SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2617

Length: 1376 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2617

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	unknown [Picea sitchensis]	-	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPT6

Fln msg:

Fln protein: MAKNQDTDTAWIFQASQRDMETVTKALERELNSRPGEEVVISTSNMKNAGPSQSEVMSPSMSFREPGSPSQAGEEAKASLGVSDSMASRNRTPPAEPLSTSCSNQRSISVMNDFIGKRRSQRGNRSPITIMTADSADFQAIVQQMTGFAPESSSRAAPSLLKPLPKRPGQIANNNTPSALLTFDSSSLGPINGLLDNRSRPSYPYSAALCNNLAEKSMYSVGTVASSSHFHSMGIEQANALQSHVNAFGQMDFWN*

Protein Length: 257

Fln nts: GGGAAACGGGGGTCCGATTAATTCCTGCGTAGTGACCGAACAAGCCACGCATGCCTGGCGCTTCCAACCCTCCGAT_-_ATGGCCAAAAATCAAGATACTGACACTGCGTGGATCTTCCAGGCCTCGCAGCGAGACATGGAAACCGTAACGAAGGCGCTGGAGAGGGAATTGAACTCCAGACCAGGCGAAGAAGTCGTCATCAGCACTTCGAATATGAAGAACGCGGGACCTTCCCAGAGCGAGGTAATGTCGCCGTCCATGTCCTTTCGTGAACCAGGCAGCCCTTCCCAGGCCGGCGAGGAAGCAAAAGCAAGCCTGGGAGTTTCGGATTCGATGGCTTCAAGGAATCGAACCCCGCCAGCAGAGCCGTTGTCAACATCTTGTAGTAATCAGAGATCCATCTCGGTGATGAATGATTTCATCGGCAAGAGGCGGTCGCAAAGGGGAAACAGGTCTCCGATCACAATTATGACGGCAGACAGTGCTGATTTCCAAGCAATTGTTCAGCAGATGACGGGTTTTGCCCCCGAAAGCAGCAGCAGGGCCGCGCCGTCTCTGTTGAAGCCACTGCCAAAGCGGCCCGGTCAAATTGCCAACAATAACACACCCTCCGCCCTGCTCACGTTCGATTCTTCGTCCTTGGGGCCCATAAACGGCTTATTGGACAATCGCTCTCGCCCTAGCTACCCGTATTCAGCAGCTTTATGCAACAATTTGGCAGAGAAGTCCATGTATTCAGTGGGCACTGTAGCATCTAGTTCACATTTTCATTCCATGGGAATTGAGCAGGCTAACGCTCTGCAGAGCCATGTTAACGCCTTCGGTCAAATGGATTTTTGGAATTAA___TTAACGATTGTTTCGTCAGTATCTGGAACATATGAGCCTCAGTTCTTACTTCTGATACTTTTTCCTGACCAGGGATGTAATTTTAAGTTGCAATATGTGGTTATGAAGGTGGTTTTCGGTCTTGGTTGTTGGAGTAGGGCTTTGGGTATAAGCTAATAAGACGATCAGGACCATGAAATGTTCTCCTTCTCTGGTTTTTAGTTTGGGTGATATGTTGTAAAGGAGAAATTCAGAAAATGTGGTCTAATGGTTAGGCCGGAAGATTGGGTGGTTATAAGATTTGTGGTTTAATAGTTAGTTGCGAAAGTTTGTTGTTTATAAAATTTGTGGTTTATGTAATTTTAAGTTGTAATATGTAGTTATGAAGGTGGTTTTCGATCTTGGATGTTGGGGTATAGGCTTTGGGTATAAGATGATAAGACGATCAAGACCATCGAGCGTTCTTCTTTTTAGTTTCGGTAAAGTGGGGGAAAAAATAAATTTAAAAAATGTGGTCTAATGATTAGACGGGGAGATTTGGTGTTTATAAAAT

Fln Alignment:

sp_v1.1_unigene2617___SDMAKNQDTDTAWIFQASQRDMETVTKALERELNSRPGEEVVISTSNMKNAGPSQSEVMSPSMSFREPGSPSQAGEEAKASLGVSDSMASRNRTPPAEPLSTSCSNQRSISVMNDFIGKRRSQRGNRSPITIMTADSADFQAIVQQMTGF
C0PPT6______________SDAAKNQDIDAAWFFQASQRDMEIVTRALERELNSRPDEEPVIRTSNEKNAGPSSSEVAPSSMSSCDPVSPSQAAEETKARLEVSDSTAPWNLTLPAEALSRSCNNQRSIPAINNFIGKRRSRMGNRAPITIMRADPVDFQAMVQQMTGF

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
234	22	66			0.999999
235	11		66		0.999999
262	20	80			0.995493
369		12		87	0.992554
372		87	12		0.992554
374	87	12			0.992554
376	87			12	0.992554
378		87	12		0.992554
379		12		87	0.992554
384		12	87		0.992554
421		87		12	0.992554
604	88		11		0.999937
860			12	87	0.992554
864	12			87	0.992554
909		85		14	0.993533
1035		90		10	0.90298
1181		20		80	0.995493
1283		60		40	1.0
1301		33	66		0.997452
1302			66	33	0.997452
1303			66	33	0.997452
1305	66			33	0.997452
1306	66			33	0.997452
1307	33			66	0.997452
1310			66	33	0.997452
1311			66	33	0.997452
1312			33	66	0.997452
1314			33	66	0.997452
1315	66			33	0.997452
1318	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain