SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2679

Length: 3454 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2679
CGTCGTGACCTTGGCTGTCACTGCATAGTTGAGTGGAGTGGTGGTTGAATCTAAGCCACCTTGCCAATCGTAGAAACTAAGCTACAGCCGCTCTCTGTTAGCTAAACTTGGCTCATCACAGCAGTTGGGCGGAACCTATCAGAGATTGCGAATATTTAGCTACAAAAGGCCCAGAGCTCCCCTACAATGCCAAAGCAGGTTCAGCACTGTGTGGAGCAGCAATAAGCAGCAGCAGCATTGCTACTGCAGACAGTGCTGTATTGGTTGTTTGTGAAAAAATCCAAATCCAGATTGGATTAGTACACTTCAAATGCCACCTGCTATCAAGAGGCATTAAGGTAGAGGGTATAGAATATTTGAGTGAGAGAGAAAGGCCTAGGCTTGCATGTCAAACGGCTGCCTCTACATTGCAGAAAGTGTCCAGATCTCATTGCTCCTGCAGGTAGAGTGGAGCCGGAGCCGTTTTGACTGATCAGTATTACTGTTGTTTCCATGTCCCAATAAGAATAGACTGTTAACGAATGAATTTCAAAACCCACATTGCCGAATTCAGTGGGGTATAACTGTCAGGGACAATTCATTTCTTGTTGTCTTCATTCATTAACAAGGGACTCAGAGGCCATGGGCTTGTAGGAGCAAGGGGAGGAGAATAATAGGAGGAAGAAGATCTCTGATATCCATACTTATCAGGGCTGGGCAGGCCAGATCCAGATCTTTGGCAAGGTATATTGGGCTGCGGTACAATTTGGTGCAGAGGATCTAGGTGGCCAGCCTGGTTTTCTGATTCAATATGGATCGGTTATCTTCTGCAAATCTCCTTCCAGAGTCATTTCCGAGCAATGACATGACCGAACAGCTTGCATTGATATGGAGGCAGATTAGAGCGCCCCTTATTGCTCCGTTGCTGAGATTTGCTGTTGGTATTTGCTTGATAATGTCTCTGATGCTGTTTATTGAGAGGGTGTACATGGCTGTTGTTATAGTGCTGGTGAAGCTGTTTGGGAAGAGGCCTGAGAAGAGATACAAATGGGAGCCTATAAGAGATGACATAGAGCTTGGAAACAGTGCATATCCAATGGTTCTGGTGCAGATTCCCATGTACAATGAAAAAGAGGTTTATCAGCTTTCCATTGGAGCAGCTTGTGGGCTTTCATGGCCTTCAGACAGGATTATCATTCAAGTTCTTGATGATTCTACTGACCCAGCTATCAAGGAGTTGGTAACAATGGAGTGCCAGAGATGGGCTAGCAAGGGAATAAACATCAAATATGAGATCAGAGACAACAGGAATGGTTACAAGGCGGGTGCTCTGAAAGAAGGAATGAAACGCAGCTATGTGAAGGAATGTGACTATGTAGCCATCTTCGATGCAGATTTCCAGCCAGAACCAGACTACCTATGGCGAACGATTCCATTCCTGGTGCACAATCCTGAACTGGCTCTTGTTCAGGCCCGTTGGAAATTCGTGAATTCGGATGAATGCTTGATGACAAGAATGCAGGAGATGTCCTTGGATTATCATTTCACTGTCGAACAAGAAGTGGGCTCTTCTACTCACGCCTTCTTTGGGTTCAACGGTACTGCTGGAGTTTGGCGAATCAATGCTCTAAATGAAGCTGGTGGCTGGAAAGACCGCACAACTGTGGAAGATATGGATTTGGCTGTTCGGGCAAGTTTGAAGGGATGGAAGTTTGTTTTCGTGGGTGATCTTAAAGTCAAGAATGAATTACCTAGTACCTTCAAAGCATACCGCTATCAGCAGCACCGTTGGTCTTGTGGTCCAGCAAATTTGTTTAGAAAGATGGTCAAGGAGATCCTTAGAAACAAGAAAGTTACACCGTGGAAGAAGTTCCATGTCATTTATGCCTTCTTTTTTGTAAGGAAGATTGTGGCTCACATTGTCACATTCGCCTTTTACTGTGTTGTGATTCCTGCAACTGTACTTGTTCCGGAAGTCCAAGTACCCAAATGGGGGGCTGTTTACATTCCTTCAATCATCACTTTACTAAATGCAGTAAGCACTCCCAAATCTCTGCATTTGCTTGTTTTCTGGATCTTGTTTGAAAATGTGATGTCTCTGCACCGAACCAAGGCAACTTTCATTGGATTATTAGAAGCTGGCCGTGTCAATGAATGGGTTGTGACAGAAAAGCTTGGAGATGCCATGAAGCATAAATCTGGGAAGCAGATAAAAAAATCTCGCTCAAGAATTGGAGAAAGACTCCACGTCTTGGAACTTTTCGCTGGCGTCTATCTCTTCTTCTGTGCATCTTATGATCTCGCATTTGGAAAAAATCACTTCTATATCTATCTTTATCTGCAAGCTGCAGCGTTCTTCGTGATGGGATTTGGATACATTGGAACATTTGTACCAACATCCTAGGAGGCTAGGACTACATAAAACGGAGGTGCCAGCCTGTTCTGTCTCTGTGTGGCACAGGCCTGATTGGAGTTCAATTATCTATGTATAGATTGTATCTTCTCATTCTTTTTAGGAGGATAAGTACATGGTATAGTCCCCAAAGGGACAGTGCTTCTCATGCATATCTGTTAGCTTATGCGAGAAGTCAATTTTAGCGCTATGTATGTTACCAATAAAATCAGATTCAGGTTGTTTCTCTGATGAGGGTGTATTGGGTGTTTCAAATAGTCATTCAATGGTGATTAATCTCAGATGCTCCTGTACTTGAGGCAAGAGTCAAGATGGTTTAGTCTTTAGTATATTTAAGTTAAGATCTGCTTAACTTTGAAGACGGGATGAGATGCATTTTATGGAACTGCATTACAAGAAAAAAATATCTTGAAATTAGTTTGTTGTATTCTTTGTAACAGAGGGAAGGATATCATGCAGAGGACTCAGCTCAAAGGAGACACTTGTAATCAAACTGGCCTTTACATCCTTAGTTTCAGAGGTAATTGATTCCTGAGAGATTCTTTGTTAGGTCAGCGCCATTCTTAAGATTTATAAACATGCTCGTGGCAATGTGTTACACATAAATTAAAGGTTGTTGAAGTTGTGAGGAAATTGTGATAGGCAACTCCTATGAAAGAGAGATAAGATAGCTACTCGGTGGGAAGTTGAGAGAGAAGATTGATGGATTTCTTCTTTCGTTGCCCCTCCGTACCCTTTGTCTATGATGATAAAAATATAGAAATTTGGATCTGACTATCTGTTTCATGTAATGTGAGTGGGGAAACCCATATATATGGCCTGGCCTGCAATAAAATTCTTTGGATTATCACTTTGACCGAAATGTGTAAATGATTGTCTGAAATTGTTGAGCAATTAATGGAACTTGAATTATATTTTTTTCCTTTGAAAATTTCAGTTTCAGGTTTGGATTGAAATTGAAGCTTTGCAAATGTGTTCTTCCAAGATTGTAAAGTGGCGTTTGAGTGCCAATCCGTGGAATGAATGATTATGTCTGCAAATATGCAGTTGCAGGGCTAATTT

Ace file of the UniGene sp_v1.1_unigene2679

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulose synthase-like A1 n=1 Tax=Pinus taeda RepID=A3QT94_PINTA	-	-	98%
FL-Next	tr=Cellulose synthase-like A1; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	response to bacterium	GO:0009617	Biological Process	89%
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	89%
Blast2go	mannan synthase activity	GO:0051753	Molecular Function	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 2	IPR001173	-	0.0	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A3QT94

Fln msg:

Fln protein: MDRLSSANLLPESFPSNDMTEQLALIWRQIRAPLIAPLLRFAVGICLIMSLMLFIERVYMAVVIVLVKLFGKRPEKRYKWEPIRDDIELGNSAYPMVLVQIPMYNEKEVYQLSIGAACGLSWPSDRIIIQVLDDSTDPAIKELVTMECQRWASKGINIKYEIRDNRNGYKAGALKEGMKRSYVKECDYVAIFDADFQPEPDYLWRTIPFLVHNPELALVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRINALNEAGGWKDRTTVEDMDLAVRASLKGWKFVFVGDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVKEILRNKKVTPWKKFHVIYAFFFVRKIVAHIVTFAFYCVVIPATVLVPEVQVPKWGAVYIPSIITLLNAVSTPKSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNEWVVTEKLGDAMKHKSGKQIKKSRSRIGERLHVLELFAGVYLFFCASYDLAFGKNHFYIYLYLQAAAFFVMGFGYIGTFVPTS*

Protein Length: 532

Fln nts: CGTCGTGACCTTGGCTGTCACTGCATAGTTGAGTGGAGTGGTGGTTGAATCTAAGCCACCTTGCCAATCGTAGAAACTAAGCTACAGCCGCTCTCTGTTAGCTAAACTTGGCTCATCACAGCAGTTGGGCGGAACCTATCAGAGATTGCGAATATTTAGCTACAAAAGGCCCAGAGCTCCCCTACAATGCCAAAGCAGGTTCAGCACTGTGTGGAGCAGCAATAAGCAGCAGCAGCATTGCTACTGCAGACAGTGCTGTATTGGTTGTTTGTGAAAAAATCCAAATCCAGATTGGATTAGTACACTTCAAATGCCACCTGCTATCAAGAGGCATTAAGGTAGAGGGTATAGAATATTTGAGTGAGAGAGAAAGGCCTAGGCTTGCATGTCAAACGGCTGCCTCTACATTGCAGAAAGTGTCCAGATCTCATTGCTCCTGCAGGTAGAGTGGAGCCGGAGCCGTTTTGACTGATCAGTATTACTGTTGTTTCCATGTCCCAATAAGAATAGACTGTTAACGAATGAATTTCAAAACCCACATTGCCGAATTCAGTGGGGTATAACTGTCAGGGACAATTCATTTCTTGTTGTCTTCATTCATTAACAAGGGACTCAGAGGCCATGGGCTTGTAGGAGCAAGGGGAGGAGAATAATAGGAGGAAGAAGATCTCTGATATCCATACTTATCAGGGCTGGGCAGGCCAGATCCAGATCTTTGGCAAGGTATATTGGGCTGCGGTACAATTTGGTGCAGAGGATCTAGGTGGCCAGCCTGGTTTTCTGATTCAAT_-_ATGGATCGGTTATCTTCTGCAAATCTCCTTCCAGAGTCATTTCCGAGCAATGACATGACCGAACAGCTTGCATTGATATGGAGGCAGATTAGAGCGCCCCTTATTGCTCCGTTGCTGAGATTTGCTGTTGGTATTTGCTTGATAATGTCTCTGATGCTGTTTATTGAGAGGGTGTACATGGCTGTTGTTATAGTGCTGGTGAAGCTGTTTGGGAAGAGGCCTGAGAAGAGATACAAATGGGAGCCTATAAGAGATGACATAGAGCTTGGAAACAGTGCATATCCAATGGTTCTGGTGCAGATTCCCATGTACAATGAAAAAGAGGTTTATCAGCTTTCCATTGGAGCAGCTTGTGGGCTTTCATGGCCTTCAGACAGGATTATCATTCAAGTTCTTGATGATTCTACTGACCCAGCTATCAAGGAGTTGGTAACAATGGAGTGCCAGAGATGGGCTAGCAAGGGAATAAACATCAAATATGAGATCAGAGACAACAGGAATGGTTACAAGGCGGGTGCTCTGAAAGAAGGAATGAAACGCAGCTATGTGAAGGAATGTGACTATGTAGCCATCTTCGATGCAGATTTCCAGCCAGAACCAGACTACCTATGGCGAACGATTCCATTCCTGGTGCACAATCCTGAACTGGCTCTTGTTCAGGCCCGTTGGAAATTCGTGAATTCGGATGAATGCTTGATGACAAGAATGCAGGAGATGTCCTTGGATTATCATTTCACTGTCGAACAAGAAGTGGGCTCTTCTACTCACGCCTTCTTTGGGTTCAACGGTACTGCTGGAGTTTGGCGAATCAATGCTCTAAATGAAGCTGGTGGCTGGAAAGACCGCACAACTGTGGAAGATATGGATTTGGCTGTTCGGGCAAGTTTGAAGGGATGGAAGTTTGTTTTCGTGGGTGATCTTAAAGTCAAGAATGAATTACCTAGTACCTTCAAAGCATACCGCTATCAGCAGCACCGTTGGTCTTGTGGTCCAGCAAATTTGTTTAGAAAGATGGTCAAGGAGATCCTTAGAAACAAGAAAGTTACACCGTGGAAGAAGTTCCATGTCATTTATGCCTTCTTTTTTGTAAGGAAGATTGTGGCTCACATTGTCACATTCGCCTTTTACTGTGTTGTGATTCCTGCAACTGTACTTGTTCCGGAAGTCCAAGTACCCAAATGGGGGGCTGTTTACATTCCTTCAATCATCACTTTACTAAATGCAGTAAGCACTCCCAAATCTCTGCATTTGCTTGTTTTCTGGATCTTGTTTGAAAATGTGATGTCTCTGCACCGAACCAAGGCAACTTTCATTGGATTATTAGAAGCTGGCCGTGTCAATGAATGGGTTGTGACAGAAAAGCTTGGAGATGCCATGAAGCATAAATCTGGGAAGCAGATAAAAAAATCTCGCTCAAGAATTGGAGAAAGACTCCACGTCTTGGAACTTTTCGCTGGCGTCTATCTCTTCTTCTGTGCATCTTATGATCTCGCATTTGGAAAAAATCACTTCTATATCTATCTTTATCTGCAAGCTGCAGCGTTCTTCGTGATGGGATTTGGATACATTGGAACATTTGTACCAACATCCTAG___GAGGCTAGGACTACATAAAACGGAGGTGCCAGCCTGTTCTGTCTCTGTGTGGCACAGGCCTGATTGGAGTTCAATTATCTATGTATAGATTGTATCTTCTCATTCTTTTTAGGAGGATAAGTACATGGTATAGTCCCCAAAGGGACAGTGCTTCTCATGCATATCTGTTAGCTTATGCGAGAAGTCAATTTTAGCGCTATGTATGTTACCAATAAAATCAGATTCAGGTTGTTTCTCTGATGAGGGTGTATTGGGTGTTTCAAATAGTCATTCAATGGTGATTAATCTCAGATGCTCCTGTACTTGAGGCAAGAGTCAAGATGGTTTAGTCTTTAGTATATTTAAGTTAAGATCTGCTTAACTTTGAAGACGGGATGAGATGCATTTTATGGAACTGCATTACAAGAAAAAAATATCTTGAAATTAGTTTGTTGTATTCTTTGTAACAGAGGGAAGGATATCATGCAGAGGACTCAGCTCAAAGGAGACACTTGTAATCAAACTGGCCTTTACATCCTTAGTTTCAGAGGTAATTGATTCCTGAGAGATTCTTTGTTAGGTCAGCGCCATTCTTAAGATTTATAAACATGCTCGTGGCAATGTGTTACACATAAATTAAAGGTTGTTGAAGTTGTGAGGAAATTGTGATAGGCAACTCCTATGAAAGAGAGATAAGATAGCTACTCGGTGGGAAGTTGAGAGAGAAGATTGATGGATTTCTTCTTTCGTTGCCCCTCCGTACCCTTTGTCTATGATGATAAAAATATAGAAATTTGGATCTGACTATCTGTTTCATGTAATGTGAGTGGGGAAACCCATATATATGGCCTGGCCTGCAATAAAATTCTTTGGATTATCACTTTGACCGAAATGTGTAAATGATTGTCTGAAATTGTTGAGCAATTAATGGAACTTGAATTATATTTTTTTCCTTTGAAAATTTCAGTTTCAGGTTTGGATTGAAATTGAAGCTTTGCAAATGTGTTCTTCCAAGATTGTAAAGTGGCGTTTGAGTGCCAATCCGTGGAATGAATGATTATGTCTGCAAATATGCAGTTGCAGGGCTAATTT

Fln Alignment:

sp_v1.1_unigene2679___MDRLSSANLLPESFPSNDMTEQLALIWRQIRAPLIAPLLRFAVGICLIMSLMLFIERVYMAVVIVLVKLFGKRPEKRYKWEPIRDDIELGNSAYPMVLVQIPMYNEKEVYQLSIGAACGLSWPSDRIIIQVLDDSTDPAIKELVTMECQRWASKGINIKYEIRDNRNGYKAGALKEGMKRSYVKECDYVAIFDADFQPEPDYLWRTIPFLVHNPELALVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRINALNEAGGWKDRTTVEDMDLAVRASLKGWKFVFVGDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVKEILRNKKVTPWKKFHVIYAFFFVRKIVAHIVTFAFYCVVIPATVLVPEVQVPKWGAVYIPSIITLLNAVSTPKSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNEWVVTEKLGDAMKHKSGKQIKKSRSRIGERLHVLELFAGVYLFFCASYDLAFGKNHFYIYLYLQAAAFFVMGFGYIGTFVPTS
A3QT94______________MDRLSSANLLPESFPSNDMTEQLALIWRQIRAPLIAPLLRFAVGICLIMSLMLFIERVYMAVVIVLVKLFGKRPEKRYKWEPIRDDIELGNSAYPMVLVQIPMYNEKEVYQLSIGAACGLSWPSDRIIIQVLDDSTDPAIKELVTMECQRWASKGINIKYEIRDNRNGYKAGALKEGMKRSYVKDCDYVAIFDADFQPEPDYLWRTVPFLVHNPELALVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRINALNEAGGWKDRTTVEDMDLAVRASLKGWKFVFVGDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEILRNKRVTPWKKFHVIYAFFFVRKIVAHIVTFTFYCVVIPATVLVPEVQVPKWGAVYIPSIITLLNAVSTPKSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNEWVVTEKLGDAMKHKSGKQIKKSRSRIGERLHVLELFAGVYLFFCASYDLAFGRNHFYIYLYLQAAAFFVMGFGYIGTFVPTS

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
439		16		83	0.994512
740		10	90		0.90298
1156			90	10	0.90298
2030	75		16		0.99999
2032	18	81			0.999994
2033	18			81	0.999994
2034		81	18		0.999994
2040		20		80	0.999996
2041	20			80	0.999996
2057		50		50	1.0
2090	16	83			0.994512
2258		83		16	0.994512
2366	83			16	0.995451
2378	60			40	1.0
2522		82		17	1.0
2788	35	64			1.0
2872	12		87		0.999964
2949		13	86		0.999973
3042		13	86		0.999973
3043		86		13	0.999973
3247	10			90	0.90298
3249			90	10	0.90298
3250	11	22		44	1.0
3280	50		50		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
225	237	AGC AGC AGC AGC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain