SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2728

Length: 1456 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2728

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SHH4_RICCO	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	protein	-	-	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPV3

Fln msg:

Fln protein: MRVMGVKGLTLYHLKSHLQKYRLGKHLHMVVNLDNNKHGCSAAASKTSEMQGASSAASSMIGTNKTDALQINEAVRMQFEVQRRLHEQIEVQQHLQLRIEAQGKYLQSVLEKARETLAGHNLGSVGLEAARAEISELASKVSSECLNNAFSSLPEMPSLYKQQQHMVQAMHSLNQQSQVPDYSMESCLTSNESSEKNLDRNMQNAAKKRLRTLQNRNVPFWQTETREDASLRELSATQLGWEENLKEDEKFLSSSANPKDSDRNSIPTKGNLRERTTSFRVQTEENGYGMPDAREKQMEVNGSCVGQQAIKPDVPRSFSLQEVCRKGELAGLHRDEDESPSVSFNKLSKLTEELDLNANDDTSIASNCREFDLNGFGWSI*

Protein Length: 382

Fln nts: AATGAGAGTGATGGGTGTCAAAGGACTTACTCTGTACCACCTAAAGAGCCATCTTCAGAAATATAGGCTTGGTAAGCATCTTCACATGGTTGTTAACCTTGATAATAATAAGCATGGTTGCTCGGCAGCAGCTTCTAAGACATCTGAGATGCAAGGTGCCAGCAGTGCTGCTTCAAGCATGATAGGAACCAATAAGACAGACGCCTTGCAGATCAACGAGGCAGTCCGAATGCAGTTCGAGGTGCAAAGGCGACTGCATGAACAAATAGAGGTACAACAACATTTGCAGCTCCGAATTGAAGCTCAGGGTAAATACTTGCAGTCTGTGCTGGAGAAGGCCAGGGAAACTCTTGCTGGCCACAATTTGGGTTCTGTTGGACTAGAAGCTGCCCGTGCAGAAATCTCAGAACTGGCTTCAAAAGTGTCTAGTGAATGCCTCAACAATGCTTTTTCTAGTTTACCTGAAATGCCATCATTATACAAGCAGCAGCAACATATGGTACAGGCTATGCATAGCCTTAATCAGCAATCTCAGGTCCCAGATTATTCAATGGAGAGCTGCTTGACATCAAATGAGAGTTCTGAAAAGAATTTAGATCGGAATATGCAGAACGCTGCTAAGAAAAGATTGAGAACATTACAGAATAGAAATGTACCTTTTTGGCAGACTGAGACCAGAGAAGATGCCAGTTTGCGAGAATTGAGTGCCACGCAATTGGGTTGGGAAGAAAATCTGAAAGAAGATGAAAAGTTTTTGTCATCTTCAGCTAATCCAAAAGATTCAGATAGGAATTCAATTCCAACCAAAGGAAATTTACGAGAGAGGACAACAAGTTTTAGGGTACAAACAGAAGAAAATGGCTATGGCATGCCCGATGCAAGGGAAAAACAGATGGAAGTAAATGGATCATGTGTGGGACAACAAGCAATTAAACCAGACGTGCCTAGGAGCTTCTCTCTGCAAGAAGTTTGCCGCAAGGGTGAATTGGCAGGGCTTCATAGGGATGAAGATGAAAGTCCTTCAGTAAGCTTTAACAAGCTTTCCAAGCTCACTGAAGAATTAGACTTGAATGCTAATGATGACACCAGTATAGCGTCCAATTGCAGGGAGTTTGATTTGAATGGTTTTGGATGGAGCATATAA___GCATTAATATTAGCTAGTCATTTGAGAAATTTGTAGCTTCCATCTTTGACAAAAACCTTCATCACCCATAGAATCCTAGGTTCATGAATCAGAATCAGGAGTGTGATTTTATGGTTCTTGATATATTATCTAGAAGCTGAACTGCTAAATTATTTAGACACGGCCATCTTCCTTCTTAATATAAGCTTCTATCTTGTACATATGACTATAGCATCGTCATATGCAATGGAAACCAGATGTTATTTTTGTTACCGAGTCAGAGTAATTAGGAAATATCACTACACTTTTTGTCCAACAGAAACATGTGAAGTT

Fln Alignment:

sp_v1.1_unigene2728___MRVMGVKGLTLYHLKSHLQKYRLGKHLHMVVNLDNNKHGCSAAASKTSEMQGASSAASS-MIGTNKTDALQINEAVRMQFEVQRRLHEQIEVQQHLQLRIEAQGKYLQSVLEKARETLAGHNLGSVGLEAARAEISELASKVSSECLNNAFS-----SLPEMPSLYKQQQHMVQAMHSLNQQSQVPDYSMESCLTSNESSEKNLDRNMQNAAKKRLRTLQ-NRNVPFWQTETREDASLRELSATQLGWEENLKEDEKFLSSSANPKDSDRNSIPTKGNLRERTTSFRVQTEENGYGMPDAREKQ
C0PPV3______________MRAMGVKGLTLYHLKSHLQKYRLGKQPFKEFSDQSNKD-----ASCLTEGQGASTCSSSKMINQDVNESFQITEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKACQALTDQTIASAGLEAARQELSELAMKVSNGCLSSPFEDVNLPSLPEIPQIHVDES-------TLHQQTQLTDCSVDSCLTSNESTPKIPQEDMQAVRNKRSRPLYCDNDALVWDNDVRNDLRLQELSAACLSQVGNLNEEEQMPSVSPIESHSERNSMKDEFDTRMTKT-------KDGIGNPAERELQ

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
619		20		80	0.995493
1002	80		20		0.995493
1262	20		80		0.995493
1340		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain