRSWKSMEMEIQSLLEKLLDINDAMSRCAATATPTTSITQKLARHRDILHEFTQEFKRTKGNINAMREHAELLTSVRNDISEYKASGSMSPGPSLLRERAAIHGSISQIDDVIGQAQATRSVLSSQRTLFAEIQGKVKQLSDRFPVIRGLLGAIKRKRSKDTLILSAVIAGCTLFLILYWIAK
A9NYW3______________MGETMDAMDAGWEELRREARKLEGDLDVRLSSYAKLGGRLAHGG-------------DRSWKSMEMEIQSLLEKLLDINDAMSRCAATATPTTSITQKLARHRDILHEFTQEFKRTKGNINAMREHAELLTSVRNDISEYKASGSMSPGPSLLRERAAIHGNISQIDDVIGQAQATRSVLSSQRTLVAEIQGKVKQLSDRFPVIRGLLGAIKRKRSKDTLILSAVIAGCTLFLILYWIAK

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
72	80			20	0.995493
75		20	80		0.995493
78			80	20	0.995493
79		20	80		0.995493
80	20		80		0.995493
81		20		80	0.995493
104			12	87	0.992554
123	87		12		0.992554
132	88			11	0.923564
133	88		11		0.923564
134	88		11		0.923564
135			11	88	0.923564
136			11	88	0.923564
381	80			20	0.995493
695		83	16		0.994512
696			16	83	0.994512
697			16	83	0.994512
746		88		11	0.923564
747	88		11		0.923564
748		88	11		0.923564
749	88		11		0.923564
903		90		10	0.90298
905		10		90	0.90298
906	10			90	0.90298
909		90	10		0.90298
910		90	10		0.90298
911	90		10		0.90298
1057	70	11			1.0
1058	88		11		0.999952
1059	88			11	0.999952
1063	11			88	0.999952
1066	75		15	10	1.0
1067	75			25	1.0
1068	75	15	10		1.0
1070	75	10			1.0
1072	90			10	0.999898
1074	85	10			0.999793
1075		90		10	0.999898
1078	85	5		10	0.999793
1079			10	90	0.999898
1082	15			84	1.0
1454	89	10			0.999919
1509			22	66	0.999999
1511	16			83	0.994512
1515	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain