SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2677

Length: 1379 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2677

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ribonuclease t2, putative (EC:3.1.27.1)	-	-	52%
FL-Next	sp=Ribonuclease 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	s-like rnase	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P42814

Fln msg: Overlapping hits, possible frame ERROR between 656 and 638,

Fln protein: MESHKFTFIIAVVVSFIAMVSGRNDTSWPKREYEQNGRSREFDYFVLSLEWPGTVCKNTKHCCATNACCHGISSSLHFTIHGLWPDYNDGSWPQCCNGPSFDESKIASLHGELERDWPSLSCSSPSDCHGKRGSFWEHEWEKHGTCAYPVIRDEYGxxxxxxxxYSKYNILDILSAAGYSPDNGKEYPTRDLIAAIRKAVGATPLLVCSQGEVMELRICFYKNFKPRDCVIEDTQQMKLYKSYCPRHVLLPQYLSSGGRQQKLLNLLHPLFVLYDKIQGY*

Protein Length: 282

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATTCAATAATGGTACCTATCCTGATAAATATTATTATATAATCGCATCTCCAATGCAAGAGGCAACCACACTGTGTCGCGACCATTAAAGGGCTCCTACGAGAACCTCTCATAAGCTAAATTTCTGGTACGATTCTCCACC_-_ATGGAGTCCCACAAATTCACATTCATCATTGCAGTTGTAGTAAGCTTCATCGCGATGGTATCGGGTAGAAACGATACTTCATGGCCTAAACGAGAGTATGAGCAAAACGGACGGAGCAGAGAGTTTGACTATTTCGTATTATCTCTCGAGTGGCCCGGTACTGTTTGTAAAAATACAAAGCACTGTTGTGCTACAAACGCTTGCTGCCACGGAATCTCCAGCTCATTACATTTCACTATTCATGGTTTATGGCCTGATTACAATGATGGGAGTTGGCCTCAATGTTGCAACGGACCTAGTTTCGATGAAAGCAAGATTGCCAGTCTGCATGGAGAACTTGAAAGGGACTGGCCATCCTTAAGCTGCAGCTCCCCAAGTGATTGTCATGGAAAAAGAGGTTCATTTTGGGAACATGAGTGGGAGAAGCATGGAACCTGTGCATACCCTGTGATTCGAGATGAATATGGTxxxxxxxxxxxxxxxxxxxxxxxxTATTCAAAGTACAACATCTTGGATATACTTAGTGCAGCTGGATATAGTCCAGACAATGGTAAAGAATATCCAACTCGTGATTTAATCGCTGCAATTAGAAAAGCTGTAGGGGCAACGCCTTTACTTGTTTGTTCGCAGGGTGAAGTGATGGAACTCCGAATTTGCTTTTACAAAAATTTTAAGCCACGGGATTGTGTCATAGAGGACACACAGCAGATGAAATTGTACAAAAGTTATTGTCCCCGGCATGTTTTGTTACCTCAGTATCTCTCATCTGGGGGGAGACAACAAAAGCTGCTGAATCTGCTTCATCCATTGTTTGTTCTGTATGATAAGATTCAGGGTTATTAA___GCTGTAAGTTGTAACATATGTGCTAGATACATTGGGCATTTATAGATAACGCTATAGAACAGTTGGTTGTTCGGATCTAAATATCTTTTTTTCATCCTTTCAAGAGGTACTGCTGTTTTAATGTCCACTGTGTCGAGCTAGTTATTTGAGCTAAGACTTGTTTGCTCAATACATTGTCTGTAGGTAGAAATCTCTAAGATAGGTTTATCTGTTTAGGTAATAATTACATTATTATTTCTTCATGGTGTTGTGTATTGGGGTACTCTCGTATTTAAAATATCTGTTACACCATTTTAAATGGTTGTGTATTTTAGACCCAACAATTATCTATCGAATATCTGGAACTTCCAATCAGATCTCTTCTATTTTC

Fln Alignment:

sp_v1.1_unigene2677___EQNGRSREFDYFVLSLEWPGTVCKNTKHCCATNACCHGISSSLHFTIHGLWPDYNDGSWPQCCNGPSFDESKIASLHGELERDWPSLSCSSPSDCHGKRGSFWEHEWEKHGTCAYPVIRDEYGYxxxxxxLYSKYNILDILSAAGYSPDNGKEYPTRDLIAAIRKAVGATPLLVCSQGEVMELRICFYKNFKPRDCVIEDTQQMKLYKSYCPRHVLLPQYLSSGGRQQKL
P42814______________ELNRSQREFDYFALSLQWPGTYCRGTRHCCSKNACCRGSDAPTQFTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYxxxxxxLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVCKRDAIDEIRICFYKDFKPRDCV--GSQDLTSRKS-CPKYVSLPEYTPLDGEAMVL

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
964		11	88		0.923564
965		88	11		0.923564
969	88	11			0.923564
971		88		11	0.923564
972			11	88	0.923564
978	90		10		0.90298
979		10		90	0.90298
980		90		10	0.90298
981		90	10		0.90298
982	90			10	0.90298
983			10	90	0.90298
984	10			90	0.90298
985		10	90		0.90298
986		10		90	0.90298
991			10	90	0.90298
998		10	90		0.90298
1104		33		66	0.997452
1126		25		75	0.996473
1216	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain