SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2627

Length: 2577 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene2627
ATGGGGAAGGAGAGTATGCCGTGTTTGACTGCAATGCAGAGAAGAATCGAATGCTAAATCATTGTCACGCACTGAAAACAAACAAAGGAACCACGACCGAGGAAAGTAACAGGAGCCGCAGCAGCAGCCATGGATTCGCCATCGGAAGCTGCCCACCAAAAGCCCAGCTGAGGTGCTGATAATAAGGTGTGGTGATAATAAGGTACTGACTGCAACATCCATATCGTCGTATTTTATGGGTTTCTGATTTTTCCTTTCGGGTTGTGGATATTATCGGTCCTGGTACTGGAAAAACGTTTTGGTAAGGGGTTGACATGGGGATAACAATGCTTATGTTCATGCTCAGGCTTTGTCATTTTATCAAGAGGTAATCCATGCTTGTTGGGGTAGTAGCAATACTGATTGATTCGGGCCGGGAGTCCTGTTGAGTGGACGCTGGGTTGTTAGGATAGGCGATCAGTGAAACCATGAGAAAATTCGGGTTTTTGGGCCTTCTGGGGGTCATGCTAGTGATTTTCCAACNGATATGCCTCATTTCGTCCCAGACCATTTCTCCAGGAAATGATATAGAGTGTCTTCAGACTACTTACAAGGAATTGAAGGACCCTCAGGACAATCTCTACACCTGGAACTTCGCGAACACTACCAAGGGGTTTATTTGCAATTTTCTGGGAATTACTTGTTGGCATAATGATGATAACAAAGTGCTGTCAATTTCACTTCAAGGTATGGAGCTTCAAGGTGAGTTCCCATCTGGAGTACAGTACTGCAAGAGTATGACGAGCTTGACTCTCTCTCAAAACAGTCTTACGGGTACCATTCCCAGAAAGCTCTGCCAATGGCTTCCTTTTCTGGTAACCATTGATCTCTCCAACAACAAGTTTACGGGACCTATTCCTGATGAGCTTTATAATTGCACATACCTCAATATCCTCCGCCTGAATGGAAATCAACTTACAGGGGCAATTCCCTGGGAATTGACACGGCTCGATCGTCTCAAGGACTTCAATGTAGCAAACAACAAGCTAACTGGAAATATACCTTCATTCCCTCACAACTTTTCTGCCTCTAGTTTTCAGGGTAACCCTGGGCTATGTGGGCCTCCCCTTCCGAAAGCATGCGGCGGGGCTAGCAAGTCTAGTATAGGTATTGAAGTTGCGGCAGCTGTTGCGGGCGTATTGATTGTGTCATTGCTTGGTCTTGCCTTTTGGTGGTGGTGTATCAGAATAAGCCCAAAGAAATTGGCTGAAATGAGGGACGAGAACAAGTGGGCAAAACGGATTAGGGCTCCGAAGTCTATCCAAGTGTCCATGTTTGAGAAGCCCATTAACAAAATCAAGCTTTCTGATCTAATGGCTGCCACAAACGATTTCAGCCCAGAAAACATCATAGGATCAGGCAGGACAGGCACTGTTTATAGAGCGACACTGGCTGATGGATCTGTAATGGCGATAAAAAGGCTTCGAGACACTGCCCAATCTGAAAAGCAGTTTAAGGCTGAAATGAATACGTTAGCCCGATTGAGGCACCGGAATCTTGTTCCTCTTCTGGGTTACTGCATTGCCGGACAAGAGAAGCTTTTAGTGTACAAACACATGGCTAATGGAAGCCTGTGGGACTGCCTGCACAGCAAGGAGAATCCAGAGAATAATTTGGATTGGACTGCAAGGCTCAAAATTGGAATTGGCGGAGCTAGAGGAATGGCATGGCTTCATCACAGTTGCAACCCTCGTGTCATACACCGTAATATAAGTTCAAACAGTATTCTTCTTGATGAAGAGTACGAGCCTAGAATAACAGATTTTGGATTGGCAAGGTTGATGAATCCAGTAGATACTCATCTTAGCACTTTCATAAACGGTGACTTTGGAGATCTGGGCTATGTAGCACCTGAATACATGCGCACCTTGGTGGCTACTTTGAAAGGAGATGTGTACAGCTTTGGAGTGGTTCTTCTAGAATTAGTTACAGGACAGAAGCCTATCAATGTTGAAAATGTAGAGAATAGCTTCAAGGGTAATCTAGTAGATTGGATTACTCAACTTTCAAACGATGCCCGCATCGAGGAAGCTATTGATAAATCTTTGGTAGGCAGGGGACAAGATGATGAGCTTCTGCAATTTATGAGAGTCGCATGTGCGTGTGTGCTGTCTGGGCCCAAGGAAAGGCCTTCAATGTATGAGGTCTATCATTTGCTAAGGGCAATTGGTGAGAAGTACAACTTCTCAGATGAGAATGATGAGATTCTATTGGCATCAGGAACTGTTGACAACGACTATTCAAATGAGCTTATAGTGTCTAGAGAATAAAGCTCGTATATAATCAAGATCATTCCTTGGGAAAGTCTCTCCTAGAAATAACTGATAAAAATGAGAACACGGGGTGATACTCTTTTTTGGGTACATAGGAACAAGCAAGGTATGAATTTCTATGTGACATTCAGACATTCTATAGGTAGCCGTTTATGATAACTTTGTTGTAATAAATTAGATCTTTAGGTTATAAACATCTTGTATTGGATTTAAGGCCTTTAGGTTATTTTGTATCATCAATTCAGTATTTAATCGCTCTTATCCT

Ace file of the UniGene sp_v1.1_unigene2627 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os05g0414700 protein (Fragment) n=2 Tax=Oryza sativa Japonica Group RepID=Q0DI56_ORYSJ	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	protein kinase	-	-	74%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	74%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	74%
Blast2go	Leucine-rich repeat	IPR001611	-	74%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	74%
Blast2go	Protein kinase-like domain	IPR011009	-	74%
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	74%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	74%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM41

Fln msg:

Fln protein: MRKFGFLGLLGVMLVIFQLICLISSQTISPGNDIECLQTTYKELKDPQDNLYTWNFANTTKGFICNFLGITCWHNDDNKVLSISLQGMELQGEFPSGVQYCKSMTSLTLSQNSLTGTIPRKLCQWLPFLVTIDLSNNKFTGPIPDELYNCTYLNILRLNGNQLTGAIPWELTRLDRLKDFNVANNKLTGNIPSFPHNFSASSFQGNPGLCGPPLPKACGGASKSSIGIEVAAAVAGVLIVSLLGLAFWWWCIRISPKKLAEMRDENKWAKRIRAPKSIQVSMFEKPINKIKLSDLMAATNDFSPENIIGSGRTGTVYRATLADGSVMAIKRLRDTAQSEKQFKAEMNTLARLRHRNLVPLLGYCIAGQEKLLVYKHMANGSLWDCLHSKENPENNLDWTARLKIGIGGARGMAWLHHSCNPRVIHRNISSNSILLDEEYEPRITDFGLARLMNPVDTHLSTFINGDFGDLGYVAPEYMRTLVATLKGDVYSFGVVLLELVTGQKPINVENVENSFKGNLVDWITQLSNDARIEEAIDKSLVGRGQDDELLQFMRVACACVLSGPKERPSMYEVYHLLRAIGEKYNFSDENDEILLASGTVDNDYSNELIVSRE*

Protein Length: 615

Fln nts: ATGGGGAAGGAGAGTATGCCGTGTTTGACTGCAATGCAGAGAAGAATCGAATGCTAAATCATTGTCACGCACTGAAAACAAACAAAGGAACCACGACCGAGGAAAGTAACAGGAGCCGCAGCAGCAGCCATGGATTCGCCATCGGAAGCTGCCCACCAAAAGCCCAGCTGAGGTGCTGATAATAAGGTGTGGTGATAATAAGGTACTGACTGCAACATCCATATCGTCGTATTTTATGGGTTTCTGATTTTTCCTTTCGGGTTGTGGATATTATCGGTCCTGGTACTGGAAAAACGTTTTGGTAAGGGGTTGACATGGGGATAACAATGCTTATGTTCATGCTCAGGCTTTGTCATTTTATCAAGAGGTAATCCATGCTTGTTGGGGTAGTAGCAATACTGATTGATTCGGGCCGGGAGTCCTGTTGAGTGGACGCTGGGTTGTTAGGATAGGCGATCAGTGAAACC_-_ATGAGAAAATTCGGGTTTTTGGGCCTTCTGGGGGTCATGCTAGTGATTTTCCAACtGATATGCCTCATTTCGTCCCAGACCATTTCTCCAGGAAATGATATAGAGTGTCTTCAGACTACTTACAAGGAATTGAAGGACCCTCAGGACAATCTCTACACCTGGAACTTCGCGAACACTACCAAGGGGTTTATTTGCAATTTTCTGGGAATTACTTGTTGGCATAATGATGATAACAAAGTGCTGTCAATTTCACTTCAAGGTATGGAGCTTCAAGGTGAGTTCCCATCTGGAGTACAGTACTGCAAGAGTATGACGAGCTTGACTCTCTCTCAAAACAGTCTTACGGGTACCATTCCCAGAAAGCTCTGCCAATGGCTTCCTTTTCTGGTAACCATTGATCTCTCCAACAACAAGTTTACGGGACCTATTCCTGATGAGCTTTATAATTGCACATACCTCAATATCCTCCGCCTGAATGGAAATCAACTTACAGGGGCAATTCCCTGGGAATTGACACGGCTCGATCGTCTCAAGGACTTCAATGTAGCAAACAACAAGCTAACTGGAAATATACCTTCATTCCCTCACAACTTTTCTGCCTCTAGTTTTCAGGGTAACCCTGGGCTATGTGGGCCTCCCCTTCCGAAAGCATGCGGCGGGGCTAGCAAGTCTAGTATAGGTATTGAAGTTGCGGCAGCTGTTGCGGGCGTATTGATTGTGTCATTGCTTGGTCTTGCCTTTTGGTGGTGGTGTATCAGAATAAGCCCAAAGAAATTGGCTGAAATGAGGGACGAGAACAAGTGGGCAAAACGGATTAGGGCTCCGAAGTCTATCCAAGTGTCCATGTTTGAGAAGCCCATTAACAAAATCAAGCTTTCTGATCTAATGGCTGCCACAAACGATTTCAGCCCAGAAAACATCATAGGATCAGGCAGGACAGGCACTGTTTATAGAGCGACACTGGCTGATGGATCTGTAATGGCGATAAAAAGGCTTCGAGACACTGCCCAATCTGAAAAGCAGTTTAAGGCTGAAATGAATACGTTAGCCCGATTGAGGCACCGGAATCTTGTTCCTCTTCTGGGTTACTGCATTGCCGGACAAGAGAAGCTTTTAGTGTACAAACACATGGCTAATGGAAGCCTGTGGGACTGCCTGCACAGCAAGGAGAATCCAGAGAATAATTTGGATTGGACTGCAAGGCTCAAAATTGGAATTGGCGGAGCTAGAGGAATGGCATGGCTTCATCACAGTTGCAACCCTCGTGTCATACACCGTAATATAAGTTCAAACAGTATTCTTCTTGATGAAGAGTACGAGCCTAGAATAACAGATTTTGGATTGGCAAGGTTGATGAATCCAGTAGATACTCATCTTAGCACTTTCATAAACGGTGACTTTGGAGATCTGGGCTATGTAGCACCTGAATACATGCGCACCTTGGTGGCTACTTTGAAAGGAGATGTGTACAGCTTTGGAGTGGTTCTTCTAGAATTAGTTACAGGACAGAAGCCTATCAATGTTGAAAATGTAGAGAATAGCTTCAAGGGTAATCTAGTAGATTGGATTACTCAACTTTCAAACGATGCCCGCATCGAGGAAGCTATTGATAAATCTTTGGTAGGCAGGGGACAAGATGATGAGCTTCTGCAATTTATGAGAGTCGCATGTGCGTGTGTGCTGTCTGGGCCCAAGGAAAGGCCTTCAATGTATGAGGTCTATCATTTGCTAAGGGCAATTGGTGAGAAGTACAACTTCTCAGATGAGAATGATGAGATTCTATTGGCATCAGGAACTGTTGACAACGACTATTCAAATGAGCTTATAGTGTCTAGAGAATAA___AGCTCGTATATAATCAAGATCATTCCTTGGGAAAGTCTCTCCTAGAAATAACTGATAAAAATGAGAACACGGGGTGATACTCTTTTTTGGGTACATAGGAACAAGCAAGGTATGAATTTCTATGTGACATTCAGACATTCTATAGGTAGCCGTTTATGATAACTTTGTTGTAATAAATTAGATCTTTAGGTTATAAACATCTTGTATTGGATTTAAGGCCTTTAGGTTATTTTGTATCATCAATTCAGTATTTAATCGCTCTTATCCT

Fln Alignment:

sp_v1.1_unigene2627___MRKXXXXXXXGVMLVIFQLICLISSQTISPGNDIECLQTTYKELKDPQDNLYTWNFANTTKGFICNFLGITCWHNDDNKVLSISLQGMELQGEFPSGVQYCKSMTSLTLSQNSLTGTIPRKLCQWLPFLVTIDLSNNKFTGPIPDELYNCTYLNILRLNGNQLTGAIPWELTRLDRLKDFNVANNKLTGNIPSFPHNFSASSFQGNPGLCGPPLPKACGGASKXXXXXXXXXXXXXXXXXXXXXXAFWWWCIRISPKKLAEMRDENKWAKRIRAPKSIQVSMFEKPINKIKLSDLMAATNDFSPENIIGSGRTGTVYRATLADGSVMAIKRLRDTAQSEKQFKAEMNTLARLRHRNLVPLLGYCIAGQEKLLVYKHMANGSLWDCLHSKENPENNLDWTARLKIGIGGARGMAWLHHSCNPRVIHRNISSNSILLDEEYEPRITDFGLARLMNPVDTHLSTFINGDFGDLGYVAPEYMRTLVATLKGDVYSFGVVLLELVTGQKPINVENVENSFKGNLVDWITQLSNDARIEEAIDKSLVGRGQDDELLQFMRVACACVLSGPKERPSMYEVYHLLRAIGEKYNFSDENDEILLASGTVDNDYSNELIVSRE
B8LM41______________MRKFGCLSLLGVMLLILQLTCPVSSQPSVAENDIQCLQSTKNHLKDPQDNLYTWNFDNSTKGFICNFLGITCWHNDDNKVLSISLQEMGLQGEFPPGVKYCGSMTSLTLSQNSLTGTIPKELCQWLPYLVTIDLSQNEFTGSIPAELHNCTYLNILRLNGNQLTGEIPWQLSRLDRLTELNVANNKLTGYIPSLEHNMSASYFQNNPGLCGKPLSNTCVGKGKSSIGVAIGAAVAGVLIVSLLGFAFWWWFIRISPKKLAEMKDENKWAKRIRAPKSIQVSMFEKPINKIKLSDLMAATNDFSPENIIGSGRTGTVYRATLTDGSVMAIKRLRDSAQSEKQFKAEMNTLARLRHRNLVPLLGYCIAGQEKLLVYKHMANGSLWDCLQSKENPANNLDWTARLKIGIGGARGMAWLHHSCNPRVIHRNISSNSILLDDEYEPRITDFGLARLMNPVDTHLSTFINGDFGDLGYVAPEYMRTLVATLKGDVYSFGVVLLELVTGQKPINVENGEDGFKGNLVDWITKLSNDGRISEAIDKSLIGRGQEDELLQFMRVACACVLSGAKERPSMYEVYHLLRAIGEKYNFSDGNDEIPLTSGTADNDRSSELIVAFE

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
2497		20	80		0.995493
2498		20		80	0.995493
2499		20		80	0.995493
2500		25		75	0.996473
2501		25	75		0.996473
2502	25			75	0.996473
2510		33	66		0.997452
2512		33	66		0.997452
2513		33		66	0.997452
2514	33		66		0.997452
2515	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain