SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2622

Length: 2012 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2622
TCATGGGGATTGAGATCCTCGACAAACCACAGCCCACGACACGACGACGAGGATAACAGAAAGTAAGTAAAGGGCGAGTGCGAGCGCAGGGGCAAAGAAGTGAAAGAGCATGGCCGAAGAGTTGGAAGAGTGGTGCCGTTGTCTTCCGAAGGTGGAGCTTCATGCTCATCTCAACGGGTCTATTCGCGATACCACGCTACTAGAACTTGCAAGAGAGAGGAGCAAGAAGGGCCAATTAGTTCTTTCTGATTTTGAAGATGTTATCTTAAAAGATGATCGCTCCCTGCAGGAATGCTTCAAGTTGTTTGACTTGATCCATGTGCTCACCACGGACCATGGTACCATTAGTAGAGTTGCTAAAGAAGTTATTGAAGACTTTGCAGCAGAAAATGTCATTTACTTGGAGCTACGCACAACACCAAAGAAGAATGAAGCTATAGGTATGAGTAAGCGTTCATATGTGGAAGCAGTTCTTGCTGGGTTCAAGGCAGTAGAAACAGTGGAAACAATTTTTCTGCCTATCGACGGAAATATTCAACATATTGTTCCACTTGTGCAAGAAAATGGTTCAGCCAAAGGGCCTAGAATGTGCCAAATATTTGTCCGCTTGCTTTTAAGTATANATCGTCGTGAGAATTTANATGGAGCGATGGAAACAGTTCAGCTAGCTTTAGATATGAGGAACTCGGGTGTAGTTGGCATTGATCTTTCAGGGAACCCTATAGTTGGAGAATGGCAGACATTCTTACCAGCGTTGACGTGGGCCAGAAACCAGGGGCTTCCTATTACTCTTCATTGTGGAGAGGTACCAAACCGGCAGGAAATTCAGGGTATGCTGGACTTTCATCCCGAGAGACTTGGTCATGTGTGCTGCCTTGATGATCTTGAATGGAAAACATTGAAGGCATCAGATATCCCGGTTGAGGTTTGCTTGACATCGAATGTCCGTACGGAATGTGTCACTTCAATAGCCGACCATCATTTTGCTGATCTGTACCAGGAAAAACATCCCTTGATCTTGTGCACAGACGATCCAGGTGTCTTCTCCACTACAATCTCTTGTGAATATGCTCTGGCTGCTTCATGTTTTGAACTCACAAAACCGGAGTTATTCCGACTGGCAAAGGACGCAATAAAATTCATATTTGCTGATGATAAAGTGAAACAATCTCTAAGTCTCATAATTGATGCAGCAGAGTGTGACTTGCTGATACCCAATGAAGATGTTGAAAATTGCTTGCCATCGGAAAAATAATTTAGGCTTGGCAAGTTGGATAAATTATATTGGACTATGGCATCGTCTTTCTTATTCAAGGTTAGAGAAATTACTTAAGGCAGTGAGATTGCATAAAAAGGTGTGTCCTTAAGGTTCTCCATGGTTATTTTACATCACCAAGGAACTTATATTTATTCTTTTAGCTGATCCAAAGAGGCACTCATTTCTGGCCAGTTTGTGAAGAAGGATTTTTCTACTCTTTCGAACTTGGACTGCTCGACACTTGCTTTTGAGCAAGGGTGTGCTGGGTTAGCTTGTGCACATGCATGTTTTGAAAGCTGTATTCTGCCATCTAGCAGTAGCCGGACAGACATCTGACCAGGCCAAGCAGGCACATTCATCGACTAATTCTAGCTTCCTTTCTACCCAGTCTCAAATATTTTATCCCAGTCACAGTTCAACACCCACGTATCATGAAATTGGTGATAAAGCTTGTGTTGAGGGCGGTCTGTTCTCAACATCCTAAGAAAATTGCCTTATTCGTCTTAAAAGATTAACTTATCTCTGTCGCCCCTTAAATTATATCTATCTATAACATTCTCTCAATACAATAAGTGATTCCAGAGACTAATATGCACAATCCACATTTTAAGGGATTATCATTAGATTATGCTAATTGGGCATTGATTTATTAGTGAGGGCGACATGCTGTTAAGTCTTTATCATGATTCCATTCTCACTGTGGTTTGTCCCTCTTGAATTTCATGTGATGCAAGTGTTTGGTGATTTTGGCAGA

Ace file of the UniGene sp_v1.1_unigene2622

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Deaminase n=3 Tax=Andropogoneae RepID=B6TRX4_MAIZE	-	-	60%
FL-Next	tr=Deaminase; Zea mays (Maize).	-	-	60%
Blast2go	adenosine deaminase	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Adenosine/AMP deaminase domain	IPR001365	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B6TRX4

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MAEELEEWCRCLPKVELHAHLNGSIRDTTLLELARERSKKGQLVLSDFEDVILKDDRSLQECFKLFDLIHVLTTDHGTISRVAKEVIEDFAAENVIYLELRTTPKKNEAIGMSKRSYVEAVLAGFKAVETVETIFLPIDGNIQHIVPLVQENGSAKGPRMCQIFVRLLLSINRRENLHGAMETVQLALDMRNSGVVGIDLSGNPIVGEWQTFLPALTWARNQGLPITLHCGEVPNRQEIQGMLDFHPERLGHVCCLDDLEWKTLKASDIPVEVCLTSNVRTECVTSIADHHFADLYQEKHPLILCTDDPGVFSTTISCEYALAASCFELTKPELFRLAKDAIKFIFADDKVKQSLSLIIDAAECDLLIPNEDVENCLPSEK*

Protein Length: 383

Fln nts: TCATGGGGATTGAGATCCTCGACAAACCACAGCCCACGACACGACGACGAGGATAACAGAAAGTAAGTAAAGGGCGAGTGCGAGCGCAGGGGCAAAGAAGTGAAAGAGC_-_ATGGCCGAAGAGTTGGAAGAGTGGTGCCGTTGTCTTCCGAAGGTGGAGCTTCATGCTCATCTCAACGGGTCTATTCGCGATACCACGCTACTAGAACTTGCAAGAGAGAGGAGCAAGAAGGGCCAATTAGTTCTTTCTGATTTTGAAGATGTTATCTTAAAAGATGATCGCTCCCTGCAGGAATGCTTCAAGTTGTTTGACTTGATCCATGTGCTCACCACGGACCATGGTACCATTAGTAGAGTTGCTAAAGAAGTTATTGAAGACTTTGCAGCAGAAAATGTCATTTACTTGGAGCTACGCACAACACCAAAGAAGAATGAAGCTATAGGTATGAGTAAGCGTTCATATGTGGAAGCAGTTCTTGCTGGGTTCAAGGCAGTAGAAACAGTGGAAACAATTTTTCTGCCTATCGACGGAAATATTCAACATATTGTTCCACTTGTGCAAGAAAATGGTTCAGCCAAAGGGCCTAGAATGTGCCAAATATTTGTCCGCTTGCTTTTAAGTATAaATCGTCGTGAGAATTTAcATGGAGCGATGGAAACAGTTCAGCTAGCTTTAGATATGAGGAACTCGGGTGTAGTTGGCATTGATCTTTCAGGGAACCCTATAGTTGGAGAATGGCAGACATTCTTACCAGCGTTGACGTGGGCCAGAAACCAGGGGCTTCCTATTACTCTTCATTGTGGAGAGGTACCAAACCGGCAGGAAATTCAGGGTATGCTGGACTTTCATCCCGAGAGACTTGGTCATGTGTGCTGCCTTGATGATCTTGAATGGAAAACATTGAAGGCATCAGATATCCCGGTTGAGGTTTGCTTGACATCGAATGTCCGTACGGAATGTGTCACTTCAATAGCCGACCATCATTTTGCTGATCTGTACCAGGAAAAACATCCCTTGATCTTGTGCACAGACGATCCAGGTGTCTTCTCCACTACAATCTCTTGTGAATATGCTCTGGCTGCTTCATGTTTTGAACTCACAAAACCGGAGTTATTCCGACTGGCAAAGGACGCAATAAAATTCATATTTGCTGATGATAAAGTGAAACAATCTCTAAGTCTCATAATTGATGCAGCAGAGTGTGACTTGCTGATACCCAATGAAGATGTTGAAAATTGCTTGCCATCGGAAAAATAATTTAGGCTTGGCAAGTTGGATAAATTATATTGGACTATGGCATCGTCTTTCTTATTCAAGGTTAGAGAAATTACTTAAGGCAGTGAGATTGCATAAAAAGGTGTGTCCTTAAGGTTCTCCATGGTTATTTTACATCACCAAGGAACTTATATTTATTCTTTTAGCTGATCCAAAGAGGCACTCATTTCTGGCCAGTTTGTGAAGAAGGATTTTTCTACTCTTTCGAACTTGGACTGCTCGACACTTGCTTTTGAGCAAGGGTGTGCTGGGTTAGCTTGTGCACATGCATGTTTTGAAAGCTGTATTCTGCCATCTAGCAGTAGCCGGACAGACATCTGACCAGGCCAAGCAGGCACATTCATCGACTAATTCTAGCTTCCTTTCTACCCAGTCTCAAATATTTTATCCCAGTCACAGTTCAACACCCACGTATCATGAAATTGGTGATAAAGCTTGTGTTGAGGGCGGTCTGTTCTCAACATCCTAAGAAAATTGCCTTATTCGTCTTAAAAGATTAACTTATCTCTGTCGCCCCTTAAATTATATCTATCTATAACATTCTCTCAATACAATAAGTGATTCCAGAGACTAATATGCACAATCCACATTTTAAGGGATTATCATTAGATTATGCTAATTGGGCATTGATTTATTAGTGAGGGCGACATGCTGTTAAGTCTTTATCATGATTCCATTCTCACTGTGGTTTGTCCCTCTTGAATTTCATGTGATGCAAGTGTTTGGTGATTTTGGCAGA

Fln Alignment:

sp_v1.1_unigene2622___EELEEWCRCLPKVELHAHLNGSIRDTTLLELARERSKKGQLVLSDFEDVILKDDRSLQECFKLFDLIHVLTTDHGTISRVAKEVIEDFAAENVIYLELRTTPKKNEAIGMSKRSYVEAVLAGFKAVETVETIFLPIDGNIQHIVPLVQENGSAKGPRMCQIFVRLLLSINRRENLHGAMETVQLALDMRNSGVVGIDLSGNPIVGEWQTFLPALTWARNQGLPITLHCGEVPNRQEIQGMLDFHPERLGHVCCLDDLEWKTLKASDIPVEVCLTSNVRTECVTSIADHHFADLYQEKHPLILCTDDPGVFSTTISCEYALAASCFELTKPELFRLAKDAIKFIFADDKVKQSLSLIIDAAECDLLIPNE
B6TRX4______________EEMREWCVALPKVELHAHLNGSVRNSTLLELAKQLGDKGIIVFEDVKDVIMKSDRSLPECFKLFDLFHILTTDHDTVTRIAKEVVEDFAAENVVYLEIRTTPKNNEAKGMTKRSYMDAVIKGLKAVEDVDVELFGSNFRTNETLSSKLLDGDTKKKK---IYVRLLLSIDRRETTSAALDTVNLAMEMMDQGVIGIDLSGNPVVGEWETYLPALQHAKNLGIPVTIHCGEVANRKEIQAVLDFCPQRLGHVCCLNDVEWKKLKSLMIPVEICLTSNVMTGGAPSLELHHFADLYNAKHPLSLCTDDSGLFSTSLSNEYYLVATTFGLSKSELFQLAQDAVQFVFADDVVKKSLKEVFKHAEKRLLMWDE

SNPs (tot: 90)

Position	A %	C %	G %	T %	Probability
476		14		85	0.993533
483		14		71	0.984337
546	33		66		1.0
626	25		75		0.996473
644	25		75		0.996473
758	25		75		0.996473
761			40	60	1.0
928			14	85	0.993533
932		14	85		0.993533
933		14	85		0.993533
936			14	85	0.993533
942	85			14	0.993533
944	87		12		0.992554
947			87	12	0.992554
948	75	12			0.975346
952	12			87	0.992554
957	87			12	0.992554
958		87	12		0.992554
960		12	87		0.992554
961	87			12	0.992554
962	87		12		0.992554
964		12	87		0.992554
965	11	11		77	0.968132
966		11	88		0.923564
969	88		11		0.923564
970		88		11	0.923564
971			11	88	0.923564
972	11			88	0.923564
974	88	11			0.923564
975	88			11	0.923564
977	88		11		0.923564
980		88		11	0.923564
982	88			11	0.923564
984	11	88			0.923564
985	88	11			0.923564
1055		88		11	0.923564
1068		23		76	1.0
1073	76	23			1.0
1074		23		76	1.0
1075	76			23	1.0
1079			23	76	1.0
1083			76	23	1.0
1086	23		76		1.0
1089		15		84	0.999986
1090	15	84			0.999986
1092		13		80	0.999961
1095		13		86	0.999973
1096			13	86	0.999973
1100	86	13			0.999973
1103		86	13		0.999973
1104	86		13		0.999973
1106	85		14		0.999981
1107	85			14	0.999981
1108	85	14			0.999981
1111		85		14	0.999981
1112		14	85		0.999981
1113	14		85		0.999981
1319	10	90			0.90298
1422		14		85	0.993533
1423			14	85	0.993533
1425	85	14			0.993533
1426			85	14	0.993533
1432	14	85			0.993533
1434	85			14	0.993533
1435	85			14	0.993533
1436	85		14		0.993533
1438	83			16	0.994512
1440			83	16	0.994512
1464	66		33		0.997452
1509			66	33	0.997452
1560	66		33		0.997452
1600		20		80	0.995493
1603		80		20	0.995493
1606	60			40	1.0
1608	20		20	60	0.99255
1610		20		80	0.995493
1611	75			25	0.996473
1612	75			25	0.996473
1614			20	80	0.995493
1615	60	40			1.0
1616	20			80	0.995493
1624		20		80	0.995493
1625	20	80			0.995493
1634	90	10			0.90298
1635			10	90	0.90298
1640		10	90		0.90298
1644		88	11		0.923564
1647			11	88	0.923564
1653		88		11	0.923564
1694		81	18		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain