SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2725

Length: 1964 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene2725
CGTCGTGACCTTGGCTGTCACTCATGTGTGTTCGTCGTGACCTTGGCTGTCACTCAGCTTTTCTTCCAATTCCCAATAGTCAAGCAGCACTCCATTTTCTTCACAGTGTATTCTGCCCTGCCATTGCAATCATTTCATCGCTACTCGACAATATTAAACCTTAATCAATCTTTGTTGTCACTCCATTGATTATCTCAATCTCAACTCAGGTGGGCATAATTTATTTAGATATAGAAAGACAGACTTTTAAGATAATAAAGCTTTCGTACTCTGTGCCTTCAATGTAACTTCTGATAGATGGTGGTGTACCGACACCAGCAGGACATTAGCGGAGCACAACCCTGCCGCCTTCCTTCACTTCTCCCTTTCTCTGTGAAAGCTTATCTCTTGGCGGTGGTAGCTGTTTGAAACATAGACTGGTGATGGATTAGCGGCCCAGAAAGGCAAGGCATGGGAGAATACTGGGCGTACGCAGGGCCTTTCGGGATCTGTGAAGTGTTTATTTTGTAAGATGAGAAGCTTGTGGCTTACAGATTCGTGCAAAGATAGCCAGGTTCATGCCCTCAACCCCATTGAAAGGACTCCCCAGTCCTGGCTCCAAGTCGAAAGAGGAAAGCTTGCGAAAATGTCTTGCTCCGATCCTTCCTCCTTTTACAATTCATCACTTATCAAACTTGCAGAACCTCCCATAGAGCCGAATTTCAAACCACTAGATTATGTAGAAGTGCTGGCTCAGATTCATGAAGAACTTGAAGCTTCTCCCAACCATGGAAAGTCAGACCTTTATTTATTGCAATCTCAAGTTTTCAGGGGCCTTGGTGAAGTGAAACTGCTCCGGCGGAGTCTCCAATCTGCCTGGAAACATGCTAGTACTGTTCATGAGAAGCTTGTATATGCAGCCTGGCTGAAACACGAGAAACAAGGGGAGGAGATGATCAGTGACCTGCTCTCTCAGTGTAGCAAATGCCTGCAGGAATTTACTCCCTTGGATATTATTTCAGAATTTTCACCAAAAGCAGCTTCAAATGATTTCTCATATTCTCCCATTTCGAAAAACCAGGAACCTCTACTTCAATGTGGCTCTATGTCAGATCCTTCTTCAGATATTGTTGTTTTCCACATCGGAGAGGATGAAATAGTTTGTAATCGGCAGAAAGTTGCCACAATGTCTGCTCCCTTTCATGCCATGCTGAATGGTTGTTTCACAGAAGCACGGAAAAGAGACATAGATTTTTCCGATAATGGTATTTCTGCAAGAGGCATGCGTGCCATTTGTAAATTTAGTGAGACAGGTAAACTAAGTGATGATCTGTCACCAGATGTCTTGTTAGATATCCTGGCTTTTGCAAACAAGTTTTGTTGTGAGCAATTAAAGGATGCTTGTGACAGAAATCTGGCATCTTTAATTCATACTGAACAGGATGCAATAACTTTTATGGAATATGGCTTGGAGGAGGGTTCTCAGGTGCTAGTGGCTTCCTGCCTACAGGTGATCTTGCGTGAACTTCCTTATTCTTTACAACATGAACAAGTTGCAAAACTCTTTTACAACACTGACATGCGGAAGAGGTCAATAATGGCAGGCAGTGCTTCATTTGCTTTATATTCTTTATTAAGTGATGTTGCTATGAAGGATGATCTGAAATCAGATAAATCAGCCTTTTTCCTAGAATGCTTAAGAGAGTGTGCAACAACTAGCAGACAAAAATCATTGGCTGTCCATCAGCTGGGTTGTGTGATGCTTGCAAGAAGAGAGTATGATAAGGCTGAAAGGTTATTCGATGCAGCTGTAAATGAAGGCCACGTTTACTCTCATGCAGGTCTAGCAAGAGCAAAGTATAAGAGAGGATATAAGCATGCAGCCTATGATGAAATCAGTACTTTATTATCTTCTTGCAAGCAGTTAGGTTGGATGTATCAAGAAAGGTCTTTGTATTGTGATGGGAAAGAAAATGGTTGGACTT

Ace file of the UniGene sp_v1.1_unigene2725 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=ETO1-like protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	52%
Blast2go	ethylene overproducer1-like protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of ethylene biosynthetic process	GO:0010364	Biological Process	0.0	68%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	68%

Source	InterPros	Term	Type	Identity
Blast2go	BTB/POZ-like	IPR000210	-	68%
Blast2go	BTB/POZ fold	IPR011333	-	68%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	68%
Blast2go	BTB/POZ	IPR013069	-	68%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9ZQX6

Fln msg: Distance to subject end: 422 aas, your sequence is shorter than subject: 484 - 888

Fln protein: MRSLWLTDSCKDSQVHALNPIERTPQSWLQVERGKLAKMSCSDPSSFYNSSLIKLAEPPIEPNFKPLDYVEVLAQIHEELEASPNHGKSDLYLLQSQVFRGLGEVKLLRRSLQSAWKHASTVHEKLVYAAWLKHEKQGEEMISDLLSQCSKCLQEFTPLDIISEFSPKAASNDFSYSPISKNQEPLLQCGSMSDPSSDIVVFHIGEDEIVCNRQKVATMSAPFHAMLNGCFTEARKRDIDFSDNGISARGMRAICKFSETGKLSDDLSPDVLLDILAFANKFCCEQLKDACDRNLASLIHTEQDAITFMEYGLEEGSQVLVASCLQVILRELPYSLQHEQVAKLFYNTDMRKRSIMAGSASFALYSLLSDVAMKDDLKSDKSAFFLECLRECATTSRQKSLAVHQLGCVMLARREYDKAERLFDAAVNEGHVYSHAGLARAKYKRGYKHAAYDEISTLLSSCKQLGWMYQERSLYCDGKENGWT

Protein Length: 485

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTGTGTTCGTCGTGACCTTGGCTGTCACTCAGCTTTTCTTCCAATTCCCAATAGTCAAGCAGCACTCCATTTTCTTCACAGTGTATTCTGCCCTGCCATTGCAATCATTTCATCGCTACTCGACAATATTAAACCTTAATCAATCTTTGTTGTCACTCCATTGATTATCTCAATCTCAACTCAGGTGGGCATAATTTATTTAGATATAGAAAGACAGACTTTTAAGATAATAAAGCTTTCGTACTCTGTGCCTTCAATGTAACTTCTGATAGATGGTGGTGTACCGACACCAGCAGGACATTAGCGGAGCACAACCCTGCCGCCTTCCTTCACTTCTCCCTTTCTCTGTGAAAGCTTATCTCTTGGCGGTGGTAGCTGTTTGAAACATAGACTGGTGATGGATTAGCGGCCCAGAAAGGCAAGGCATGGGAGAATACTGGGCGTACGCAGGGCCTTTCGGGATCTGTGAAGTGTTTATTTTGTAAG_-_ATGAGAAGCTTGTGGCTTACAGATTCGTGCAAAGATAGCCAGGTTCATGCCCTCAACCCCATTGAAAGGACTCCCCAGTCCTGGCTCCAAGTCGAAAGAGGAAAGCTTGCGAAAATGTCTTGCTCCGATCCTTCCTCCTTTTACAATTCATCACTTATCAAACTTGCAGAACCTCCCATAGAGCCGAATTTCAAACCACTAGATTATGTAGAAGTGCTGGCTCAGATTCATGAAGAACTTGAAGCTTCTCCCAACCATGGAAAGTCAGACCTTTATTTATTGCAATCTCAAGTTTTCAGGGGCCTTGGTGAAGTGAAACTGCTCCGGCGGAGTCTCCAATCTGCCTGGAAACATGCTAGTACTGTTCATGAGAAGCTTGTATATGCAGCCTGGCTGAAACACGAGAAACAAGGGGAGGAGATGATCAGTGACCTGCTCTCTCAGTGTAGCAAATGCCTGCAGGAATTTACTCCCTTGGATATTATTTCAGAATTTTCACCAAAAGCAGCTTCAAATGATTTCTCATATTCTCCCATTTCGAAAAACCAGGAACCTCTACTTCAATGTGGCTCTATGTCAGATCCTTCTTCAGATATTGTTGTTTTCCACATCGGAGAGGATGAAATAGTTTGTAATCGGCAGAAAGTTGCCACAATGTCTGCTCCCTTTCATGCCATGCTGAATGGTTGTTTCACAGAAGCACGGAAAAGAGACATAGATTTTTCCGATAATGGTATTTCTGCAAGAGGCATGCGTGCCATTTGTAAATTTAGTGAGACAGGTAAACTAAGTGATGATCTGTCACCAGATGTCTTGTTAGATATCCTGGCTTTTGCAAACAAGTTTTGTTGTGAGCAATTAAAGGATGCTTGTGACAGAAATCTGGCATCTTTAATTCATACTGAACAGGATGCAATAACTTTTATGGAATATGGCTTGGAGGAGGGTTCTCAGGTGCTAGTGGCTTCCTGCCTACAGGTGATCTTGCGTGAACTTCCTTATTCTTTACAACATGAACAAGTTGCAAAACTCTTTTACAACACTGACATGCGGAAGAGGTCAATAATGGCAGGCAGTGCTTCATTTGCTTTATATTCTTTATTAAGTGATGTTGCTATGAAGGATGATCTGAAATCAGATAAATCAGCCTTTTTCCTAGAATGCTTAAGAGAGTGTGCAACAACTAGCAGACAAAAATCATTGGCTGTCCATCAGCTGGGTTGTGTGATGCTTGCAAGAAGAGAGTATGATAAGGCTGAAAGGTTATTCGATGCAGCTGTAAATGAAGGCCACGTTTACTCTCATGCAGGTCTAGCAAGAGCAAAGTATAAGAGAGGATATAAGCATGCAGCCTATGATGAAATCAGTACTTTATTATCTTCTTGCAAGCAGTTAGGTTGGATGTATCAAGAAAGGTCTTTGTATTGTGATGGGAAAGAAAATGGTTGGACTT

Fln Alignment:

sp_v1.1_unigene2725___MRSLWLTDSCKDSQVHALNPIERTPQSWLQVERGKLAKMSCSDPSSFYNSSLIKLAEPPIEPNFKPLDYVEVLAQIHEELEASPNHGKSDLYLLQSQVFRGLGEVKLLRRSLQSAWKHASTVHEKLVYAAWLKHEKQGEEMISDLLSQCSKCLQEFTPLDIISEF------SPKAASNDFSYSPISKNQEPLLQCGSMSDPSSDIVVFHIGEDEIVCNRQKVATMSAPFHAMLNGCFTEARKRDIDFSDNGISARGMRAICKFSETGKXXXXXXXXXXXXXLAFANKFCCEQLKDACDRNLASLIHTEQDAITFMEYGLEEGSQVLVASCLQVILRELPYSLQHEQVAKLFYNTDMRKRSIMAGSASFALYSLLSDVAMKDDLKSDKSAFFLECLRECATTSRQKSLAVHQLGCVMLARREYDKAERLFDAAVNEGHVYSHAGLARAKYKRGYKHAAYDEISTLLSSCK-QLGWMYQERSLYCDG
Q9ZQX6______________MRTFYPSDSCKESQLDSLNP-----QSWLQVERGKLSS-SASSSAPLCRESFIKVPEPQILPHYKPLDYVEVLAQIHEELDTCPLQERSILYLLQYQVFRGLGETKLRRRSLQSAWQEATTVHEKVVFGSWLRYEKQGEEVITDLLSSCGKYSEEFVPLDIASYFPATTASSPEAASVKTNRS-VSKN-----------------VVFKIGEEKIACQRRKIASLSAPFHAMLYGNFTESLLDEIDMSENHVSSSAMRVVRDFSVVG-VLIGVSKNLLLEVLVFANKFCCERLKDACDRELASLISSMECAIELMDFALEENSPILASSCLQVFLYEMPDSLNDERVVEVLTRVNRSQVSTMAGKAPFSLYSCLSEVSMCIDPRSDRTLGFLEKLVDFAENDRQQVLGFHRLGCMRLLRKEYREAEEAFETAFNLGHVYSATGLARLGYIQGHRLWAYEKLSSVISSVSPPLGWMYQERSFYCEG

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
1593		87		12	0.992554
1644			83	16	0.999991
1645			16	83	0.999991
1646	16	83			0.999991
1647		83	16		0.999991
1650	16	83			0.999991
1651		16		83	0.999991
1652	16		83		0.999991
1655		16	83		0.999991
1657	16	83			0.999991
1665		83	16		0.999991
1668		83	16		0.999991
1694	90			10	0.90298
1695		90	10		0.90298
1698	90			10	0.90298
1704	90	10			0.90298
1709			10	90	0.90298
1711		10		90	0.90298
1713		11		88	0.923564
1714			11	88	0.923564
1718			11	88	0.923564
1746	87		12		0.992554
1748	87		12		0.992554
1750			12	87	0.992554
1752	12			87	0.992554
1756	12	87			0.992554
1758		87	12		0.992554
1759		87	12		0.992554
1761		12	87		0.992554
1764	12			87	0.992554
1765		12		87	0.992554
1768	14		85		0.993533
1775	85			14	0.993533
1776			14	85	0.993533
1779			14	85	0.993533
1781	85	14			0.993533
1783	14			85	0.993533
1789		14	85		0.993533
1792	85		14		0.993533
1793	71		28		1.0
1795	57	28	14		1.0
1800			33	66	1.0
1802		33	66		1.0
1804		33		66	1.0
1805			33	66	1.0
1807	66	33			1.0
1860	25	75			0.996473
1894	25		25		0.995533
1897	25		75		0.996473
1916			66	33	0.997452
1917	33			66	0.997452
1918	33		66		0.997452
1920		66		33	0.997452
1924		66		33	0.997452
1925	66			33	0.997452
1926	66		33		0.997452
1934	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain