SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2651

Length: 930 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2651

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9SKV4_PHYPA	-	-	61%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	61%
Blast2go	udp-n-acetylenolpyruvoylglucosamine reductase	-	-	69%

Source	InterPros	Term	Type	Identity
Blast2go	UDP-N-acetylenolpyruvoylglucosamine reductase	IPR003170	-	69%
Blast2go	FAD linked oxidase, N-terminal	IPR006094	-	69%
Blast2go	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal	IPR011601	-	69%
Blast2go	FAD-binding, type 2	IPR016166	-	69%
Blast2go	CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2	IPR016169	-	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9SKV4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 272 - 382

Fln protein: GLLNTL*SCTPNPNCSLHSDVVHKHNLRFLILGGGSNCLFDDRGFDGCVMLNRINFIEKINPATYRVGSGYAFNLLGLQCSKDGFTGLEFASGIPGTVGGAVFMNAGADGQETADILKSVEVIMVDGSRRVFQRPELTFSYRKSPFQGMQHFAVIVAATFELKPLPSSREHQKDYLQRRYKTQPISDRSAGCVFRNPTTTTHSAGAIIEQAGLKGVMLGGAKVSEVHANFLINVEKSTSTDMRSLIKFVKDQVREKVGVELHEEILYVPYN*

Protein Length: 273

Fln nts: GGCCTGCTAAATACTTTGTAGAGCTGCACACCGAACCCCAACTGCTCGCTGCACTCAGATGTTGTTCACAAACACAATTTACGCTTTTTAATCCTTGGTGGGGGTTCCAATTGTCTTTTTGATGATCGTGGCTTTGATGGTTGTGTTATGCTTAACCGGATTAATTTTATTGAAAAAATTAATCCAGCTACATACCGAGTTGGGAGTGGCTATGCATTCAACCTGTTGGGTTTGCAATGTTCAAAGGATGGTTTTACAGGGCTCGAGTTTGCCTCTGGTATACCTGGGACTGTTGGAGGAGCTGTATTTATGAATGCAGGAGCAGATGGGCAGGAAACTGCAGATATTCTCAAATCTGTGGAGGTCATTATGGTTGATGGAAGCCGAAGGGTATTTCAGAGACCTGAACTCACATTCAGCTACCGCAAATCACCCTTTCAGGGTATGCAGCACTTTGCAGTTATTGTAGCTGCAACGTTTGAGTTAAAGCCTCTTCCATCATCAAGAGAACACCAGAAAGATTACTTGCAGAGAAGATATAAAACTCAACCAATCAGCGATCGCAGTGCTGGGTGTGTCTTTCGCAACCCTACAACTACTACTCACTCTGCTGGAGCTATCATCGAGCAAGCAGGACTGAAAGGTGTGATGCTGGGTGGTGCAAAAGTTTCAGAAGTGCATGCAAACTTTTTAATCAATGTGGAGAAATCGACTTCTACAGATATGCGTTCATTGATAAAGTTTGTCAAGGATCAAGTGAGAGAGAAAGTTGGTGTTGAGCTTCACGAGGAAATATTATATGTACCATACAATTAG___AAAAAGATTAGATTAATTTTCTGGGAGCATACCCATCTCGTACTTACCCTTAAATGTTTGCTGTTTCTGCAACAAGGTTAGTATGCTGTTTTTGTCCTCACCTATTTCTGTAAT

Fln Alignment:

sp_v1.1_unigene2651___HNLRFLILGGGSNCLFDDRGFDGCVMLNRINFIEKINPATYRVGSGYAFNLLGLQCSKDGFTGLEFASGIPGTVGGAVFMNAGADGQETADILKSVEVIMVDGSRRVFQRP--ELTFSYRKSPFQGMQHFAVIVAATFELKPLPSSREHQKDYLQRRYKTQPISDRSAGCVFRNPTTTTHSAGAIIEQAGLKGVMLGGAKVSEVHANFLINVEKSTSTDMRSLIKFVKDQVREKVGVELHEEILYVPYN
A9SKV4______________HNVRWFVVGKGSNCLFDDRGFDGCVILNRINFLEKLGTGRYRVGSGYAFNTLGVQCSRDGFSGLEFAGGIPGTVGGAIYMNAGADGQETGDVVQNVEILTTSGVSHSLSRDAGELKFDYRFSPFQKMSDFSVIVAATFDLQPNSDAKQRQRIYLERRKRTQPVTEKSAGCVFRNPGAGCQSAGALIEQAGLKGVAIGGARVSEKHANFLINGGGSKSQDVQALIALVKEEVHKKFGLWLQDEVLYIPYN

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
255			25	75	0.996473
304		25		75	0.996473
338	75		25		0.996473
376		16		83	0.994512
461	14		85		0.993533
481		14		85	0.993533
487	85		14		0.993533
537			75	25	0.996473
600	14	85			0.993533
602	85		14		0.993533
603		85	14		0.993533
604			14	85	0.993533
614			87	12	0.992554
620	87		12		0.992554
702		25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain