SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2751

Length: 2180 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2751
CAGGGGCAAGGGTTTGCGTGATGGTCTTGGGGTTGATTCTGCGATTGAAAATATAGCTGGTAGCGAGAATCCCCCGAAAAGGAGAAGCAATAGAATTAAAGCTAAAAATCATCAAGGCATTCTGGATAAAGAGAATAAAGATAACATTAATATCTCTGAGCCGGTGGTTTTAGAAGGTTTCAACTGTTGTGCATTAAACCTATCGGAGGTGCCCAAGCAGAAACGAGCATCCAAAAGGCAATTCATTTCAGACGGTGATACTCAACCGAGGATAAAGAAGCGCGTGTGTGTCCAAAATAGTAATGTTGTCGGTTCTCCGACAGAAAAGAACAGCGTTAACAAAGAGGATACGCTCGATGCTGTCTTGGGAAGACAGGCTGCGGAAGAATCCCAGGTTATGCCCTCTAATGATCCTCCACAAGCACTTCCATCATCTGAAATAGGAACTGATGCTGCTGAAACGGGCAACAATTCTGTTCCGAACAACCTGGATAAAATGAGAACTAAGCAGGGTTGTGTCCCAAATAGTAACACTGCCAGATCTCCGACAGTAAAGAGCACTGTTAACAAAGAGGGCATGATTGATTCTATCTTGGGAAGACGGACTATGGAAGAATCTCAGGTTGTGCGCACTACTGATCCTCCGCAGAGGCCTCCATTTCCTGTAATCGGAACTGAAGCTGTTGAATCGGATGGTAAGTCCGTTCCAAACAGACCGGTTGAAATGACTGCAGACGTGCATTTGGTTTCTGATGATGACGGACTTCCAGATGGGTTGTGCATGGACGACAAATCCTTGCAAAAGTGCCAGGCTAATGATAATGATGACCATTCAACTGGAATCACTATGGCAAAGGTGCAGAAATGGTACTCAAAACTACATGGAAAATATAAAGAGTTAAAGGCAAGGAAACTCGATGATGTGGAAGCTTATATTGAAGAGCAAAACAAAAAATTCACTGCATATGTTAACGCTTCTGAAGAATTGTTGGATCACCTTAGAAATGAGAACAATTATTTACGGTCAGAGGCTAATGAGGTTAATGGTATGCTTGCTTTAAATAGGGTAAGACAACTAGAGCACAAAAATGCTGTGTGCCAAAATGATCTACTTGTAGAACGGTCAAAGAATTTGGCCCTCATGAAGGAGGTGAACAGACTTCGGCTACTGTTGTCAGAGCAGGATAATATGAGAAAGCAGGACCAGGACATGAATCTTTCATGCAAGGACAACAGTACTCAATCTTTTCCTTTCTATGAGGGAACTCATTCCTGTTCTCCGGAAAAGTCAGTGGTTTTGCAGCCTGAAGGGCATGAGAGCATTGTGGACCTTCCCTGTACTGGATCAGATTCTTTCTTAAAACAATTTTCTTCATATTCAAGATTGAAGGAGGCTTCAGTGCAAACAGAAATTGTTCAAGACATATGCCCCAGTTGTTGCCTAGAAAGCAAGGCCACTGTTAAGGAGCAAGAAAATAGATTAGTCTGCAACAAAGCAGCTAGGAAATCTACCCAGGTTTCCAGCCAGGCTGATTTTGAGTATGCTATAACTCAGATGGATAAACAGAATCAAGAGGATACTGTGAAAGAAGATACCGCCAAGGGAGGTTGTGTGAGGGAAAATAGATTATTTCAAACACTTCTGCAGTGCATGGTTGGCCTCAAGTTCACTATTGTTGAAGAAGGAAATCAGTTAGAGCTGTCAATACTCCAGGAATCAAGTGGTTATTCGTTTAAATTGAAATGTCTATCTGGTGAAGACGATCCACATTTTAGGGAAAATGGGGAGCTACTTTATCACACGGTCTCGCTAGGAACATTGCAAAAAGTTGCTCCAGCTTGGATGAAAGAGGATATTATTTTTAGTATAGGCCAAGTCAATATATTTTTTGACAGAATATTGCAAGTGACTAATGGACGTGGGCACAATTTATTGGTAAGATGATATTAAGACGCAGATTCTCATTTCACAATCTGCTATATATCTCTGTTCTTATGATTATTTTTCCAGGGACAGGTCTCTCACACCCCCATTGGTAGATTTTCTGTATTGTTATCAGAAGAGGATGGATAATAAATGATCCACCTTTCTTGTAAAAACGAGTTTTTCATAATATATTTTTCAGATGTATAGCAAGATTGTGCATGTTTGCAGTTTCTGATTCATATCTGAAATTCAG

Ace file of the UniGene sp_v1.1_unigene2751

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TTN9; TTN9 (TITAN9)	-	-	8.0e-19	27%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	27%
Blast2go	unnamed protein product [Vitis vinifera]	-	-	1.33605e-20	46%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9RUL0

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 516 - 366

Fln protein: MPSNDPPQALPSSEIGTDAAETGNNSVPNNLDKMRTKQGCVPNSNTARSPTVKSTVNKEGMIDSILGRRTMEESQVVRTTDPPQRPPFPVIGTEAVESDGKSVPNRPVEMTADVHLVSDDDGLPDGLCMDDKSLQKCQANDNDDHSTGITMAKVQKWYSKLHGKYKELKARKLDDVEAYIEEQNKKFTAYVNASEELLDHLRNENNYLRSEANEVNGMLALNRVRQLEHKNAVCQNDLLVERSKNLALMKEVNRLRLLLSEQDNMRKQDQDMNLSCKDNSTQSFPFYEGTHSCSPEKSVVLQPEGHESIVDLPCTGSDSFLKQFSSYSRLKEASVQTEIVQDICPSCCLESKATVKEQENRLVCNKAARKSTQVSSQADFEYAITQMDKQNQEDTVKEDTAKGGCVRENRLFQTLLQCMVGLKFTIVEEGNQLELSILQESSGYSFKLKCLSGEDDPHFRENGELLYHTVSLGTLQKVAPAWMKEDIIFSIGQVNIFFDRILQVTNGRGHNLLVR*

Protein Length: 517

Fln nts: CAGGGGCAAGGGTTTGCGTGATGGTCTTGGGGTTGATTCTGCGATTGAAAATATAGCTGGTAGCGAGAATCCCCCGAAAAGGAGAAGCAATAGAATTAAAGCTAAAAATCATCAAGGCATTCTGGATAAAGAGAATAAAGATAACATTAATATCTCTGAGCCGGTGGTTTTAGAAGGTTTCAACTGTTGTGCATTAAACCTATCGGAGGTGCCCAAGCAGAAACGAGCATCCAAAAGGCAATTCATTTCAGACGGTGATACTCAACCGAGGATAAAGAAGCGCGTGTGTGTCCAAAATAGTAATGTTGTCGGTTCTCCGACAGAAAAGAACAGCGTTAACAAAGAGGATACGCTCGATGCTGTCTTGGGAAGACAGGCTGCGGAAGAATCCCAGGTT_-_ATGCCCTCTAATGATCCTCCACAAGCACTTCCATCATCTGAAATAGGAACTGATGCTGCTGAAACGGGCAACAATTCTGTTCCGAACAACCTGGATAAAATGAGAACTAAGCAGGGTTGTGTCCCAAATAGTAACACTGCCAGATCTCCGACAGTAAAGAGCACTGTTAACAAAGAGGGCATGATTGATTCTATCTTGGGAAGACGGACTATGGAAGAATCTCAGGTTGTGCGCACTACTGATCCTCCGCAGAGGCCTCCATTTCCTGTAATCGGAACTGAAGCTGTTGAATCGGATGGTAAGTCCGTTCCAAACAGACCGGTTGAAATGACTGCAGACGTGCATTTGGTTTCTGATGATGACGGACTTCCAGATGGGTTGTGCATGGACGACAAATCCTTGCAAAAGTGCCAGGCTAATGATAATGATGACCATTCAACTGGAATCACTATGGCAAAGGTGCAGAAATGGTACTCAAAACTACATGGAAAATATAAAGAGTTAAAGGCAAGGAAACTCGATGATGTGGAAGCTTATATTGAAGAGCAAAACAAAAAATTCACTGCATATGTTAACGCTTCTGAAGAATTGTTGGATCACCTTAGAAATGAGAACAATTATTTACGGTCAGAGGCTAATGAGGTTAATGGTATGCTTGCTTTAAATAGGGTAAGACAACTAGAGCACAAAAATGCTGTGTGCCAAAATGATCTACTTGTAGAACGGTCAAAGAATTTGGCCCTCATGAAGGAGGTGAACAGACTTCGGCTACTGTTGTCAGAGCAGGATAATATGAGAAAGCAGGACCAGGACATGAATCTTTCATGCAAGGACAACAGTACTCAATCTTTTCCTTTCTATGAGGGAACTCATTCCTGTTCTCCGGAAAAGTCAGTGGTTTTGCAGCCTGAAGGGCATGAGAGCATTGTGGACCTTCCCTGTACTGGATCAGATTCTTTCTTAAAACAATTTTCTTCATATTCAAGATTGAAGGAGGCTTCAGTGCAAACAGAAATTGTTCAAGACATATGCCCCAGTTGTTGCCTAGAAAGCAAGGCCACTGTTAAGGAGCAAGAAAATAGATTAGTCTGCAACAAAGCAGCTAGGAAATCTACCCAGGTTTCCAGCCAGGCTGATTTTGAGTATGCTATAACTCAGATGGATAAACAGAATCAAGAGGATACTGTGAAAGAAGATACCGCCAAGGGAGGTTGTGTGAGGGAAAATAGATTATTTCAAACACTTCTGCAGTGCATGGTTGGCCTCAAGTTCACTATTGTTGAAGAAGGAAATCAGTTAGAGCTGTCAATACTCCAGGAATCAAGTGGTTATTCGTTTAAATTGAAATGTCTATCTGGTGAAGACGATCCACATTTTAGGGAAAATGGGGAGCTACTTTATCACACGGTCTCGCTAGGAACATTGCAAAAAGTTGCTCCAGCTTGGATGAAAGAGGATATTATTTTTAGTATAGGCCAAGTCAATATATTTTTTGACAGAATATTGCAAGTGACTAATGGACGTGGGCACAATTTATTGGTAAGATGATATTAAGACGCAGATTCTCATTTCACAATCTGCTATATATCTCTGTTCTTATGATTATTTTTCCAGGGACAGGTCTCTCACACCCCCATTGGTAGATTTTCTGTATTGTTATCAGAAGAGGATGGATAATAAATGATCCACCTTTCTTGTAAAAACGAGTTTTTCATAATATATTTTTCAGATGTATAGCAAGATTGTGCATGTTTGCAGTTTCTGATTCATATCTGAAATTCAG

Fln Alignment:

sp_v1.1_unigene2751___YSKLHGKYKELKARKLDDVEAYIEEQNKKFTAYVNASEELLDHLRNENNYLRSEANEVNGMLALNR---------------VRQLEHKNAVCQNDLLVERSKNLALMKEVNRLRLLLSEQDNMRKQDQDMNLSCK----DNSTQSFPFYEGTHSCSPEKSVVLQPEGHESIVDLPCTGSDSFLKQFSSYSRLKEASVQTEIVQDICPSCCLESKATVK-EQENRLVCNKAARKSTQVSSQADFEYAITQMDKQNQED------TVKEDTAKGGCVRENRL----FQTLLQCMVGLKFTIVEEGNQLELSILQESSGYSFKL---KCLSGEDDPHFRENGELLYHTVSLGTLQKVAPAWMKEDIIFSIGQVNIFFDRILQV
B9RUL0______________YAKLYNKYDALKKKRISELDEISKDQEVNFLNYVSAAEELIQHLKNENNSLSAQVSELRSKVASIRHVYPNVVFLLVVAPLCSTKDEECARYQKQLMEESQKNKVLYEEVERLQKLQEQFSFSSKHGTDDNKQLKMLQIAHVTSGEVISESTRRMTIKRSREASAE-KEGFITPDRSNQDDLL--------VRESAKDPSAVRRRSGEAGVESDDFISPDQSNR------DDVSLRVSANDPSRLTVSSGDLGNEQEPACCGRTVGR-SGGGGFVTDNGSTNCQFQALIECLLGMKLSTANQTEEICVSALHQSSGYSFSLTWVKKAAGQEP-------ELLYRPSTLGTFERVAPEWMRSVIKFSTSMCPIFFERVASV

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
631		85		14	0.993533
1163	20			80	0.995493
1165		80	20		0.995493
1557			87	12	0.992554
1558	87		12		0.992554
1559			12	87	0.992554
1643			14	85	0.993533
1649	85			14	0.993533
1651	14			85	0.993533
1652		14	85		0.993533
1654	85			14	0.993533
1658		14		85	0.993533
1661			85	14	0.993533
1711	20	80			0.995493
1827	80		20		0.995493
1828	80		20		0.995493
1829	80		20		0.995493
1973		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain