SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2731

Length: 2430 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2731
ATGGGGATTGGAAAAGCGGTGTCATGGTACCAAGTGGGCGATGACGATTGGGCACCAAGACCAATTCGAGATCTTGTACCCGCGCGAAGGAAGCTGCGAACGGTCACGAAGTGGGTGAGCTCGGCACCAACCCTTTCCTTTTTGTGTTTTGACGCAATAAAGATCCCGCACACCCTTTGACCAAAGCCATACTGCGTGAAACAGTCGAGGTCGCGGGATTTCTTTATAGAGGGTTGATGTACCTCAACAGATTGTAAGTCCGGTGGTCCCTTAGAGTAATCTTGCCAAGACAAACACCAACGGACTATTCCATTGGACTCTTCCAGCACATTCGATTTACATACTACCCGCACAGGGCAATAGGGCCAGTTTCCGAGTTTCCCCACGCAAGTTTGACAGGATTTGGATCCGGAAACTCACGAAAGGCTTGGGCAAGACTTACAATCAACCACGTCAGATTACTCCTCAGGTTCCTCCTTTTGAAAAGTAGGCAGGGACGTCAGACTTTCACATGACCCTTGCTGAGAATTGATAAAATAGCAAGAAGTAAAGGTTCTGGACCTGGACTTATGAGATAAGATGAGTGGTGGTTTACAGATAGGCATAATGGATTTAATGAATCATCTGATTGGGGCATTGGATGCCCCCTTTTCTGGAGCAGTTGTCTTTGGAGTTCATTTTGATGGGCATTTAGTTGTGGAAGCTTTACTTGTGGCAGTGATTGTTTTCCTGCTGTTTCAAAAGAGTTACCAGCCTCAAAAACGCCCTCTTACAAGAAAGGAAATTGATCAGCTGTGTGATGAATGGGTCCCTGAGCCACTACATCCAGCCATTACAAAGGCGATGGAGATGGAGCCTCCAGTTTTAGAAGTGATGCAGGACCACGTACCATAGTCAGTGGTAAAGAAGTTATTAATCTAGCGTCAGCAAACTATCTTGGGCTAATAGGAGAAGGGAAGATAACAGAGGCATGCAATACAGCTTTGAAAAAATATGGAGTGGGATCTTGTGGTCCTCGTGGATTTTATGGAACTATTGATGTCCATCTTGACTGTGAAGCCAGAATTTCAAAATTCTTGGGAACCCCAGATTCAATTCTCTATTCATTTGGGCTTGCAACTACCTCTAATATAATTCCAGCATTTTGCAAGCGAGGAGATATAATTATTGCTGATGAAGGTGTGCATTGGGGAATTCAAAATGGACTTTTTCTTTCAAGAAGCACTGTGAAACTGTTCAAACATAATGATATGAAATCCTTGGAAAATATCTTAGAAGAGATTGCGTTGGAAGACAAACGAGTTAAAAAGGTTTTGAACCGGCGATTTATAGTAGTAGAAGCTATTTATCAGAATTCAGGTCAAATGGTTCCCTTGGATGAAATTATAAGATTGAAGGAGAAGTATAAGTTCAGAGTATTGGTTGATGAAAGCAACTCATTTGGTGTGCTGGGTAAAACTGGAAGAGGTCTTACAGAACATTATGGAATTCCGATTCAAAAAGTTGATATTATAACTGCTGGTATGGGGTATGCTTTGGCAACTACTGGAGGCTTTTGTACAGGAAGTGCAAAAGTTGTTGATCACCAGCGTCTCAGTAGTGCAGGTTACTGCTTTTCCGCATCTTTGCCACCTTATCTAGCAAGTGCTGCGATTAAAGCAATTGATGTTTTGGAAGAAAGTCATGAGCTTCTTGTCAGATTACAAGAAAATGTTACTCTTCTATGGAACGGTTTGTCACAAGTACGGGGTCTAAAAGTTATGAGTAATGCCTTGTCACCGTTGGTCTTTCTACAACTGGAAAATACATCTGGTTCATTTAAGAGTGACTCAATGTTGCTTCAGGAGATTGTTGATCATATGTTGGAGGATGAGGCAGTACTGTTGACTGTGTCTAAACGATCTTTGCTAGACAACTGCAAACTGCCAGCTGGTATCCAATTGTTCGTATCTGCAGCTCACAAAAAATCTGATCTGTTACAAGTTATTCAGTCACTGAAGAGTGTGGTGGAGTCTGTACTTGATAGAAAATGACGACTATACTTTAACCAATTTATGGTAATACACTTATGATATGATGGTGTATGGTTGATTGAAAGTTTGGAATTTGCCAGTCTGATGTCCTCAAAGATGTAATTTATTTGAAGAAAAATTACATATATTAAGACATCAAACCTTTTGTGCTCTGTATCATCTTTATATCCTGTATACTTTCATTCATGTTCAGATAGGTCAGGCAACTAATATCTTTATATATTGGCAATGGTTTTGTTTTATTTAAAATGTTTACAGTCCCTTATTTAATGTTAACTGGGATCAATGTATATTGGCAGGAGAGTTTATGTTTCATAGCATGTATTTTTATGGAAGATACTAAATTGAGAAAGTATCCTTGTGCGAGATTGATAACTGATAATAGGAGATAATTGTT

Ace file of the UniGene sp_v1.1_unigene2731

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine palmitoyltransferase I, putative (EC:2.3.1.50); K00654 serine palmitoyltransferase [EC:2.3.1.50]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	serine c-palmitoyltransferase like protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.3.1.5-	-	0.0	83%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:2.3.1.5-	-	0.0	64%

Source	GOs	Term	Type	Identity
Blast2go	cell growth	GO:0016049	Biological Process	83%
Blast2go	protein binding	GO:0005515	Molecular Function	83%
Blast2go	serine C-palmitoyltransferase activity	GO:0004758	Molecular Function	83%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Blast2go	Aminotransferase, class I/classII	IPR004839	-	83%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	83%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	83%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNV5

Fln msg: Overlapping hits, possible frame ERROR between 870 and 870,

Fln protein: MSGGLQIGIMDLMNHLIGALDAPFSGAVVFGVHFDGHLVVEALLVAVIVFLLFQKSYQPQKRPLTRKEIDQLCDEWVPEPLHPAITKAMEMEPPVLxxDAGPRTIVSGKEVINLASANYLGLIGEGKITEACNTALKKYGVGSCGPRGFYGTIDVHLDCEARISKFLGTPDSILYSFGLATTSNIIPAFCKRGDIIIADEGVHWGIQNGLFLSRSTVKLFKHNDMKSLENILEEIALEDKRVKKVLNRRFIVVEAIYQNSGQMVPLDEIIRLKEKYKFRVLVDESNSFGVLGKTGRGLTEHYGIPIQKVDIITAGMGYALATTGGFCTGSAKVVDHQRLSSAGYCFSASLPPYLASAAIKAIDVLEESHELLVRLQENVTLLWNGLSQVRGLKVMSNALSPLVFLQLENTSGSFKSDSMLLQEIVDHMLEDEAVLLTVSKRSLLDNCKLPAGIQLFVSAAHKKSDLLQVIQSLKSVVESVLDRK*

Protein Length: 486

Fln nts: ATGGGGATTGGAAAAGCGGTGTCATGGTACCAAGTGGGCGATGACGATTGGGCACCAAGACCAATTCGAGATCTTGTACCCGCGCGAAGGAAGCTGCGAACGGTCACGAAGTGGGTGAGCTCGGCACCAACCCTTTCCTTTTTGTGTTTTGACGCAATAAAGATCCCGCACACCCTTTGACCAAAGCCATACTGCGTGAAACAGTCGAGGTCGCGGGATTTCTTTATAGAGGGTTGATGTACCTCAACAGATTGTAAGTCCGGTGGTCCCTTAGAGTAATCTTGCCAAGACAAACACCAACGGACTATTCCATTGGACTCTTCCAGCACATTCGATTTACATACTACCCGCACAGGGCAATAGGGCCAGTTTCCGAGTTTCCCCACGCAAGTTTGACAGGATTTGGATCCGGAAACTCACGAAAGGCTTGGGCAAGACTTACAATCAACCACGTCAGATTACTCCTCAGGTTCCTCCTTTTGAAAAGTAGGCAGGGACGTCAGACTTTCACATGACCCTTGCTGAGAATTGATAAAATAGCAAGAAGTAAAGGTTCTGGACCTGGACTTATGAGATAAG_-_ATGAGTGGTGGTTTACAGATAGGCATAATGGATTTAATGAATCATCTGATTGGGGCATTGGATGCCCCCTTTTCTGGAGCAGTTGTCTTTGGAGTTCATTTTGATGGGCATTTAGTTGTGGAAGCTTTACTTGTGGCAGTGATTGTTTTCCTGCTGTTTCAAAAGAGTTACCAGCCTCAAAAACGCCCTCTTACAAGAAAGGAAATTGATCAGCTGTGTGATGAATGGGTCCCTGAGCCACTACATCCAGCCATTACAAAGGCGATGGAGATGGAGCCTCCAGTTTTAxxxxxxGATGCAGGACCACGTACCATAGTCAGTGGTAAAGAAGTTATTAATCTAGCGTCAGCAAACTATCTTGGGCTAATAGGAGAAGGGAAGATAACAGAGGCATGCAATACAGCTTTGAAAAAATATGGAGTGGGATCTTGTGGTCCTCGTGGATTTTATGGAACTATTGATGTCCATCTTGACTGTGAAGCCAGAATTTCAAAATTCTTGGGAACCCCAGATTCAATTCTCTATTCATTTGGGCTTGCAACTACCTCTAATATAATTCCAGCATTTTGCAAGCGAGGAGATATAATTATTGCTGATGAAGGTGTGCATTGGGGAATTCAAAATGGACTTTTTCTTTCAAGAAGCACTGTGAAACTGTTCAAACATAATGATATGAAATCCTTGGAAAATATCTTAGAAGAGATTGCGTTGGAAGACAAACGAGTTAAAAAGGTTTTGAACCGGCGATTTATAGTAGTAGAAGCTATTTATCAGAATTCAGGTCAAATGGTTCCCTTGGATGAAATTATAAGATTGAAGGAGAAGTATAAGTTCAGAGTATTGGTTGATGAAAGCAACTCATTTGGTGTGCTGGGTAAAACTGGAAGAGGTCTTACAGAACATTATGGAATTCCGATTCAAAAAGTTGATATTATAACTGCTGGTATGGGGTATGCTTTGGCAACTACTGGAGGCTTTTGTACAGGAAGTGCAAAAGTTGTTGATCACCAGCGTCTCAGTAGTGCAGGTTACTGCTTTTCCGCATCTTTGCCACCTTATCTAGCAAGTGCTGCGATTAAAGCAATTGATGTTTTGGAAGAAAGTCATGAGCTTCTTGTCAGATTACAAGAAAATGTTACTCTTCTATGGAACGGTTTGTCACAAGTACGGGGTCTAAAAGTTATGAGTAATGCCTTGTCACCGTTGGTCTTTCTACAACTGGAAAATACATCTGGTTCATTTAAGAGTGACTCAATGTTGCTTCAGGAGATTGTTGATCATATGTTGGAGGATGAGGCAGTACTGTTGACTGTGTCTAAACGATCTTTGCTAGACAACTGCAAACTGCCAGCTGGTATCCAATTGTTCGTATCTGCAGCTCACAAAAAATCTGATCTGTTACAAGTTATTCAGTCACTGAAGAGTGTGGTGGAGTCTGTACTTGATAGAAAATGA___CGACTATACTTTAACCAATTTATGGTAATACACTTATGATATGATGGTGTATGGTTGATTGAAAGTTTGGAATTTGCCAGTCTGATGTCCTCAAAGATGTAATTTATTTGAAGAAAAATTACATATATTAAGACATCAAACCTTTTGTGCTCTGTATCATCTTTATATCCTGTATACTTTCATTCATGTTCAGATAGGTCAGGCAACTAATATCTTTATATATTGGCAATGGTTTTGTTTTATTTAAAATGTTTACAGTCCCTTATTTAATGTTAACTGGGATCAATGTATATTGGCAGGAGAGTTTATGTTTCATAGCATGTATTTTTATGGAAGATACTAAATTGAGAAAGTATCCTTGTGCGAGATTGATAACTGATAATAGGAGATAATTGTT

Fln Alignment:

sp_v1.1_unigene2731___MSGGLQIGIMDLMNHLIGALDAPFSGAVVFGVHFDGHXXXXXXXXXXXXXXXXQKSYQPQKRPLTRKEIDQLCDEWVPEPLHPAITKAMEMEPPVLESDAGPRTIVSGKEVINLASANYLGLIGEGKITEACNTALKKYGVGSCGPRGFYGTIDVHLDCEARISKFLGTPDSILYSFGLATTSNIIPAFCKRGDIIIADEGVHWGIQNGLFLSRSTVKLFKHNDMKSLENILEEIALEDKRVKKVLNRRFIVVEAIYQNSGQMVPLDEIIRLKEKYKFRVLVDESNSFGVLGKTGRGLTEHYGIPIQKVDIITAGMGYALATTGGFCTGSAKVVDHQRLSSAGYCFXXXXXXXXXXXXIKAIDVLEESHELLVRLQENVTLLWNGLSQVRGLKVMSNALSPLVFLQLENTSGSFKSDSMLLQEIVDHMLEDEAVLLTVSKRSLLDNCKLPAGIQLFVSAAHKKSDLLQVIQSLKSVVESVLDRK
B8LNV5______________MSSGLRIGIMDLMNRLILALDAPFAGAVVFGVHFDGHLVVEALLVAVIVFLLFQKSYQPQKRPLTRKEIDQLCDEWVPEPLHPAITKEMEDEPPVLESDAGPRIIVSGKEVINLASANYLGLIGHGKITEACNAALKKYGVGSCGPRGFYGTIDVHLDCEARISKFLGTADSILYSYGLATTSSVIPAFCKRGDIIIADEGVQWGIQNGLFLSRSTVKLFKHNDMKALEKILEEIALEDKRVKKVLNRRFIVVEAIYQNSGQMVPLDEIIRLKEKYNFRVLVDESHSFGVLGKTGRGLTEHYGIPIQKVDIITAGMGYALATTGGFCTGSAKVVDHQRLSGAGYCFSASSPPYLASAAITAMDVLEESPELLVRLQENVTLLWKGLSQARGLKVTSNALSPLFFLQLENTSGSFKNDSMLLQEIVDRMLEDAAVLLTVSKRSLLDNCKLPAGIQLSVSAAHTKSDLLQVIQSLKSVVEAVLDRK

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
82		75	25		0.996473
83		75	25		0.996473
84		75	25		0.996473
86		75	25		0.996473
127			80	20	0.995493
128		80	20		0.995493
132	80			20	0.995493
133	80			20	0.995493
134		80	20		0.995493
135		80	20		0.995493
138			20	80	0.995493
142	20			80	0.995493
143		20		80	0.995493
145		20		80	0.995493
146	20			80	0.995493
156		80		20	0.995493
205		85		14	0.993533
206	85		14		0.993533
208			14	85	0.993533
209	42	42	14		1.0
227		42		57	1.0
244	42		57		1.0
266	57		42		1.0
273		57	42		1.0
284		88	11		0.923564
285			11	88	0.923564
286			11	88	0.923564
607	87	12			0.992554
610	87			12	0.992554
611		12		87	0.992554
613		12	87		0.992554
615			12	87	0.992554
617			12	87	0.992554
619	87		12		0.992554
623	87	12			0.992554
624	12			87	0.992554
625		87	12		0.992554
626	87		12		0.992554
627		12		87	0.992554
658		20	80		0.999996
660	80			20	0.999996
662	20	80			0.999996
663	80	20			0.999996
664		20	80		0.999996
668			20	80	0.999996
671			20	80	0.999996
674		20	80		0.999996
676		20	80		0.999996
678		20		80	0.999996
679	20	80			0.999996
1136	84		15		0.999986
1327	18		81		0.999994
1901	91			2	0.99441
2191	10			90	0.90298
2193		11		88	0.923564
2228		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain